Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 8.8e-44 179.9 89 100.0
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 1.7e-31 139.0 86 84.9
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 8.5e-31 136.7 86 83.7
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 1.1e-30 136.3 86 82.6
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 2.5e-30 135.2 86 81.4
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 9.4e-30 133.3 86 81.4
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 1.2e-29 132.9 86 81.4
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 1.6e-29 132.5 87 80.5
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 4.7e-29 131.0 86 79.1
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 6.1e-29 130.6 86 80.2
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 8.0e-29 130.2 86 80.2
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 1.0e-28 129.8 88 76.1
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 1.8e-28 129.0 87 77.0
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.8e-28 129.0 87 77.0
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 1.8e-28 129.0 87 77.0
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 1.8e-28 129.0 86 79.1
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 3.0e-28 128.3 88 76.1
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 3.0e-28 128.3 86 77.9
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 3.0e-28 128.3 87 77.0
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 4.0e-28 127.9 87 77.0
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.0e-28 127.9 87 75.9
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 4.0e-28 127.9 87 77.0
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 4.0e-28 127.9 87 77.0
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 5.2e-28 127.5 87 75.9
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 5.2e-28 127.5 87 77.0
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 5.2e-28 127.5 87 75.9
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 6.7e-28 127.1 86 74.4
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 6.7e-28 127.1 87 77.0
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 6.7e-28 127.1 87 74.7
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 8.8e-28 126.7 87 75.9
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 1.2e-27 126.3 86 77.9
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.5e-27 125.9 87 74.7
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 1.5e-27 125.9 87 75.9
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 1.5e-27 125.9 87 74.7
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.5e-27 125.9 87 73.6
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 2.0e-27 125.6 87 74.7
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 2.0e-27 125.6 86 73.3
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.0e-27 125.6 87 74.7
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.0e-27 125.6 86 75.6
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 2.0e-27 125.6 87 74.7
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 2.6e-27 125.2 87 74.7
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 2.6e-27 125.2 86 76.7
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 2.6e-27 125.2 87 74.7
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 3.3e-27 124.8 87 74.7
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 3.3e-27 124.8 86 75.6
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 4.4e-27 124.4 87 73.6
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 4.4e-27 124.4 87 73.6
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 5.7e-27 124.0 86 73.3
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 5.7e-27 124.0 87 72.4
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 5.7e-27 124.0 87 71.3
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 5.7e-27 124.0 86 75.6
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 7.5e-27 123.6 87 72.4
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 7.5e-27 123.6 87 74.7
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 7.5e-27 123.6 86 74.4
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 9.7e-27 123.2 87 71.3
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 9.7e-27 123.2 87 74.7
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 9.7e-27 123.2 87 74.7
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 9.7e-27 123.2 86 73.3
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 9.7e-27 123.2 86 73.3
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.3e-26 122.9 86 74.4
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 1.7e-26 122.5 87 72.4
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 1.7e-26 122.5 87 71.3
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 1.7e-26 122.5 87 71.3
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 1.7e-26 122.5 87 73.6
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 2.8e-26 121.7 87 72.4
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 2.8e-26 121.7 87 72.4
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 3.7e-26 121.3 87 71.3
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 4.8e-26 120.9 87 71.3
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 6.3e-26 120.6 87 72.4
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 6.3e-26 120.6 85 72.9
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 6.3e-26 120.6 87 71.3
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 6.3e-26 120.6 87 71.3
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 8.3e-26 120.2 86 72.1
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 8.3e-26 120.2 87 70.1
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 8.3e-26 120.2 87 70.1
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.1e-25 119.8 88 70.5
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 1.1e-25 119.8 87 71.3
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.1e-25 119.8 87 72.4
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.4e-25 119.4 87 70.1
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 1.4e-25 119.4 87 71.3
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.8e-25 119.0 87 71.3
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 1.8e-25 119.0 86 68.6
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 3.1e-25 118.2 85 69.4
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 3.1e-25 118.2 87 70.1
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 4.1e-25 117.9 87 69.0
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 4.1e-25 117.9 82 76.8
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 5.3e-25 117.5 87 70.1
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 5.3e-25 117.5 87 67.8
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.0e-25 117.1 88 70.5
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.0e-25 117.1 81 72.8
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.0e-25 117.1 87 66.7
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 7.0e-25 117.1 82 72.0
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 7.0e-25 117.1 87 71.3
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 9.1e-25 116.7 86 66.3
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 9.1e-25 116.7 83 77.1
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 9.1e-25 116.7 87 67.8
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 9.1e-25 116.7 86 72.1
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-24 115.9 87 70.1
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 1.6e-24 115.9 87 70.1
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 1.6e-24 115.9 87 70.1
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 1.6e-24 115.9 87 70.1
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 1.6e-24 115.9 87 70.1
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 2.0e-24 115.5 87 69.0
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 2.0e-24 115.5 87 69.0
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 2.0e-24 115.5 87 69.0
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 2.0e-24 115.5 87 69.0
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 2.7e-24 115.2 82 73.2
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 3.5e-24 114.8 87 67.8
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 3.5e-24 114.8 87 67.8
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 3.5e-24 114.8 87 67.8
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 3.5e-24 114.8 87 70.1
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 4.5e-24 114.4 87 67.8
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 4.5e-24 114.4 87 67.8
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 4.5e-24 114.4 87 67.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 5.9e-24 114.0 88 67.0
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.9e-24 114.0 87 67.8
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 1.0e-23 113.2 87 67.8
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.0e-23 113.2 82 72.0
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.3e-23 112.8 87 66.7
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.3e-23 112.8 87 66.7
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 1.3e-23 112.8 87 66.7
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 2.2e-23 112.1 87 71.3
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 3.8e-23 111.3 87 65.5
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 1.5e-22 109.4 88 62.5
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 3.2e-22 108.2 84 66.7
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 9.4e-22 106.7 81 66.7
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 1.6e-21 105.9 64 81.2
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 8.0e-21 103.6 85 64.7
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 1.8e-20 102.4 83 67.5
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 4.0e-20 101.3 58 82.8
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 1.3e-18 96.3 79 63.3
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 6.6e-15 84.0 53 73.6
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.1e-14 83.2 53 64.2
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 3.6e-13 78.2 65 56.9
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 2.3e-12 75.5 52 65.4
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.4e-09 66.2 37 86.5
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 2.0e-08 62.4 54 63.0
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 9.5e-06 53.5 54 55.6


User provided reference genes

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