Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G080600 Glycine max HOM05D003576 ORTHO05D004124 1.6e-35 152.1 73 100.0
Glyma.02G074100 Glycine max HOM05D003576 ORTHO05D004124 5.2e-26 120.6 57 96.5
Glyma.16G155600 Glycine max HOM05D003576 ORTHO05D004124 2.4e-23 111.7 57 89.5
Lalb_Chr01g0010001 Lupinus albus HOM05D003576 ORTHO05D004124 2.5e-20 101.7 58 79.3
Ca_27771_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 3.6e-19 97.8 57 82.5
Medtr6g033535 Medicago truncatula HOM05D003576 ORTHO05D004124 3.6e-19 97.8 57 80.7
Ca_07562_v3 Cicer arietinum L. HOM05D003576 ORTHO05D004124 6.1e-19 97.1 57 80.7
Phvul.004G083500 Phaseolus vulgaris HOM05D003576 ORTHO05D004124 2.3e-18 95.1 63 74.6
Psat1g000040 Pisum sativum HOM05D003576 ORTHO05D004124 4.0e-18 94.4 61 73.8
arahy.Tifrunner.gnm1.ann1.THE0XD Arachis hypogaea HOM05D003576 ORTHO05D004124 6.8e-18 93.6 57 77.2
Psat1g098680 Pisum sativum HOM05D003576 ORTHO05D004124 8.9e-18 93.2 57 77.2
Lalb_Chr03g0035911 Lupinus albus HOM05D003576 ORTHO05D004124 2.0e-17 92.0 57 73.7
TPR.G36712 Trifolium pratense HOM05D003576 ORTHO05D004124 2.6e-17 91.7 57 75.4
arahy.Tifrunner.gnm1.ann1.33B581 Arachis hypogaea HOM05D003576 ORTHO05D004124 3.4e-17 91.3 57 75.4
Cfa021515 Carpinus fangiana HOM05D003576 ORTHO05D004124 3.4e-17 91.3 57 71.9
Haze_16891 Corylus avellana HOM05D003576 ORTHO05D004124 4.9e-16 87.4 57 70.2
arahy.Tifrunner.gnm1.ann1.EX6GR6 Arachis hypogaea HOM05D003576 ORTHO05D004124 1.4e-15 85.9 57 73.7
Lj2g0011631 Lotus japonicus HOM05D003576 ORTHO05D004124 4.1e-15 84.3 51 78.4
Atru.chr12.756 Acer truncatum HOM05D003576 ORTHO05D004124 7.0e-15 83.6 56 66.1
RcHm_v2.0_Chr6g0284661 Rosa chinensis HOM05D003576 ORTHO05D004124 7.8e-14 80.1 57 63.2
QL08p055786 Quercus lobata HOM05D003576 ORTHO05D004124 1.0e-13 79.7 59 62.7
Sabra08G0027100 Salix brachista HOM05D003576 ORTHO05D004124 1.0e-13 79.7 57 59.6
Atru.chr12.780 Acer truncatum HOM05D003576 ORTHO05D004124 5.0e-13 77.4 56 62.5
arahy.Tifrunner.gnm1.ann1.CPN596 Arachis hypogaea HOM05D003576 ORTHO05D004124 6.6e-13 77.0 62 62.9
MD01G1108400 Malus domestica HOM05D003576 ORTHO05D004124 6.6e-13 77.0 56 58.9
Prupe.2G213500 Prunus persica HOM05D003576 ORTHO05D004124 1.5e-12 75.9 56 60.7
FvH4_2g18840 Fragaria vesca HOM05D003576 ORTHO05D004124 1.9e-12 75.5 56 58.9
FAN15G0532 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.9e-12 75.5 56 58.9
FAN24G3530 Fragaria x ananassa HOM05D003576 ORTHO05D004124 1.9e-12 75.5 56 58.9
Ciclev10032124m.g Citrus clementina HOM05D003576 ORTHO05D004124 4.3e-12 74.3 56 58.9
Cpa.g.sc53.83 Carica papaya HOM05D003576 ORTHO05D004124 5.6e-12 73.9 52 65.4
Hma1.2p1_0382F.1_g140100 Hydrangea macrophylla HOM05D003576 ORTHO05D004124 7.3e-12 73.6 54 61.1
CANSAT56G0320 Cannabis sativa HOM05D003576 ORTHO05D004124 9.5e-12 73.2 57 61.4
Potri.008G039500 Populus trichocarpa HOM05D003576 ORTHO05D004124 1.2e-11 72.8 57 56.1
GSVIVG01016273001 Vitis vinifera HOM05D003576 ORTHO05D004124 1.6e-11 72.4 57 57.9
ClCG08G007510 Citrullus lanatus HOM05D003576 ORTHO05D004124 2.1e-11 72.0 57 61.4
Duzib114G0196 Durio zibethinus HOM05D003576 ORTHO05D004124 2.1e-11 72.0 56 58.9
Thecc.10G074000 Theobroma cacao HOM05D003576 ORTHO05D004124 2.1e-11 72.0 57 57.9
CiPaw.02G173900 Carya illinoinensis HOM05D003576 ORTHO05D004124 2.8e-11 71.6 58 58.6
Potri.010G222800 Populus trichocarpa HOM05D003576 ORTHO05D004124 4.7e-11 70.9 58 55.2
vmacro07071 Vaccinium macrocarpon HOM05D003576 ORTHO05D004124 6.1e-11 70.5 56 57.1
Actinidia38283 Actinidia chinensis HOM05D003576 ORTHO05D004124 1.0e-10 69.7 56 55.4
Gohir.A10G205700 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.4e-10 69.3 56 55.4
Gohir.D10G214000 Gossypium hirsutum HOM05D003576 ORTHO05D004124 1.4e-10 69.3 56 55.4
Gorai.011G239400 Gossypium raimondii HOM05D003576 ORTHO05D004124 1.4e-10 69.3 56 55.4
Manes.07G100300 Manihot esculenta HOM05D003576 ORTHO05D004124 1.4e-10 69.3 58 56.9
MD07G1174600 Malus domestica HOM05D003576 ORTHO05D004124 1.8e-10 68.9 52 61.5
Nitab4.5_0000476g0030 Nicotiana tabacum HOM05D003576 ORTHO05D004124 1.5e-09 65.9 56 55.4
CSS0018972 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.0e-09 65.5 57 54.4
CSS0040774 Camellia sinensis var. sinensis HOM05D003576 ORTHO05D004124 2.0e-09 65.5 57 54.4
Lj3A882G53 Lonicera japonica HOM05D003576 ORTHO05D004124 2.0e-09 65.5 57 57.9
TWI15G0705 Tripterygium wilfordii HOM05D003576 ORTHO05D004124 2.0e-09 65.5 56 50.0
THA.LOC104827300 Tarenaya hassleriana HOM05D003576 ORTHO05D004124 3.4e-09 64.7 58 53.4
MSTRG.374 Avicennia marina HOM05D003576 ORTHO05D004124 4.4e-09 64.3 51 60.8
PGR142G1591 Punica granatum HOM05D003576 ORTHO05D004124 5.8e-09 63.9 56 51.8
Peaxi162Scf01175g00019 Petunia axillaris HOM05D003576 ORTHO05D004124 7.5e-09 63.5 56 55.4
Rhsim03G0120500 Rhododendron simsii HOM05D003576 ORTHO05D004124 7.5e-09 63.5 58 53.4
Sabra10G0172200 Salix brachista HOM05D003576 ORTHO05D004124 7.5e-09 63.5 57 54.4
Cc02_g11340 Coffea canephora HOM05D003576 ORTHO05D004124 9.8e-09 63.2 56 57.1
CsaV3_6G036430 Cucumis sativus L. HOM05D003576 ORTHO05D004124 9.8e-09 63.2 50 58.0
DCAR_019104 Daucus carota HOM05D003576 ORTHO05D004124 9.8e-09 63.2 52 53.8
Solyc05g056110.3 Solanum lycopersicum HOM05D003576 ORTHO05D004124 1.7e-08 62.4 56 53.6
Sopen05g034520 Solanum pennellii HOM05D003576 ORTHO05D004124 1.7e-08 62.4 56 53.6
Migut.F01985 Erythranthe guttata HOM05D003576 ORTHO05D004124 3.7e-08 61.2 47 59.6
Sed0006763 Sechium edule HOM05D003576 ORTHO05D004124 3.7e-08 61.2 59 52.5
Dinv36441 Davidia involucrata HOM05D003576 ORTHO05D004124 6.4e-08 60.5 57 54.4
Aa31LG11G7770 Aethionema arabicum HOM05D003576 ORTHO05D004124 1.1e-07 59.7 50 52.0
Eucgr.J01085 Eucalyptus grandis HOM05D003576 ORTHO05D004124 1.1e-07 59.7 47 59.6
Sc20g0001840 Simmondsia chinensis HOM05D003576 ORTHO05D004124 1.4e-07 59.3 57 50.9
Sed0008938 Sechium edule HOM05D003576 ORTHO05D004124 1.9e-07 58.9 47 53.2
Ah.16g106400 Amaranthus hybridus HOM05D003576 ORTHO05D004124 3.2e-07 58.2 48 58.3
CAN.G694.86 Capsicum annuum HOM05D003576 ORTHO05D004124 9.2e-07 56.6 38 68.4
ClCG05G021030 Citrullus lanatus HOM05D003576 ORTHO05D004124 9.2e-07 56.6 51 49.0
CsaV3_5G036280 Cucumis sativus L. HOM05D003576 ORTHO05D004124 9.2e-07 56.6 51 49.0
EL10Ac2g03301 Beta vulgaris HOM05D003576 ORTHO05D004124 2.0e-06 55.5 56 46.4
SHI19520 Sapria himalayana HOM05D003576 ORTHO05D004124 2.7e-06 55.1 67 41.8
AUR62018250 Chenopodium quinoa HOM05D003576 ORTHO05D004124 3.5e-06 54.7 56 44.6
Lsat_1_v5_gn_9_69180 Lactuca sativa HOM05D003576 ORTHO05D004124 6.0e-06 53.9 52 48.1


User provided reference genes

Program Settings