Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G070700 Glycine max HOM05D005572 ORTHO05D007494 1.9e-156 555.8 288 100.0
Phvul.009G226400 Phaseolus vulgaris HOM05D005572 ORTHO05D007494 3.3e-108 395.6 242 86.4
VMungo1309G2532 Vigna mungo HOM05D005572 ORTHO05D007494 1.6e-107 393.3 242 87.6
arahy.Tifrunner.gnm1.ann1.RZTL2L Arachis hypogaea HOM05D005572 ORTHO05D007494 5.4e-103 378.3 234 83.8
arahy.Tifrunner.gnm1.ann1.5ID3PX Arachis hypogaea HOM05D005572 ORTHO05D007494 2.7e-102 375.9 231 84.4
Medtr2g042450 Medicago truncatula HOM05D005572 ORTHO05D007494 8.7e-101 370.9 240 81.7
Lj6g0023702 Lotus japonicus HOM05D005572 ORTHO05D007494 1.9e-100 369.8 239 82.4
Ca_02199_v3 Cicer arietinum L. HOM05D005572 ORTHO05D007494 5.6e-100 368.2 244 80.7
Ciclev10008682m.g Citrus clementina HOM05D005572 ORTHO05D007494 7.4e-100 367.9 245 77.1
Lalb_Chr11g0074191 Lupinus albus HOM05D005572 ORTHO05D007494 7.4e-100 367.9 239 82.0
CANSAT56G0206 Cannabis sativa HOM05D005572 ORTHO05D007494 2.6e-97 359.4 235 80.4
Thhalv10002579m.g Eutrema salsugineum HOM05D005572 ORTHO05D007494 1.1e-95 354.0 237 78.1
Duzib150G0334 Durio zibethinus HOM05D005572 ORTHO05D007494 1.4e-95 353.6 242 77.3
Thecc.09G074800 Theobroma cacao HOM05D005572 ORTHO05D007494 1.4e-95 353.6 239 77.8
Gohir.A13G189700 Gossypium hirsutum HOM05D005572 ORTHO05D007494 2.4e-95 352.8 235 78.3
Gorai.013G223100 Gossypium raimondii HOM05D005572 ORTHO05D007494 3.2e-95 352.4 238 77.3
Duzib187G1546 Durio zibethinus HOM05D005572 ORTHO05D007494 4.2e-95 352.1 239 77.4
Psat1g135040 Pisum sativum HOM05D005572 ORTHO05D007494 4.2e-95 352.1 240 79.2
Atru.chr7.1725 Acer truncatum HOM05D005572 ORTHO05D007494 5.5e-95 351.7 238 78.2
Hma1.2p1_0071F.1_g037830 Hydrangea macrophylla HOM05D005572 ORTHO05D007494 7.1e-95 351.3 233 78.1
TAR624G0716 Trochodendron aralioides HOM05D005572 ORTHO05D007494 1.2e-94 350.5 247 73.7
AL3G43360 Arabidopsis lyrata HOM05D005572 ORTHO05D007494 2.1e-94 349.7 236 76.3
TWI34G1368 Tripterygium wilfordii HOM05D005572 ORTHO05D007494 2.7e-94 349.4 232 77.6
Carub.0008s0467 Capsella rubella HOM05D005572 ORTHO05D007494 6.0e-94 348.2 237 76.8
Manes.16G094100 Manihot esculenta HOM05D005572 ORTHO05D007494 6.0e-94 348.2 234 78.2
Nn8g38598 Nelumbo nucifera HOM05D005572 ORTHO05D007494 6.0e-94 348.2 239 75.7
CiPaw.03G204200 Carya illinoinensis HOM05D005572 ORTHO05D007494 7.9e-94 347.8 238 76.1
COL.COLO4_18078 Corchorus olitorius HOM05D005572 ORTHO05D007494 1.0e-93 347.4 239 75.7
Sp3g24270 Schrenkiella parvula HOM05D005572 ORTHO05D007494 1.0e-93 347.4 237 76.4
Sed0012066 Sechium edule HOM05D005572 ORTHO05D007494 1.0e-93 347.4 247 74.9
Sabra06G0169800 Salix brachista HOM05D005572 ORTHO05D007494 1.8e-93 346.7 235 77.4
Potri.006G219900 Populus trichocarpa HOM05D005572 ORTHO05D007494 3.0e-93 345.9 235 77.9
ClCG03G014970 Citrullus lanatus HOM05D005572 ORTHO05D007494 3.9e-93 345.5 247 74.5
Haze_26030 Corylus avellana HOM05D005572 ORTHO05D007494 3.9e-93 345.5 252 72.2
Eucgr.C00793 Eucalyptus grandis HOM05D005572 ORTHO05D007494 3.9e-93 345.5 235 76.2
CARHR103410 Cardamine hirsuta HOM05D005572 ORTHO05D007494 1.1e-92 344.0 236 75.0
AUR62025268 Chenopodium quinoa HOM05D005572 ORTHO05D007494 1.1e-92 344.0 243 74.1
AUR62043947 Chenopodium quinoa HOM05D005572 ORTHO05D007494 1.1e-92 344.0 243 74.1
Aa31sc209G80 Aethionema arabicum HOM05D005572 ORTHO05D007494 1.5e-92 343.6 242 73.6
CSS0010419 Camellia sinensis var. sinensis HOM05D005572 ORTHO05D007494 7.4e-92 341.3 238 73.9
CSS0017384 Camellia sinensis var. sinensis HOM05D005572 ORTHO05D007494 7.4e-92 341.3 238 73.9
Prupe.7G196300 Prunus persica HOM05D005572 ORTHO05D007494 9.6e-92 340.9 244 70.9
PSO104G0141 Papaver somniferum HOM05D005572 ORTHO05D007494 1.6e-91 340.1 236 76.3
CAN.G432.1 Capsicum annuum HOM05D005572 ORTHO05D007494 2.1e-91 339.7 232 76.7
Peaxi162Scf01343g00158 Petunia axillaris HOM05D005572 ORTHO05D007494 2.1e-91 339.7 232 76.7
QL11p001101 Quercus lobata HOM05D005572 ORTHO05D007494 2.1e-91 339.7 235 74.5
Cpa.g.sc28.23 Carica papaya HOM05D005572 ORTHO05D007494 2.8e-91 339.3 244 72.1
CsaV3_1G041170 Cucumis sativus L. HOM05D005572 ORTHO05D007494 2.8e-91 339.3 247 73.7
Migut.L01574 Erythranthe guttata HOM05D005572 ORTHO05D007494 2.8e-91 339.3 240 75.0
EL10Ac8g19040 Beta vulgaris HOM05D005572 ORTHO05D007494 4.8e-91 338.6 250 72.8
PSO421G0494 Papaver somniferum HOM05D005572 ORTHO05D007494 4.8e-91 338.6 239 74.9
BcaB06g26862 Brassica carinata HOM05D005572 ORTHO05D007494 8.1e-91 337.8 237 74.7
Cc06_g12340 Coffea canephora HOM05D005572 ORTHO05D007494 8.1e-91 337.8 235 74.9
SGA_v2.0_scaffold21G09507 Striga asiatica HOM05D005572 ORTHO05D007494 1.1e-90 337.4 232 77.6
MD15G1219600 Malus domestica HOM05D005572 ORTHO05D007494 1.4e-90 337.0 241 72.2
AUR62028271 Chenopodium quinoa HOM05D005572 ORTHO05D007494 1.8e-90 336.7 238 73.9
Hund26079 Selenicereus undatus HOM05D005572 ORTHO05D007494 1.8e-90 336.7 253 71.5
BcaC06g35936 Brassica carinata HOM05D005572 ORTHO05D007494 2.4e-90 336.3 237 74.3
MD02G1094700 Malus domestica HOM05D005572 ORTHO05D007494 2.4e-90 336.3 241 71.8
Actinidia30232 Actinidia chinensis HOM05D005572 ORTHO05D007494 3.1e-90 335.9 253 72.7
RcHm_v2.0_Chr2g0095391 Rosa chinensis HOM05D005572 ORTHO05D007494 3.1e-90 335.9 244 71.3
GSVIVG01015055001 Vitis vinifera HOM05D005572 ORTHO05D007494 3.1e-90 335.9 242 73.6
Nitab4.5_0006512g0010 Nicotiana tabacum HOM05D005572 ORTHO05D007494 5.3e-90 335.1 233 75.5
C07p09540 Brassica napus HOM05D005572 ORTHO05D007494 6.9e-90 334.7 238 74.4
DCAR_031912 Daucus carota HOM05D005572 ORTHO05D007494 9.0e-90 334.3 235 74.0
A07p06400 Brassica napus HOM05D005572 ORTHO05D007494 1.2e-89 334.0 238 74.4
BraA07t28433Z Brassica rapa HOM05D005572 ORTHO05D007494 1.2e-89 334.0 238 74.4
PGSC0003DMG400025199 Solanum tuberosum HOM05D005572 ORTHO05D007494 2.0e-89 333.2 232 75.0
MSTRG.26475 Avicennia marina HOM05D005572 ORTHO05D007494 2.6e-89 332.8 232 75.4
Sc08g0008940 Simmondsia chinensis HOM05D005572 ORTHO05D007494 2.6e-89 332.8 232 75.0
Ah.14g084870 Amaranthus hybridus HOM05D005572 ORTHO05D007494 3.4e-89 332.4 231 74.9
HanXRQChr01g0010261 Helianthus annuus HOM05D005572 ORTHO05D007494 4.5e-89 332.0 233 73.8
SHI31880 Sapria himalayana HOM05D005572 ORTHO05D007494 4.5e-89 332.0 235 73.2
BolC7t41385H Brassica oleracea HOM05D005572 ORTHO05D007494 5.8e-89 331.6 238 73.9
Nitab4.5_0000507g0030 Nicotiana tabacum HOM05D005572 ORTHO05D007494 7.6e-89 331.3 233 74.7
Sopen08g007790 Solanum pennellii HOM05D005572 ORTHO05D007494 7.6e-89 331.3 232 74.6
PGR142G4103 Punica granatum HOM05D005572 ORTHO05D007494 3.8e-88 328.9 238 72.7
Solyc08g022210.4 Solanum lycopersicum HOM05D005572 ORTHO05D007494 3.8e-88 328.9 232 74.1
Zm00001eb168430 Zea mays HOM05D005572 ORTHO05D007494 6.5e-88 328.2 234 71.8
Cfa002972 Carpinus fangiana HOM05D005572 ORTHO05D007494 1.1e-87 327.4 218 76.6
Aqoxy7G01023 Aquilegia oxysepala HOM05D005572 ORTHO05D007494 1.4e-87 327.0 232 73.3
vmacro17127 Vaccinium macrocarpon HOM05D005572 ORTHO05D007494 2.5e-87 326.2 233 73.0
FvH4_1g08940 Fragaria vesca HOM05D005572 ORTHO05D007494 5.5e-87 325.1 238 70.6
FAN26G2673 Fragaria x ananassa HOM05D005572 ORTHO05D007494 5.5e-87 325.1 250 68.8
Rhsim05G0005700 Rhododendron simsii HOM05D005572 ORTHO05D007494 7.1e-87 324.7 233 73.0
FAN23G2476 Fragaria x ananassa HOM05D005572 ORTHO05D007494 1.6e-86 323.6 238 70.2
unitig_699.g19268 Utricularia gibba HOM05D005572 ORTHO05D007494 6.7e-85 318.2 234 70.5
TPR.G29960 Trifolium pratense HOM05D005572 ORTHO05D007494 9.6e-84 314.3 261 66.3
ECA234G0641 Erigeron canadensis HOM05D005572 ORTHO05D007494 2.1e-83 313.2 244 68.0
Os11g0216900 Oryza sativa ssp. japonica HOM05D005572 ORTHO05D007494 8.2e-83 311.2 231 68.8
FAN26G3294 Fragaria x ananassa HOM05D005572 ORTHO05D007494 9.0e-82 307.8 270 63.0
Lsat_1_v5_gn_5_140080 Lactuca sativa HOM05D005572 ORTHO05D007494 1.2e-81 307.4 234 70.9
SEGI_13708 Sequoiadendron giganteum HOM05D005572 ORTHO05D007494 2.6e-81 306.2 243 67.5
AUR62025270 Chenopodium quinoa HOM05D005572 ORTHO05D007494 1.0e-80 304.3 265 63.4
AUR62043948 Chenopodium quinoa HOM05D005572 ORTHO05D007494 1.0e-80 304.3 265 63.4
MELO3C015531.2 Cucumis melo HOM05D005572 ORTHO05D007494 1.3e-80 303.9 247 68.8
CDE06G1357 Ceratophyllum demersum HOM05D005572 ORTHO05D007494 2.2e-80 303.1 235 66.4
MBI19_g05299_MAGBIO Magnolia biondii HOM05D005572 ORTHO05D007494 5.5e-79 298.5 235 68.1
DCAR_024760 Daucus carota HOM05D005572 ORTHO05D007494 1.0e-77 294.3 212 73.1
ATR0053G061 Amborella trichopoda HOM05D005572 ORTHO05D007494 8.7e-77 291.2 232 67.2
SMO340G0231 Selaginella moellendorffii HOM05D005572 ORTHO05D007494 7.7e-73 278.1 234 66.2
Oeu005167.1 Olea europaea HOM05D005572 ORTHO05D007494 1.7e-72 276.9 195 75.4
AUR62025269 Chenopodium quinoa HOM05D005572 ORTHO05D007494 8.5e-72 274.6 220 68.2
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 2.5e-71 273.1 230 62.2
AT2G05830 Arabidopsis thaliana HOM05D005572 ORTHO05D007494 2.5e-71 273.1 194 73.7
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.8e-69 266.9 234 59.8
Gorai.001G015800 Gossypium raimondii HOM05D005572 ORTHO05D007494 1.1e-68 264.2 194 73.2
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 7.4e-68 261.5 241 60.6
Gohir.D07G015000 Gossypium hirsutum HOM05D005572 ORTHO05D007494 3.7e-67 259.2 194 72.7
Lj4C914T8 Lonicera japonica HOM05D005572 ORTHO05D007494 2.0e-65 253.4 214 65.9
HPP92_019421 Vanilla planifolia HOM05D005572 ORTHO05D007494 2.3e-61 240.0 208 61.5
Cfa026811 Carpinus fangiana HOM05D005572 ORTHO05D007494 4.4e-60 235.7 237 55.3
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 5.7e-60 235.3 246 53.7
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 6.5e-56 221.9 238 52.1
Hma1.2p1_0071F.1_g037840 Hydrangea macrophylla HOM05D005572 ORTHO05D007494 8.5e-56 221.5 208 59.6
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.0e-52 210.3 242 49.6
HPP92_019441 Vanilla planifolia HOM05D005572 ORTHO05D007494 4.1e-50 202.6 151 67.5
Lsat_1_v5_gn_5_98660 Lactuca sativa HOM05D005572 ORTHO05D007494 3.0e-45 186.4 233 49.4
Haze_27242 Corylus avellana HOM05D005572 ORTHO05D007494 2.6e-44 183.3 235 46.0
Dinv25545 Davidia involucrata HOM05D005572 ORTHO05D007494 1.8e-42 177.2 144 68.8
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 1.1e-39 167.9 145 60.7
Lsat_1_v5_gn_4_4901 Lactuca sativa HOM05D005572 ORTHO05D007494 2.1e-38 163.7 113 73.5
Gohir.A07G015300 Gossypium hirsutum HOM05D005572 ORTHO05D007494 5.2e-37 159.1 105 75.2
Lsat_1_v5_gn_7_37420 Lactuca sativa HOM05D002703 ORTHO05D002921 2.6e-36 156.8 143 60.1
Hma1.2p1_0179F.1_g079420 Hydrangea macrophylla HOM05D005572 ORTHO05D007494 8.3e-35 151.8 161 55.3
Hma1.2p1_0071F.1_g037820 Hydrangea macrophylla HOM05D005572 ORTHO05D007494 2.5e-31 140.2 99 75.8
Lsat_1_v5_gn_7_51901 Lactuca sativa HOM05D005572 ORTHO05D000418 8.9e-29 131.7 100 68.0
Dinv25546 Davidia involucrata HOM05D005572 ORTHO05D007494 4.4e-28 129.4 73 83.6
SalBow7G2723 Salvia bowleyana HOM05D005572 ORTHO05D007494 4.4e-28 129.4 99 69.7
C06p36700 Brassica napus HOM05D005572 ORTHO05D032868 3.7e-27 126.3 121 62.0
BolC6t38780H Brassica oleracea HOM05D005572 ORTHO05D032868 2.7e-25 120.2 122 59.0
BcaC08g45872 Brassica carinata HOM05D005572 ORTHO05D032868 4.6e-25 119.4 147 52.4
Lsat_1_v5_gn_2_74881 Lactuca sativa HOM05D005572 ORTHO05D007494 1.5e-23 114.4 112 58.0
Haze_26516 Corylus avellana HOM05D005572 ORTHO05D007494 4.7e-22 109.4 151 38.4
Lsat_1_v5_gn_5_60580 Lactuca sativa HOM05D003482 ORTHO05D004194 4.9e-19 99.4 63 76.2
C02p28210 Brassica napus HOM05D005572 ORTHO05D042727 1.3e-08 64.7 48 64.6
BolC2t08866H Brassica oleracea HOM05D005572 ORTHO05D042727 1.3e-08 64.7 48 64.6
Psat3g051440 Pisum sativum HOM05D005615 ORTHO05D031631 3.3e-07 60.1 70 52.9


User provided reference genes

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