Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 6.7e-177 624.0 340 100.0
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 7.2e-155 550.8 339 89.4
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 2.6e-152 542.3 343 86.3
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 5.7e-144 514.6 318 86.8
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 4.9e-119 431.8 347 68.6
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 4.6e-117 425.2 343 71.1
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 5.6e-115 418.3 336 69.9
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.5e-112 410.2 311 70.1
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 7.6e-112 407.9 323 70.6
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.6e-109 400.2 303 68.6
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 7.8e-109 397.9 307 69.4
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 1.3e-108 397.1 327 64.8
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.7e-108 396.7 323 65.3
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 8.7e-108 394.4 318 67.3
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.1e-107 394.0 302 68.5
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.1e-107 394.0 318 67.6
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 4.3e-107 392.1 303 67.7
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 4.3e-107 392.1 324 67.6
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.6e-107 391.7 305 72.5
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 7.3e-107 391.3 315 67.6
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 1.3e-106 390.6 305 72.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 4.8e-106 388.7 305 71.1
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 8.1e-106 387.9 305 68.2
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 3.4e-104 382.5 288 67.7
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 5.8e-104 381.7 318 63.8
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.2e-103 379.8 328 63.4
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.8e-103 379.0 324 65.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 6.4e-103 378.3 307 63.5
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 8.4e-103 377.9 326 64.7
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 8.4e-103 377.9 293 68.3
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.1e-102 377.5 300 65.0
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.4e-102 377.1 305 69.5
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.4e-102 377.1 320 63.4
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.9e-102 376.7 312 66.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 3.2e-102 375.9 288 69.1
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 4.2e-102 375.6 351 63.2
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 5.4e-102 375.2 273 70.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.2e-101 374.0 305 67.5
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 3.5e-101 372.5 303 65.3
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.0e-100 370.9 304 65.1
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.9e-100 369.0 317 64.7
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 5.1e-100 368.6 324 64.2
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 1.5e-99 367.1 291 67.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 3.3e-99 365.9 316 61.1
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 5.6e-99 365.2 314 65.0
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 7.3e-99 364.8 320 65.9
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 8.1e-98 361.3 301 67.4
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 2.4e-97 359.8 305 66.6
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 9.0e-97 357.8 302 64.2
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.5e-96 357.1 304 66.1
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.0e-96 356.7 351 61.0
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 9.9e-96 354.4 264 68.6
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.9e-95 352.8 306 65.0
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 1.6e-93 347.1 336 62.5
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 6.0e-93 345.1 315 63.5
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 7.9e-93 344.7 226 74.8
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.3e-92 344.0 264 73.9
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 3.0e-92 342.8 233 71.2
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.9e-92 342.4 222 75.7
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 6.7e-92 341.7 300 65.7
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 8.7e-92 341.3 314 60.5
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.1e-91 340.9 283 66.4
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.5e-91 340.5 290 61.0
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 1.6e-90 337.0 252 67.9
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 2.1e-90 336.7 306 60.8
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 6.2e-90 335.1 309 64.1
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.1e-89 334.3 250 69.2
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.1e-89 334.3 323 58.5
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.4e-89 333.2 358 54.7
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 3.1e-89 332.8 246 69.5
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 4.0e-89 332.4 305 63.3
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.5e-88 330.5 314 59.9
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 4.5e-88 328.9 306 63.1
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 4.5e-88 328.9 272 66.2
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 2.2e-87 326.6 311 62.4
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.9e-87 326.2 263 70.0
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 6.5e-87 325.1 311 62.1
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.9e-86 323.6 318 61.6
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.7e-85 319.7 282 61.7
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 7.9e-85 318.2 316 55.7
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.8e-84 317.0 305 61.0
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 2.3e-84 316.6 305 61.0
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 3.9e-84 315.8 305 60.7
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 1.5e-83 313.9 317 58.0
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 2.5e-83 313.2 313 60.1
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 5.7e-83 312.0 310 61.0
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 9.6e-83 311.2 227 67.0
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 1.6e-82 310.5 248 69.0
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 3.7e-82 309.3 320 57.8
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 3.7e-82 309.3 320 57.8
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 3.7e-82 309.3 301 58.5
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 1.1e-81 307.8 342 56.4
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 3.8e-79 299.3 310 57.7
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 5.5e-78 295.4 269 60.2
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 9.3e-78 294.7 247 61.9
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.6e-77 293.9 290 56.2
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 2.1e-77 293.5 306 58.5
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.1e-77 293.5 289 56.4
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 2.1e-77 293.5 294 57.5
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.7e-77 293.1 328 54.6
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 1.0e-76 291.2 328 53.7
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.0e-76 291.2 328 53.7
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 3.3e-75 286.2 305 59.3
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 9.7e-75 284.6 301 53.8
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 9.0e-73 278.1 233 58.8
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 2.0e-72 276.9 308 54.2
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 2.2e-71 273.5 334 52.7
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.6e-69 266.2 182 69.8
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 4.6e-69 265.8 295 51.9
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 1.1e-65 254.6 306 54.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 3.1e-65 253.1 331 44.7
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 5.3e-57 225.7 237 49.8
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 5.3e-57 225.7 316 44.9
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.0e-56 223.8 311 43.1
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 3.8e-55 219.5 134 77.6
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 7.2e-54 215.3 363 46.3
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.3e-50 204.5 268 47.4
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 4.2e-46 189.5 124 70.2
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 1.0e-44 184.9 152 63.2
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.2e-40 171.4 151 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.0e-39 168.3 266 41.0
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 4.4e-35 152.9 177 44.1
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 4.4e-35 152.9 95 73.7
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 4.4e-35 152.9 97 72.2
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.3e-34 151.4 324 33.6
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-26 123.6 252 33.3
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 5.9e-24 115.9 168 51.2
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 6.6e-23 112.5 196 33.2
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 6.6e-23 112.5 70 74.3
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 2.3e-20 104.0 145 45.5
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 3.2e-17 93.6 140 43.6
PRCOL_00003979 Prasinoderma coloniale HOM05D005493 ORTHO05D049008 2.1e-13 80.9 199 32.2
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.2e-12 76.3 226 29.6
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 7.5e-11 72.4 71 54.9
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.1e-09 68.6 216 27.3
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 3.0e-07 60.5 85 45.9
MCO11G471 Micromonas commoda HOM05D050729 ORTHO05D049153 5.1e-07 59.7 112 28.6
PRCOL_00005492 Prasinoderma coloniale HOM05D005493 ORTHO05D333432 5.1e-07 59.7 203 23.6


User provided reference genes

Program Settings