Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 2.2e-238 828.6 408 100.0
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 7.4e-231 803.5 408 97.1
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 1.3e-227 792.7 408 93.9
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.3e-227 792.7 406 94.6
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.0e-227 790.8 408 94.9
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 2.1e-225 785.4 408 93.4
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 4.7e-225 784.3 408 93.1
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 1.0e-224 783.1 408 92.9
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 8.8e-224 780.0 408 93.1
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 1.1e-223 779.6 408 92.6
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.3e-222 776.2 406 91.9
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 1.3e-222 776.2 406 92.1
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 1.7e-222 775.8 406 92.6
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.7e-222 775.8 408 92.4
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 4.8e-222 774.2 398 94.0
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 6.3e-222 773.9 408 91.7
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 1.1e-221 773.1 408 92.2
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 2.6e-220 768.5 407 90.2
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.9e-220 767.3 406 90.1
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 5.9e-220 767.3 408 90.0
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 7.7e-220 766.9 409 91.9
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.3e-219 766.1 406 89.9
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 2.2e-219 765.4 406 91.6
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 2.2e-219 765.4 406 89.7
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 2.9e-219 765.0 408 89.7
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 90.2
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 5.0e-219 764.2 408 89.5
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 8.5e-219 763.5 408 89.2
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.5e-219 763.5 408 89.7
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.1e-218 763.1 408 89.2
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 1.1e-218 763.1 408 90.0
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 1.1e-218 763.1 406 89.4
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 1.5e-218 762.7 406 90.6
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.5e-218 762.7 408 89.5
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.0
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.9e-218 762.3 408 89.5
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 3.2e-218 761.5 406 89.4
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 4.2e-218 761.1 408 89.5
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.5e-218 760.8 406 89.9
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 5.5e-218 760.8 408 89.0
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 9.4e-218 760.0 406 89.2
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.6e-217 759.2 407 88.5
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 4.7e-217 757.7 408 88.7
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 8.0e-217 756.9 408 88.5
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 8.0e-217 756.9 405 89.6
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.3e-216 755.4 406 88.4
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 4.0e-216 754.6 406 88.7
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 5.2e-216 754.2 408 87.7
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 6.7e-216 753.8 406 88.7
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 6.7e-216 753.8 409 89.0
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 8.8e-216 753.4 408 88.5
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 1.5e-215 752.7 406 88.4
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 1.7e-214 749.2 406 87.9
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 3.7e-214 748.0 406 88.2
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 3.7e-214 748.0 406 88.2
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 4.8e-214 747.7 406 87.9
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 4.8e-214 747.7 409 88.5
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 6.3e-214 747.3 406 87.4
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 88.3
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 1.8e-213 745.7 406 88.2
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 1.8e-213 745.7 408 88.7
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.8e-213 745.7 406 88.7
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.4e-213 745.3 450 82.7
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.4e-213 745.3 406 86.9
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 3.1e-213 745.0 406 87.2
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 4.1e-213 744.6 406 87.4
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 88.3
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 4.1e-213 744.6 409 87.0
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 7.0e-213 743.8 410 87.6
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 7.0e-213 743.8 406 87.4
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 7.0e-213 743.8 422 85.8
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.2e-212 743.0 406 87.4
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 1.6e-212 742.7 409 87.3
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 1.6e-212 742.7 408 87.3
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 1.6e-212 742.7 404 88.1
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 2.7e-212 741.9 409 87.3
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 3.5e-212 741.5 409 87.5
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 4.5e-212 741.1 409 87.8
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 7.7e-212 740.3 406 86.9
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.0e-211 740.0 406 87.2
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 87.3
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.7e-211 739.2 409 87.3
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 6.5e-211 737.3 409 87.0
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 8.5e-211 736.9 409 86.8
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 1.5e-210 736.1 409 87.0
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 2.5e-210 735.3 407 87.5
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 7.2e-210 733.8 410 86.8
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 7.2e-210 733.8 410 86.8
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 7.2e-210 733.8 407 86.5
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 9.4e-210 733.4 407 86.5
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 1.2e-209 733.0 410 87.1
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.6e-209 732.6 408 85.3
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.6e-209 732.6 406 85.5
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 2.1e-209 732.3 410 86.8
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.1e-209 732.3 421 84.8
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 2.7e-209 731.9 409 85.6
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 2.7e-209 731.9 408 85.0
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 4.7e-209 731.1 408 86.0
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 6.1e-209 730.7 406 85.7
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.0e-208 729.9 406 85.5
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 1.4e-208 729.6 433 82.7
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 1.8e-208 729.2 406 85.2
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 1.8e-208 729.2 409 85.8
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 8.8e-208 726.9 452 80.1
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 4.4e-207 724.5 473 76.7
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.2e-206 722.2 408 83.6
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 2.8e-206 721.8 408 83.8
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 3.1e-205 718.4 383 89.8
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 5.4e-205 717.6 379 91.8
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.4e-205 717.6 407 83.3
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 1.0e-203 713.4 407 82.3
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 1.6e-201 706.1 388 87.4
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 1.8e-200 702.6 382 87.4
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 2.3e-200 702.2 517 70.0
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 6.3e-198 694.1 410 81.7
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 8.3e-198 693.7 449 75.3
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 5.4e-197 691.0 410 83.2
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 1.0e-195 686.8 417 80.6
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 5.6e-194 681.0 358 90.5
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 1.7e-190 669.5 356 89.6
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 8.3e-190 667.2 391 81.1
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.7e-187 659.4 358 88.3
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 1.7e-187 659.4 409 75.8
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 4.3e-186 654.8 402 77.9
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 2.3e-184 649.0 408 78.7
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.4e-175 618.6 412 71.8
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 8.3e-174 614.0 410 71.5
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 6.0e-172 607.8 406 72.9
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.5e-170 603.2 405 69.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 5.2e-168 594.7 317 89.9
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.3e-163 579.3 387 70.8
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.9e-157 559.7 409 70.7
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 3.5e-156 555.4 388 72.2
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.8e-147 526.6 298 84.6
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 2.2e-142 509.6 310 81.6
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 8.4e-142 507.7 400 61.5
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 4.1e-128 462.2 245 90.2
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 8.5e-126 454.5 368 60.6
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 5.5e-125 451.8 255 84.3
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 3.3e-122 442.6 385 57.4
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 4.1e-120 435.6 238 88.7
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 1.0e-118 431.0 227 91.6
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 1.4e-107 394.0 239 80.8
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 1.4e-99 367.5 197 87.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 2.0e-79 300.4 404 42.6
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 2.9e-73 280.0 390 43.3
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 8.3e-73 278.5 183 74.9
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 1.9e-69 267.3 180 71.7
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 1.4e-56 224.6 141 74.5
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 2.4e-56 223.8 140 75.0
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 1.2e-55 221.5 124 82.3
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.4e-49 198.7 104 91.3
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 1.6e-20 104.8 58 81.0
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 3.1e-19 100.5 128 46.9
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 6.3e-12 76.3 334 23.7
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 5.3e-11 73.2 327 22.6


User provided reference genes

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