Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G358766 Glycine max HOM05D003564 ORTHO05D015539 1.5e-77 292.7 146 100.0
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 1.5e-56 223.0 148 76.4
QL06p012801 Quercus lobata HOM05D003564 ORTHO05D005332 9.6e-56 220.3 148 75.7
Potri.010G148100 Populus trichocarpa HOM05D003564 ORTHO05D005332 1.6e-55 219.5 148 75.7
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 3.7e-55 218.4 148 74.3
GSVIVG01034964001 Vitis vinifera HOM05D003564 ORTHO05D005332 1.1e-54 216.9 148 73.6
CANSAT78G0776 Cannabis sativa HOM05D003564 ORTHO05D005332 3.1e-54 215.3 148 73.0
Manes.15G001800 Manihot esculenta HOM05D003564 ORTHO05D005332 3.1e-54 215.3 148 73.6
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 3.1e-54 215.3 148 73.6
TWI09G1018 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 4.0e-54 214.9 148 73.0
COL.COLO4_34584 Corchorus olitorius HOM05D003564 ORTHO05D005332 6.9e-54 214.2 148 73.6
Manes.03G206800 Manihot esculenta HOM05D003564 ORTHO05D005332 6.9e-54 214.2 148 74.3
TWI73G0893 Tripterygium wilfordii HOM05D003564 ORTHO05D005332 6.9e-54 214.2 148 73.6
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 9.0e-54 213.8 148 73.6
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 9.0e-54 213.8 148 73.6
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 9.0e-54 213.8 148 73.0
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 1.2e-53 213.4 148 73.0
CANSAT21G1208 Cannabis sativa HOM05D003564 ORTHO05D005332 2.0e-53 212.6 148 72.3
Cpa.g.sc9.29 Carica papaya HOM05D003564 ORTHO05D005332 2.6e-53 212.2 148 72.3
CsaV3_3G015300 Cucumis sativus L. HOM05D003564 ORTHO05D005332 3.4e-53 211.8 148 73.0
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 3.4e-53 211.8 148 72.3
CANSAT80G1613 Cannabis sativa HOM05D003564 ORTHO05D005332 5.8e-53 211.1 148 73.0
AUR62039254 Chenopodium quinoa HOM05D003564 ORTHO05D005332 5.8e-53 211.1 148 72.3
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 5.8e-53 211.1 148 72.3
Lalb_Chr12g0200801 Lupinus albus HOM05D003564 ORTHO05D005332 5.8e-53 211.1 148 73.6
MELO3C006726.2 Cucumis melo HOM05D003564 ORTHO05D005332 7.6e-53 210.7 148 73.0
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 7.6e-53 210.7 148 73.6
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 7.6e-53 210.7 148 73.0
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 7.6e-53 210.7 148 73.0
Lalb_Chr07g0181971 Lupinus albus HOM05D003564 ORTHO05D005332 7.6e-53 210.7 148 73.0
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 9.9e-53 210.3 148 71.6
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.3e-52 209.9 148 71.6
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 1.7e-52 209.5 148 72.3
Sabra10G0114300 Salix brachista HOM05D003564 ORTHO05D005332 1.7e-52 209.5 148 71.6
arahy.Tifrunner.gnm1.ann1.5PE0GF Arachis hypogaea HOM05D003564 ORTHO05D005332 2.2e-52 209.1 148 71.6
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 2.2e-52 209.1 148 71.6
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 2.2e-52 209.1 148 71.6
ClCG05G006670 Citrullus lanatus HOM05D003564 ORTHO05D005332 2.2e-52 209.1 148 73.0
Dinv15142 Davidia involucrata HOM05D003564 ORTHO05D005332 2.2e-52 209.1 148 72.3
CSS0008875 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 2.9e-52 208.8 148 72.3
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 2.9e-52 208.8 148 73.0
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 2.9e-52 208.8 148 70.3
Eucgr.H04065 Eucalyptus grandis HOM05D003564 ORTHO05D005332 3.8e-52 208.4 148 70.9
Gohir.A09G241000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 3.8e-52 208.4 148 71.6
Hma1.2p1_0078F.1_g039870 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.8e-52 208.4 148 70.9
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 3.8e-52 208.4 148 72.3
TAR633G1064 Trochodendron aralioides HOM05D003564 ORTHO05D005332 3.8e-52 208.4 148 70.9
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 4.9e-52 208.0 148 71.6
arahy.Tifrunner.gnm1.ann1.W3XDQ4 Arachis hypogaea HOM05D003564 ORTHO05D005332 6.4e-52 207.6 148 70.9
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 6.4e-52 207.6 148 70.9
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 6.4e-52 207.6 148 73.6
BraA01t04431Z Brassica rapa HOM05D003564 ORTHO05D005332 8.4e-52 207.2 148 70.3
AUR62016236 Chenopodium quinoa HOM05D003564 ORTHO05D005332 8.4e-52 207.2 148 70.9
Sed0008581 Sechium edule HOM05D003564 ORTHO05D005332 8.4e-52 207.2 148 70.3
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 8.4e-52 207.2 148 70.3
PGR004G2289 Punica granatum HOM05D003564 ORTHO05D005332 1.1e-51 206.8 148 70.9
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 1.1e-51 206.8 148 69.6
Gohir.D09G241800 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.4e-51 206.5 148 70.9
Hma1.2p1_0013F.1_g008310 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 1.4e-51 206.5 148 71.6
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 1.9e-51 206.1 148 71.6
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 1.9e-51 206.1 148 71.6
Potri.008G102800 Populus trichocarpa HOM05D003564 ORTHO05D005332 1.9e-51 206.1 147 72.1
SalBow5G4452 Salvia bowleyana HOM05D003564 ORTHO05D005332 1.9e-51 206.1 148 70.9
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 2.4e-51 205.7 148 71.6
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 3.2e-51 205.3 148 68.9
Hma1.2p1_1400F.1_g280900 Hydrangea macrophylla HOM05D003564 ORTHO05D005332 3.2e-51 205.3 148 70.3
PSO421G0363 Papaver somniferum HOM05D003564 ORTHO05D005332 3.2e-51 205.3 148 71.6
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 3.2e-51 205.3 148 72.3
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 4.2e-51 204.9 148 70.3
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 4.2e-51 204.9 148 70.3
PSO673G0015 Papaver somniferum HOM05D003564 ORTHO05D005332 5.5e-51 204.5 148 70.9
Actinidia13349 Actinidia chinensis HOM05D003564 ORTHO05D005332 7.1e-51 204.1 148 70.3
Ah.07g201490 Amaranthus hybridus HOM05D003564 ORTHO05D005332 7.1e-51 204.1 148 68.9
BNapus_Darmor_BZH_scaffold_118p00030 Brassica napus HOM05D003564 ORTHO05D001609 7.1e-51 204.1 148 69.6
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 7.1e-51 204.1 148 70.9
Thecc.04G304400 Theobroma cacao HOM05D003564 ORTHO05D005332 7.1e-51 204.1 148 71.6
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 9.3e-51 203.8 150 72.0
Gorai.006G265300 Gossypium raimondii HOM05D003564 ORTHO05D005332 9.3e-51 203.8 148 69.6
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 1.2e-50 203.4 148 68.9
Cc03_g00640 Coffea canephora HOM05D003564 ORTHO05D005332 1.2e-50 203.4 150 70.0
Gohir.D01G023559 Gossypium hirsutum HOM05D003564 ORTHO05D005332 1.2e-50 203.4 148 69.6
Gorai.002G030900 Gossypium raimondii HOM05D003564 ORTHO05D005332 1.2e-50 203.4 148 69.6
Sc13g0007180 Simmondsia chinensis HOM05D003564 ORTHO05D005332 1.2e-50 203.4 148 70.9
vmacro15172 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 1.2e-50 203.4 148 70.3
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 1.6e-50 203.0 148 68.9
BolC1t05602H Brassica oleracea HOM05D003564 ORTHO05D005332 2.1e-50 202.6 148 68.9
Gohir.A01G035000 Gossypium hirsutum HOM05D003564 ORTHO05D005332 2.7e-50 202.2 148 69.6
HanXRQChr05g0146131 Helianthus annuus HOM05D003564 ORTHO05D005332 2.7e-50 202.2 148 70.9
PSO724G1094 Papaver somniferum HOM05D003564 ORTHO05D005332 2.7e-50 202.2 148 71.6
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 2.7e-50 202.2 148 69.6
TAR362G0511 Trochodendron aralioides HOM05D003564 ORTHO05D005332 2.7e-50 202.2 148 69.6
PGR031G2439 Punica granatum HOM05D003564 ORTHO05D005332 3.5e-50 201.8 148 69.6
MBI19_g03266_MAGBIO Magnolia biondii HOM05D003564 ORTHO05D005332 4.6e-50 201.4 148 68.9
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 4.6e-50 201.4 148 70.9
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 4.6e-50 201.4 148 70.3
Hund03137 Selenicereus undatus HOM05D003564 ORTHO05D005332 4.6e-50 201.4 148 70.9
Peaxi162Scf00228g00614 Petunia axillaris HOM05D003564 ORTHO05D005332 6.0e-50 201.1 148 68.9
ATR0693G053 Amborella trichopoda HOM05D003564 ORTHO05D005332 7.9e-50 200.7 148 68.9
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 7.9e-50 200.7 148 68.2
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 7.9e-50 200.7 148 69.6
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 7.9e-50 200.7 148 68.9
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 1.0e-49 200.3 148 68.9
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.8e-49 199.5 148 70.3
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 2.3e-49 199.1 148 68.9
Peaxi162Scf00164g00106 Petunia axillaris HOM05D003564 ORTHO05D005332 2.3e-49 199.1 148 68.9
Sed0006353 Sechium edule HOM05D003564 ORTHO05D005332 2.3e-49 199.1 148 68.9
Actinidia18464 Actinidia chinensis HOM05D003564 ORTHO05D005332 3.0e-49 198.7 148 68.9
Ciclev10004814m.g Citrus clementina HOM05D003564 ORTHO05D005332 3.0e-49 198.7 148 68.2
Nitab4.5_0000655g0040 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.0e-49 198.7 148 67.6
Nitab4.5_0005111g0010 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.0e-49 198.7 148 67.6
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 3.0e-49 198.7 148 68.9
Nitab4.5_0004165g0030 Nicotiana tabacum HOM05D003564 ORTHO05D005332 3.9e-49 198.4 150 68.7
Solyc01g058390.3 Solanum lycopersicum HOM05D003564 ORTHO05D005332 3.9e-49 198.4 148 67.6
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 5.1e-49 198.0 148 67.6
Rhsim04G0241100 Rhododendron simsii HOM05D003564 ORTHO05D005332 5.1e-49 198.0 148 67.6
PGSC0003DMG400017095 Solanum tuberosum HOM05D003564 ORTHO05D005332 5.1e-49 198.0 148 68.2
PSO210G4867 Papaver somniferum HOM05D003564 ORTHO05D005332 6.7e-49 197.6 148 68.9
vmacro07948 Vaccinium macrocarpon HOM05D003564 ORTHO05D005332 6.7e-49 197.6 148 66.9
Aqoxy2G02668 Aquilegia oxysepala HOM05D003564 ORTHO05D005332 8.7e-49 197.2 148 67.6
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.1e-48 196.8 148 67.6
Hund11987 Selenicereus undatus HOM05D003564 ORTHO05D005332 1.1e-48 196.8 148 69.6
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 1.5e-48 196.4 148 66.9
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 1.5e-48 196.4 148 69.6
Sopen01g023960 Solanum pennellii HOM05D003564 ORTHO05D005332 1.5e-48 196.4 148 66.9
SHI00111 Sapria himalayana HOM05D003564 ORTHO05D005332 2.5e-48 195.7 148 64.2
Atru.chr5.3350 Acer truncatum HOM05D003564 ORTHO05D005332 3.3e-48 195.3 148 68.2
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 4.3e-48 194.9 148 66.2
PSO761G0547 Papaver somniferum HOM05D003564 ORTHO05D005332 4.3e-48 194.9 148 66.9
Rhsim02G0002600 Rhododendron simsii HOM05D003564 ORTHO05D005332 4.3e-48 194.9 148 68.2
Lsat_1_v5_gn_6_116000 Lactuca sativa HOM05D003564 ORTHO05D005332 5.6e-48 194.5 148 71.6
Phvul.010G104600 Phaseolus vulgaris HOM05D003564 ORTHO05D015539 1.6e-47 193.0 147 67.3
CSS0008122 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 8.2e-47 190.7 148 67.6
CAN.G281.5 Capsicum annuum HOM05D003564 ORTHO05D005332 8.2e-47 190.7 148 66.9
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 2.4e-46 189.1 148 66.2
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 4.0e-46 188.3 148 65.5
CSS0033456 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D015539 6.9e-46 187.6 148 66.2
DCAR_026993 Daucus carota HOM05D003564 ORTHO05D005332 2.0e-45 186.0 149 65.8
Atru.BG.89.p Acer truncatum HOM05D003564 ORTHO05D005332 2.6e-45 185.7 148 68.2
SEGI_35047 Sequoiadendron giganteum HOM05D003564 ORTHO05D005332 2.6e-45 185.7 148 66.2
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 5.8e-45 184.5 148 63.5
HPP92_001226 Vanilla planifolia HOM05D003564 ORTHO05D005332 1.0e-44 183.7 148 62.8
CDE01G0090 Ceratophyllum demersum HOM05D003564 ORTHO05D005332 2.2e-44 182.6 148 61.5
PSO673G0028 Papaver somniferum HOM05D003564 ORTHO05D015539 2.2e-44 182.6 146 63.7
Nitab4.5_0000647g0260 Nicotiana tabacum HOM05D003564 ORTHO05D005332 4.9e-44 181.4 179 57.0
Zm00001eb063430 Zea mays HOM05D003564 ORTHO05D005332 1.1e-43 180.3 148 64.2
Sabra08G0077700 Salix brachista HOM05D003564 ORTHO05D005332 3.2e-43 178.7 200 52.0
Os03g0832600 Oryza sativa ssp. japonica HOM05D003564 ORTHO05D005332 3.5e-42 175.3 148 61.5
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 1.5e-40 169.9 129 68.2
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 1.4e-38 163.3 148 55.4
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 1.5e-37 159.8 148 58.1
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 2.2e-36 156.0 148 55.4
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 3.2e-35 152.1 148 52.7
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 7.2e-35 151.0 148 52.0
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 5.7e-32 141.4 104 71.2
CAN.G311.69 Capsicum annuum HOM05D003564 ORTHO05D005332 2.2e-31 139.4 104 69.2
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.0e-29 132.9 147 49.7
Lsat_1_v5_gn_2_75340 Lactuca sativa HOM05D003564 ORTHO05D015539 4.5e-29 131.7 101 67.3
Lsat_1_v5_gn_1_7420 Lactuca sativa HOM05D003564 ORTHO05D001424 5.9e-29 131.3 101 66.3
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 3.8e-28 128.6 147 49.7
CBR_g24145 Chara braunii HOM05D003564 ORTHO05D005332 1.8e-25 119.8 155 45.2
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 1.5e-21 106.7 100 55.0
Sopen01g020110 Solanum pennellii HOM05D003564 ORTHO05D015539 1.9e-19 99.8 73 72.6
Thecc.02G173700 Theobroma cacao HOM05D003564 ORTHO05D005332 3.6e-18 95.5 65 78.5
TAR365G0167 Trochodendron aralioides HOM05D003564 ORTHO05D024794 4.7e-18 95.1 100 52.0
Lsat_1_v5_gn_5_163121 Lactuca sativa HOM05D003564 ORTHO05D230188 1.0e-17 94.0 93 53.8
Cre17.g732300 Chlamydomonas reinhardtii HOM05D003564 ORTHO05D005332 9.7e-16 87.4 147 36.7
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 5.3e-14 81.6 148 35.8
PRCOL_00002578 Prasinoderma coloniale HOM05D003564 ORTHO05D005332 7.0e-14 81.3 149 34.9
Actinidia14250 Actinidia chinensis HOM05D003564 ORTHO05D004310 1.0e-12 77.4 58 63.8
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.3e-12 77.0 54 66.7
Hma1.2p1_0213F.1_g090610 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.5e-11 73.6 59 62.7
Hma1.2p1_0760F.1_g214160 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 1.5e-11 73.6 59 62.7
Hma1.2p1_0014F.1_g009450 Hydrangea macrophylla HOM05D003564 ORTHO05D015539 4.2e-11 72.0 59 61.0
HanXRQChr14g0435401 Helianthus annuus HOM05D003564 ORTHO05D015539 1.4e-09 67.0 60 63.3
SGA_v2.0_scaffold21G09441 Striga asiatica HOM05D000207 ORTHO05D000606 4.4e-08 62.0 46 58.7
SGA_v2.0_scaffold18G08519 Striga asiatica HOM05D030373 ORTHO05D030073 8.2e-07 57.8 38 71.1


User provided reference genes

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