Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G337300 Glycine max HOM05D003402 ORTHO05D003939 5.8e-112 407.5 199 100.0
Glyma.18G072700 Glycine max HOM05D003402 ORTHO05D003939 3.0e-36 156.0 91 83.5
Glyma.18G072600 Glycine max HOM05D003402 ORTHO05D003939 8.8e-36 154.5 91 82.4
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 1.2e-35 154.1 91 82.4
arahy.Tifrunner.gnm1.ann1.YUWQ2H Arachis hypogaea HOM05D003402 ORTHO05D003939 5.7e-35 151.8 82 86.6
arahy.Tifrunner.gnm1.ann1.Z231WD Arachis hypogaea HOM05D003402 ORTHO05D003939 2.2e-34 149.8 113 69.0
Lj5g0012042 Lotus japonicus HOM05D003402 ORTHO05D003939 1.4e-33 147.1 91 76.9
VMungo0251G3320 Vigna mungo HOM05D003402 ORTHO05D003939 1.4e-33 147.1 82 86.6
VMungo0540G0608 Vigna mungo HOM05D003402 ORTHO05D003939 1.4e-33 147.1 82 85.4
Phvul.006G060100 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 2.4e-33 146.4 91 76.9
Phvul.002G190300 Phaseolus vulgaris HOM05D003402 ORTHO05D003939 3.1e-33 146.0 82 85.4
Manes.03G143100 Manihot esculenta HOM05D003402 ORTHO05D003939 4.1e-33 145.6 82 82.9
Lj6g0015324 Lotus japonicus HOM05D003402 ORTHO05D003939 5.4e-33 145.2 82 84.1
Ca_27956_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 7.0e-33 144.8 82 82.9
Ca_07475_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 9.1e-33 144.4 82 81.7
COL.COLO4_07759 Corchorus olitorius HOM05D003402 ORTHO05D003939 1.2e-32 144.1 81 81.5
Lalb_Chr15g0082451 Lupinus albus HOM05D003402 ORTHO05D003939 1.2e-32 144.1 82 80.5
Lalb_Chr20g0115311 Lupinus albus HOM05D003402 ORTHO05D003939 1.2e-32 144.1 82 81.7
QL08p001639 Quercus lobata HOM05D003402 ORTHO05D003939 1.2e-32 144.1 83 80.7
Sed0017285 Sechium edule HOM05D003402 ORTHO05D003939 1.2e-32 144.1 82 80.5
Ca_14849_v3 Cicer arietinum L. HOM05D003402 ORTHO05D003939 2.0e-32 143.3 82 81.7
MELO3C014081.2 Cucumis melo HOM05D003402 ORTHO05D003939 3.5e-32 142.5 82 80.5
Potri.001G469200 Populus trichocarpa HOM05D003402 ORTHO05D003939 3.5e-32 142.5 82 79.3
Potri.011G166000 Populus trichocarpa HOM05D003402 ORTHO05D003939 3.5e-32 142.5 82 81.7
Sed0010383 Sechium edule HOM05D003402 ORTHO05D003939 3.5e-32 142.5 82 79.3
ClCG10G004100 Citrullus lanatus HOM05D003402 ORTHO05D003939 4.5e-32 142.1 82 79.3
MBI10_g27408_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 4.5e-32 142.1 82 80.5
Sabra16G0318200 Salix brachista HOM05D003402 ORTHO05D003939 4.5e-32 142.1 82 80.5
ClCG01G000820 Citrullus lanatus HOM05D003402 ORTHO05D003939 5.9e-32 141.7 82 78.0
MELO3C005848.2 Cucumis melo HOM05D003402 ORTHO05D003939 5.9e-32 141.7 82 79.3
CsaV3_5G000960 Cucumis sativus L. HOM05D003402 ORTHO05D003939 5.9e-32 141.7 82 78.0
Duzib170G0574 Durio zibethinus HOM05D003402 ORTHO05D003939 5.9e-32 141.7 81 82.7
TPR.G17934 Trifolium pratense HOM05D003402 ORTHO05D003939 5.9e-32 141.7 82 79.3
Ciclev10029250m.g Citrus clementina HOM05D003402 ORTHO05D003939 7.7e-32 141.4 82 81.7
Duzib213G0004 Durio zibethinus HOM05D003402 ORTHO05D003939 7.7e-32 141.4 81 81.5
Sed0014715 Sechium edule HOM05D003402 ORTHO05D003939 7.7e-32 141.4 82 78.0
Cfa016938 Carpinus fangiana HOM05D003402 ORTHO05D003939 1.0e-31 141.0 82 81.7
CiPaw.14G096300 Carya illinoinensis HOM05D003402 ORTHO05D003939 1.0e-31 141.0 82 79.3
Haze_09893 Corylus avellana HOM05D003402 ORTHO05D003939 1.0e-31 141.0 82 81.7
Manes.05G206500 Manihot esculenta HOM05D003402 ORTHO05D003939 1.0e-31 141.0 82 79.3
Nn2g11712 Nelumbo nucifera HOM05D003402 ORTHO05D003939 1.0e-31 141.0 82 80.5
PSO675G7280 Papaver somniferum HOM05D003402 ORTHO05D003939 1.0e-31 141.0 82 78.0
Psat5g164680 Pisum sativum HOM05D003402 ORTHO05D003939 1.3e-31 140.6 82 79.3
CsaV3_3G003950 Cucumis sativus L. HOM05D003402 ORTHO05D003939 2.2e-31 139.8 82 79.3
Atru.chr1.1993 Acer truncatum HOM05D003402 ORTHO05D003939 2.9e-31 139.4 82 79.3
Cpa.g.sc19.128 Carica papaya HOM05D003402 ORTHO05D003939 2.9e-31 139.4 82 78.0
PGR083G2770 Punica granatum HOM05D003402 ORTHO05D003939 2.9e-31 139.4 82 76.8
Dinv41799 Davidia involucrata HOM05D003402 ORTHO05D003939 3.8e-31 139.0 82 78.0
MSTRG.3724 Avicennia marina HOM05D003402 ORTHO05D003939 5.0e-31 138.7 82 76.8
CiPaw.11G208600 Carya illinoinensis HOM05D003402 ORTHO05D003939 5.0e-31 138.7 82 79.3
Cc07_g13980 Coffea canephora HOM05D003402 ORTHO05D003939 6.5e-31 138.3 83 77.1
Gohir.A04G003200 Gossypium hirsutum HOM05D003402 ORTHO05D003939 6.5e-31 138.3 81 80.2
Gorai.009G453200 Gossypium raimondii HOM05D003402 ORTHO05D003939 6.5e-31 138.3 81 80.2
TWI73G0622 Tripterygium wilfordii HOM05D003402 ORTHO05D003939 6.5e-31 138.3 82 80.5
CANSAT01G1535 Cannabis sativa HOM05D003402 ORTHO05D003939 8.5e-31 137.9 82 76.8
Dinv40893 Davidia involucrata HOM05D000015 ORTHO05D002536 1.1e-30 137.5 82 78.0
Gohir.A13G130156 Gossypium hirsutum HOM05D003402 ORTHO05D003939 1.1e-30 137.5 81 77.8
Oeu017108.1 Olea europaea HOM05D003402 ORTHO05D003939 1.1e-30 137.5 82 76.8
TAR627G1074 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.1e-30 137.5 82 76.8
TAR629G1228 Trochodendron aralioides HOM05D003402 ORTHO05D003939 1.1e-30 137.5 82 78.0
Lj1P897T22 Lonicera japonica HOM05D003402 ORTHO05D003939 1.5e-30 137.1 82 78.0
FAN08G1169 Fragaria x ananassa HOM05D003402 ORTHO05D003939 1.9e-30 136.7 81 80.2
MD03G1039400 Malus domestica HOM05D003402 ORTHO05D003939 2.5e-30 136.3 81 79.0
PGR042G2666 Punica granatum HOM05D003402 ORTHO05D003939 2.5e-30 136.3 82 75.6
vmacro11627 Vaccinium macrocarpon HOM05D003402 ORTHO05D003939 2.5e-30 136.3 82 75.6
ATR0743G241 Amborella trichopoda HOM05D003402 ORTHO05D003939 3.2e-30 136.0 82 76.8
EL10Ac4g10262 Beta vulgaris HOM05D003402 ORTHO05D003939 3.2e-30 136.0 82 79.3
Duzib268G1061 Durio zibethinus HOM05D003402 ORTHO05D003939 3.2e-30 136.0 81 79.0
Gohir.D13G133300 Gossypium hirsutum HOM05D003402 ORTHO05D003939 3.2e-30 136.0 81 77.8
Gorai.013G149600 Gossypium raimondii HOM05D003402 ORTHO05D003939 3.2e-30 136.0 81 77.8
FAN03G3056 Fragaria x ananassa HOM05D003402 ORTHO05D003939 5.5e-30 135.2 81 79.0
FAN17G0134 Fragaria x ananassa HOM05D003402 ORTHO05D003939 5.5e-30 135.2 81 79.0
RcHm_v2.0_Chr7g0227141 Rosa chinensis HOM05D003402 ORTHO05D003939 5.5e-30 135.2 81 79.0
Thecc.07G005500 Theobroma cacao HOM05D003402 ORTHO05D003939 5.5e-30 135.2 79 82.3
unitig_748.g8474 Utricularia gibba HOM05D003402 ORTHO05D003939 5.5e-30 135.2 82 74.4
CANSAT01G1735 Cannabis sativa HOM05D003402 ORTHO05D003939 7.2e-30 134.8 82 75.6
DCAR_023786 Daucus carota HOM05D003402 ORTHO05D003939 9.5e-30 134.4 85 74.1
FvH4_5g31610 Fragaria vesca HOM05D003402 ORTHO05D003939 9.5e-30 134.4 81 79.0
FAN18G3876 Fragaria x ananassa HOM05D003402 ORTHO05D003939 9.5e-30 134.4 81 79.0
Nitab4.5_0006644g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 9.5e-30 134.4 82 76.8
EL10Ac4g10278 Beta vulgaris HOM05D003402 ORTHO05D003939 1.2e-29 134.0 82 78.0
CSS0009706 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 1.2e-29 134.0 82 75.6
Migut.K00808 Erythranthe guttata HOM05D003402 ORTHO05D003939 1.2e-29 134.0 82 73.2
MD11G1039900 Malus domestica HOM05D003402 ORTHO05D003939 1.2e-29 134.0 81 77.8
Medtr3g061130 Medicago truncatula HOM05D003402 ORTHO05D003939 1.2e-29 134.0 82 75.6
Hma1.2p1_0193F.1_g084090 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 1.6e-29 133.7 82 76.8
Hma1.2p1_2995F.1_g331420 Hydrangea macrophylla HOM05D003402 ORTHO05D003939 1.6e-29 133.7 82 76.8
DCAR_013538 Daucus carota HOM05D003402 ORTHO05D003939 2.1e-29 133.3 85 72.9
AUR62026671 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.8e-29 132.9 82 76.8
Rhsim09G0029600 Rhododendron simsii HOM05D003402 ORTHO05D003939 2.8e-29 132.9 82 74.4
EL10Ac1g01597 Beta vulgaris HOM05D003402 ORTHO05D003939 3.6e-29 132.5 82 76.8
Carub.0003s1264 Capsella rubella HOM05D003402 ORTHO05D003939 3.6e-29 132.5 82 74.4
AUR62035669 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.6e-29 132.5 82 76.8
Ciclev10032222m.g Citrus clementina HOM05D003402 ORTHO05D003939 3.6e-29 132.5 82 78.0
Migut.K00809 Erythranthe guttata HOM05D003402 ORTHO05D003939 3.6e-29 132.5 82 72.0
AL3G25080 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 4.7e-29 132.1 82 74.4
MSTRG.15682 Avicennia marina HOM05D003402 ORTHO05D003939 4.7e-29 132.1 82 72.0
unitig_0.g2650 Utricularia gibba HOM05D003402 ORTHO05D003939 4.7e-29 132.1 83 72.3
Prupe.6G031600 Prunus persica HOM05D003402 ORTHO05D003939 6.1e-29 131.7 81 74.1
Sc03g0011690 Simmondsia chinensis HOM05D003402 ORTHO05D003939 6.1e-29 131.7 82 75.6
HPP92_006270 Vanilla planifolia HOM05D003402 ORTHO05D003939 6.1e-29 131.7 82 72.0
Thhalv10021508m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 8.0e-29 131.3 83 72.3
Sopen06g034020 Solanum pennellii HOM05D003402 ORTHO05D003939 8.0e-29 131.3 82 74.4
PGSC0003DMG400030475 Solanum tuberosum HOM05D003402 ORTHO05D003939 8.0e-29 131.3 82 74.4
SGA_v2.0_scaffold45G17223 Striga asiatica HOM05D003402 ORTHO05D003939 8.0e-29 131.3 82 73.2
AT3G13230 Arabidopsis thaliana HOM05D003402 ORTHO05D003939 1.0e-28 131.0 82 74.4
Nn1g09837 Nelumbo nucifera HOM05D003402 ORTHO05D003939 1.0e-28 131.0 83 73.5
Aa31LG8G510 Aethionema arabicum HOM05D003402 ORTHO05D003939 1.4e-28 130.6 82 73.2
arahy.Tifrunner.gnm1.ann1.V7LA8U Arachis hypogaea HOM05D003402 ORTHO05D003939 1.4e-28 130.6 101 68.3
Nitab4.5_0012601g0010 Nicotiana tabacum HOM05D003402 ORTHO05D003939 1.4e-28 130.6 82 75.6
BcaB06g25476 Brassica carinata HOM05D003402 ORTHO05D003939 1.8e-28 130.2 82 73.2
A05p36350 Brassica napus HOM05D003402 ORTHO05D003939 2.3e-28 129.8 82 72.0
BraA05t22435Z Brassica rapa HOM05D003402 ORTHO05D003939 2.3e-28 129.8 82 72.0
CARHR087880 Cardamine hirsuta HOM05D003402 ORTHO05D003939 2.3e-28 129.8 82 73.2
Thhalv10014450m.g Eutrema salsugineum HOM05D003402 ORTHO05D003939 2.3e-28 129.8 82 72.0
HanXRQChr08g0232741 Helianthus annuus HOM05D003402 ORTHO05D003939 2.3e-28 129.8 82 72.0
Prupe.6G032300 Prunus persica HOM05D003402 ORTHO05D003939 2.3e-28 129.8 81 72.8
Sp1g41330 Schrenkiella parvula HOM05D003402 ORTHO05D003939 2.3e-28 129.8 82 72.0
BcaC05g29198 Brassica carinata HOM05D003402 ORTHO05D003939 3.0e-28 129.4 82 72.0
C05p54700 Brassica napus HOM05D003402 ORTHO05D003939 3.0e-28 129.4 82 72.0
BolC5t34140H Brassica oleracea HOM05D003402 ORTHO05D003939 3.0e-28 129.4 82 72.0
Os01g0788950 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 3.0e-28 129.4 82 74.4
Os03g0115200 Oryza sativa ssp. japonica HOM05D003402 ORTHO05D003939 3.0e-28 129.4 82 74.4
Sp3g11460 Schrenkiella parvula HOM05D003402 ORTHO05D003939 4.0e-28 129.0 83 71.1
Eucgr.K00301 Eucalyptus grandis HOM05D003402 ORTHO05D003939 5.2e-28 128.6 81 74.1
Aqoxy4G03102 Aquilegia oxysepala HOM05D003402 ORTHO05D003939 6.8e-28 128.3 82 70.7
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 6.8e-28 128.3 83 69.9
CAN.G874.67 Capsicum annuum HOM05D003402 ORTHO05D003939 8.8e-28 127.9 82 72.0
Lsat_1_v5_gn_5_681 Lactuca sativa HOM05D003402 ORTHO05D003939 8.8e-28 127.9 82 69.5
THA.LOC104822711 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 1.2e-27 127.5 82 70.7
AUR62040577 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.5e-27 127.1 82 72.0
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 2.6e-27 126.3 83 69.9
Gohir.D05G386500 Gossypium hirsutum HOM05D003402 ORTHO05D003939 2.6e-27 126.3 75 80.0
Zm00001eb151110 Zea mays HOM05D003402 ORTHO05D003939 4.4e-27 125.6 82 69.5
AUR62043266 Chenopodium quinoa HOM05D003402 ORTHO05D003939 5.7e-27 125.2 85 70.6
THA.LOC104801911 Tarenaya hassleriana HOM05D003402 ORTHO05D003939 5.7e-27 125.2 82 67.1
Zm00001eb369690 Zea mays HOM05D003402 ORTHO05D003939 7.5e-27 124.8 82 69.5
SEGI_07786 Sequoiadendron giganteum HOM05D003402 ORTHO05D003939 1.3e-26 124.0 93 63.4
BcaB02g10802 Brassica carinata HOM05D003402 ORTHO05D003939 1.8e-25 120.2 82 69.5
AUR62033193 Chenopodium quinoa HOM05D003402 ORTHO05D003939 3.1e-25 119.4 85 68.2
SHI18619 Sapria himalayana HOM05D003402 ORTHO05D003939 4.1e-25 119.0 82 68.3
CANSAT78G0394 Cannabis sativa HOM05D003402 ORTHO05D003939 9.2e-25 117.9 81 66.7
Pp3c2_270 Physcomitrium patens HOM05D003402 ORTHO05D003939 7.8e-24 114.8 82 63.4
SMO353G0217 Selaginella moellendorffii HOM05D003402 ORTHO05D003939 1.7e-23 113.6 86 61.6
AagrBONN_evm.TU.Sc2ySwM_344.2223 Anthoceros agrestis HOM05D003402 ORTHO05D003939 2.3e-23 113.2 82 63.4
AagrBONN_evm.TU.Sc2ySwM_344.5330 Anthoceros agrestis HOM05D003402 ORTHO05D003939 2.9e-23 112.8 82 62.2
Mapoly0008s0090 Marchantia polymorpha HOM05D003402 ORTHO05D003939 6.6e-23 111.7 83 61.4
Ah.01g016790 Amaranthus hybridus HOM05D003402 ORTHO05D003939 1.1e-22 110.9 82 61.0
CBR_g49013 Chara braunii HOM05D003402 ORTHO05D003939 5.6e-22 108.6 82 62.2
BcaB02g10801 Brassica carinata HOM05D003402 ORTHO05D003939 6.1e-21 105.1 71 70.4
Sed0019842 Sechium edule HOM05D003402 ORTHO05D003939 2.3e-20 103.2 83 63.9
SGA_v2.0_scaffold17G08096 Striga asiatica HOM05D003402 ORTHO05D003939 5.2e-20 102.1 83 57.8
SGA_v2.0_scaffold312G48272 Striga asiatica HOM05D003402 ORTHO05D003939 5.2e-20 102.1 83 57.8
C06p16210 Brassica napus HOM05D003402 ORTHO05D003939 1.5e-19 100.5 93 53.8
BolC6t36818H Brassica oleracea HOM05D003402 ORTHO05D003939 1.5e-19 100.5 93 53.8
BcaC08g44215 Brassica carinata HOM05D003402 ORTHO05D003939 2.0e-19 100.1 74 62.2
MBI16_g24676_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 2.6e-19 99.8 65 70.8
Ah.16g107980 Amaranthus hybridus HOM05D003402 ORTHO05D003939 3.7e-18 95.9 81 58.0
A05p17340 Brassica napus HOM05D003402 ORTHO05D003939 3.7e-18 95.9 79 58.2
Actinidia10580 Actinidia chinensis HOM05D003402 ORTHO05D003939 9.2e-17 91.3 62 67.7
ATR0686G089 Amborella trichopoda HOM05D003402 ORTHO05D003939 4.6e-16 89.0 58 72.4
BcaB06g25477 Brassica carinata HOM05D003402 ORTHO05D003939 5.9e-16 88.6 75 56.0
Sed0006897 Sechium edule HOM05D001876 ORTHO05D002002 5.9e-16 88.6 67 64.2
EL10Ac4g07749 Beta vulgaris HOM05D003402 ORTHO05D003939 1.0e-15 87.8 88 53.4
Hund02372 Selenicereus undatus HOM05D003402 ORTHO05D003939 1.3e-15 87.4 86 54.7
CDE10G1248 Ceratophyllum demersum HOM05D003402 ORTHO05D003939 2.3e-15 86.7 56 69.6
MCO11G345 Micromonas commoda HOM05D003402 ORTHO05D003939 3.0e-15 86.3 133 42.9
Cre12.g549700 Chlamydomonas reinhardtii HOM05D003402 ORTHO05D003939 1.1e-14 84.3 85 49.4
AUR62017904 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.9e-14 83.6 77 57.1
AUR62043565 Chenopodium quinoa HOM05D003402 ORTHO05D003939 2.5e-14 83.2 76 57.9
Hund02357 Selenicereus undatus HOM05D003402 ORTHO05D003939 4.3e-14 82.4 86 53.5
Sc07g0001980 Simmondsia chinensis HOM05D003402 ORTHO05D003939 6.2e-13 78.6 62 54.8
MBI10_g27411_MAGBIO Magnolia biondii HOM05D003402 ORTHO05D003939 8.0e-13 78.2 78 52.6
PRCOL_00004610 Prasinoderma coloniale HOM05D003402 ORTHO05D003939 1.8e-12 77.0 93 45.2
AUR62017905 Chenopodium quinoa HOM05D003402 ORTHO05D003939 1.2e-11 74.3 98 45.9
Cpa.g.sc106.81 Carica papaya HOM05D003402 ORTHO05D003939 2.0e-11 73.6 75 50.7
Peaxi162Scf00359g10124 Petunia axillaris HOM05D003402 ORTHO05D003939 2.0e-11 73.6 36 88.9
Zm00001eb138570 Zea mays HOM05D003402 ORTHO05D003939 7.5e-11 71.6 56 57.1
AL1G63860 Arabidopsis lyrata HOM05D003402 ORTHO05D003939 1.0e-07 61.2 42 66.7
Haze_26506 Corylus avellana HOM05D003402 ORTHO05D003939 2.3e-07 60.1 81 35.8
CSS0032042 Camellia sinensis var. sinensis HOM05D003402 ORTHO05D003939 1.5e-06 57.4 44 63.6
Ah.01g016810 Amaranthus hybridus HOM05D003402 ORTHO05D003939 9.5e-06 54.7 35 71.4


User provided reference genes

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