Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G315600 Glycine max HOM05D006328 ORTHO05D007721 2.8e-143 511.9 259 100.0
Glyma.18G097300 Glycine max HOM05D006328 ORTHO05D007721 7.2e-131 470.7 262 94.3
Phvul.006G042800 Phaseolus vulgaris HOM05D006328 ORTHO05D007721 4.1e-110 401.7 264 83.0
Lalb_Chr10g0091951 Lupinus albus HOM05D006328 ORTHO05D007721 6.4e-95 351.3 252 71.8
arahy.Tifrunner.gnm1.ann1.6HD85A Arachis hypogaea HOM05D006328 ORTHO05D007721 1.3e-92 343.6 263 70.3
Lj6g0000665 Lotus japonicus HOM05D006328 ORTHO05D007721 5.3e-89 331.6 261 69.0
Ciclev10016391m.g Citrus clementina HOM05D006328 ORTHO05D007721 1.2e-88 330.5 243 70.4
TPR.G19330 Trifolium pratense HOM05D006328 ORTHO05D007721 1.5e-88 330.1 241 71.0
CANSAT11G2432 Cannabis sativa HOM05D006328 ORTHO05D007721 3.4e-88 328.9 262 66.8
ClCG03G013990 Citrullus lanatus HOM05D006328 ORTHO05D007721 7.6e-88 327.8 237 71.7
EL10Ac4g10350 Beta vulgaris HOM05D006328 ORTHO05D007721 2.2e-87 326.2 249 67.1
MELO3C015648.2 Cucumis melo HOM05D006328 ORTHO05D007721 2.2e-87 326.2 237 71.3
ClCG08G005770 Citrullus lanatus HOM05D006328 ORTHO05D007721 2.9e-87 325.9 234 70.9
CsaV3_1G042230 Cucumis sativus L. HOM05D006328 ORTHO05D007721 6.4e-87 324.7 237 71.3
CiPaw.13G173100 Carya illinoinensis HOM05D006328 ORTHO05D007721 8.4e-87 324.3 253 67.6
Manes.03G088400 Manihot esculenta HOM05D006328 ORTHO05D007721 8.4e-87 324.3 234 73.1
Prupe.1G537200 Prunus persica HOM05D006328 ORTHO05D007721 1.1e-86 323.9 261 67.0
Cpa.g.sc119.81 Carica papaya HOM05D006328 ORTHO05D007721 1.4e-86 323.6 257 66.1
Atru.chr3.2259 Acer truncatum HOM05D006328 ORTHO05D007721 1.9e-86 323.2 243 68.7
Atru.chr3.2265 Acer truncatum HOM05D006328 ORTHO05D007721 1.9e-86 323.2 243 68.7
Eucgr.B03625 Eucalyptus grandis HOM05D006328 ORTHO05D007721 2.4e-86 322.8 245 69.4
FAN16G1952 Fragaria x ananassa HOM05D006328 ORTHO05D007721 3.2e-86 322.4 268 65.3
Sed0015335 Sechium edule HOM05D006328 ORTHO05D007721 4.2e-86 322.0 237 70.5
Thecc.09G213100 Theobroma cacao HOM05D006328 ORTHO05D007721 7.1e-86 321.2 260 66.5
AUR62019196 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.1e-85 319.7 260 66.2
Hma1.2p1_0062F.1_g034170 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 2.7e-85 319.3 192 81.8
RcHm_v2.0_Chr5g0081531 Rosa chinensis HOM05D006328 ORTHO05D007721 2.7e-85 319.3 266 66.2
FvH4_3g44830 Fragaria vesca HOM05D006328 ORTHO05D007721 4.6e-85 318.5 266 65.8
BraA09t36060Z Brassica rapa HOM05D006328 ORTHO05D007721 6.0e-85 318.2 259 64.5
GSVIVG01025405001 Vitis vinifera HOM05D006328 ORTHO05D007721 7.8e-85 317.8 241 71.0
Potri.003G216700 Populus trichocarpa HOM05D006328 ORTHO05D007721 1.0e-84 317.4 262 64.9
FAN11G1794 Fragaria x ananassa HOM05D006328 ORTHO05D007721 1.3e-84 317.0 266 65.4
Medtr3g083310 Medicago truncatula HOM05D006328 ORTHO05D007721 1.3e-84 317.0 262 65.6
BcaC04g23807 Brassica carinata HOM05D006328 ORTHO05D007721 2.3e-84 316.2 259 64.5
C09p04470 Brassica napus HOM05D006328 ORTHO05D007721 2.3e-84 316.2 259 64.5
BolC9t53377H Brassica oleracea HOM05D006328 ORTHO05D007721 2.3e-84 316.2 259 64.5
FAN21G0799 Fragaria x ananassa HOM05D006328 ORTHO05D007721 2.3e-84 316.2 274 64.6
PGR102G1639 Punica granatum HOM05D006328 ORTHO05D007721 2.3e-84 316.2 243 68.7
COL.COLO4_34990 Corchorus olitorius HOM05D001240 ORTHO05D002450 3.0e-84 315.8 192 81.2
Dinv13426 Davidia involucrata HOM05D006328 ORTHO05D007721 5.1e-84 315.1 237 72.2
FAN25G2838 Fragaria x ananassa HOM05D006328 ORTHO05D007721 6.6e-84 314.7 266 64.7
Gohir.D13G217500 Gossypium hirsutum HOM05D006328 ORTHO05D007721 8.7e-84 314.3 248 68.1
C07p38710 Brassica napus HOM05D006328 ORTHO05D007721 1.1e-83 313.9 263 64.6
Gorai.013G248000 Gossypium raimondii HOM05D006328 ORTHO05D007721 1.1e-83 313.9 248 68.1
THA.LOC104811061 Tarenaya hassleriana HOM05D006328 ORTHO05D007721 1.1e-83 313.9 202 75.2
QL01p007982 Quercus lobata HOM05D006328 ORTHO05D007721 1.5e-83 313.5 245 68.6
AL5G20530 Arabidopsis lyrata HOM05D006328 ORTHO05D007721 2.5e-83 312.8 265 63.4
Gohir.A13G213700 Gossypium hirsutum HOM05D006328 ORTHO05D007721 2.5e-83 312.8 248 67.7
Lsat_1_v5_gn_2_101560 Lactuca sativa HOM05D006328 ORTHO05D007721 2.5e-83 312.8 246 66.7
MD08G1205200 Malus domestica HOM05D006328 ORTHO05D007721 2.5e-83 312.8 265 66.0
Solyc01g006020.4 Solanum lycopersicum HOM05D006328 ORTHO05D007721 3.3e-83 312.4 258 66.3
A09p04230 Brassica napus HOM05D006328 ORTHO05D007721 4.3e-83 312.0 259 64.1
ECA238G4721 Erigeron canadensis HOM05D006328 ORTHO05D007721 4.3e-83 312.0 248 66.1
TWI60G0846 Tripterygium wilfordii HOM05D006328 ORTHO05D007721 5.6e-83 311.6 231 70.1
CARHR153570 Cardamine hirsuta HOM05D006328 ORTHO05D007721 7.3e-83 311.2 263 62.7
Sp2g18300 Schrenkiella parvula HOM05D006328 ORTHO05D007721 7.3e-83 311.2 263 64.3
A06p39560 Brassica napus HOM05D006328 ORTHO05D007721 1.3e-82 310.5 261 64.0
BraA06t26871Z Brassica rapa HOM05D006328 ORTHO05D007721 1.3e-82 310.5 261 64.0
TAR633G0950 Trochodendron aralioides HOM05D006328 ORTHO05D007721 1.6e-82 310.1 265 63.8
TAR633G1956 Trochodendron aralioides HOM05D006328 ORTHO05D007721 1.6e-82 310.1 265 63.8
BcaB04g19533 Brassica carinata HOM05D006328 ORTHO05D007721 2.1e-82 309.7 260 65.4
Actinidia16265 Actinidia chinensis HOM05D006328 ORTHO05D007721 2.8e-82 309.3 244 68.4
Nn7g35935 Nelumbo nucifera HOM05D006328 ORTHO05D007721 4.8e-82 308.5 244 66.4
Carub.0003s3500 Capsella rubella HOM05D006328 ORTHO05D007721 1.1e-81 307.4 240 66.2
Nitab4.5_0000775g0140 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.1e-81 307.4 258 64.3
AT3G32930 Arabidopsis thaliana HOM05D006328 ORTHO05D007721 1.8e-81 306.6 263 62.0
Nitab4.5_0011368g0030 Nicotiana tabacum HOM05D006328 ORTHO05D007721 1.8e-81 306.6 258 65.1
Peaxi162Scf00100g00716 Petunia axillaris HOM05D006328 ORTHO05D007721 1.8e-81 306.6 232 71.1
Sopen01g002030 Solanum pennellii HOM05D006328 ORTHO05D007721 2.4e-81 306.2 258 65.1
HanXRQChr07g0196761 Helianthus annuus HOM05D006328 ORTHO05D007721 4.0e-81 305.4 244 67.6
Thhalv10004835m.g Eutrema salsugineum HOM05D006328 ORTHO05D007721 5.3e-81 305.1 262 63.7
PGSC0003DMG400032183 Solanum tuberosum HOM05D006328 ORTHO05D007721 5.3e-81 305.1 258 65.1
Sabra03G0161800 Salix brachista HOM05D006328 ORTHO05D007721 6.9e-81 304.7 286 60.1
Oeu029372.1 Olea europaea HOM05D006328 ORTHO05D007721 1.2e-80 303.9 193 76.7
Hund07572 Selenicereus undatus HOM05D006328 ORTHO05D007721 2.0e-80 303.1 254 64.6
Aa31LG4G12590 Aethionema arabicum HOM05D006328 ORTHO05D007721 2.6e-80 302.8 197 75.1
CSS0031266 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.4e-80 302.4 244 66.0
SalBow6G6014 Salvia bowleyana HOM05D006328 ORTHO05D007721 7.6e-80 301.2 245 68.2
Lj1A460T3 Lonicera japonica HOM05D006328 ORTHO05D007721 9.9e-80 300.8 252 65.1
MSTRG.18860 Avicennia marina HOM05D006328 ORTHO05D007721 1.7e-79 300.1 195 77.4
Haze_22985 Corylus avellana HOM05D006328 ORTHO05D007721 3.8e-79 298.9 305 56.4
Cc01_g01550 Coffea canephora HOM05D006328 ORTHO05D007721 1.1e-78 297.4 258 62.4
Migut.D02532 Erythranthe guttata HOM05D006328 ORTHO05D007721 1.4e-78 297.0 238 67.6
CAN.G158.4 Capsicum annuum HOM05D006328 ORTHO05D007721 1.9e-78 296.6 258 62.4
MBI13_g29633_MAGBIO Magnolia biondii HOM05D006328 ORTHO05D007721 5.4e-78 295.0 232 65.9
SGA_v2.0_scaffold6G03437 Striga asiatica HOM05D006328 ORTHO05D007721 5.4e-78 295.0 210 73.3
unitig_746.g26630 Utricularia gibba HOM05D006328 ORTHO05D007721 7.9e-77 291.2 196 76.0
ATR0598G038 Amborella trichopoda HOM05D006328 ORTHO05D007721 3.3e-75 285.8 264 60.6
PSO339G5084 Papaver somniferum HOM05D006328 ORTHO05D007721 5.6e-75 285.0 239 62.8
AUR62000025 Chenopodium quinoa HOM05D006328 ORTHO05D007721 2.8e-74 282.7 177 78.5
DCAR_001992 Daucus carota HOM05D006328 ORTHO05D007721 3.7e-74 282.3 251 61.0
Actinidia06854 Actinidia chinensis HOM05D001240 ORTHO05D002450 1.8e-73 280.0 214 70.1
Manes.15G105600 Manihot esculenta HOM05D006328 ORTHO05D007721 1.8e-73 280.0 263 60.1
PSO384G1580 Papaver somniferum HOM05D006328 ORTHO05D007721 3.1e-73 279.3 239 61.5
Duzib150G1371 Durio zibethinus HOM05D006328 ORTHO05D007721 3.4e-72 275.8 238 61.8
HPP92_009650 Vanilla planifolia HOM05D006328 ORTHO05D007721 4.5e-72 275.4 194 68.6
CDE06G2606 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 5.8e-72 275.0 194 70.6
Ah.06g193050 Amaranthus hybridus HOM05D001193 ORTHO05D007721 7.6e-72 274.6 258 57.8
Aqoxy1G00065 Aquilegia oxysepala HOM05D006328 ORTHO05D007721 1.4e-70 270.4 260 58.5
Rhsim13G0229700 Rhododendron simsii HOM05D006328 ORTHO05D007721 4.6e-69 265.4 228 61.0
Hma1.2p1_0062F.1_g034180 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 6.2e-66 255.0 137 88.3
Os07g0608100 Oryza sativa ssp. japonica HOM05D006328 ORTHO05D007721 4.0e-65 252.3 197 67.0
Zm00001eb108920 Zea mays HOM05D006328 ORTHO05D007721 1.7e-63 246.9 261 53.3
Psat5g101200 Pisum sativum HOM05D006328 ORTHO05D007721 6.5e-63 245.0 219 63.0
VMungo0540G0449 Vigna mungo HOM05D006328 ORTHO05D007721 8.4e-63 244.6 122 96.7
vmacro04215 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 1.1e-62 244.2 190 66.8
AagrBONN_evm.TU.Sc2ySwM_344.1649 Anthoceros agrestis HOM05D006328 ORTHO05D007721 2.0e-48 196.8 203 51.7
Mapoly0048s0070 Marchantia polymorpha HOM05D006328 ORTHO05D007721 1.6e-45 187.2 195 50.3
Sc06g0004300 Simmondsia chinensis HOM05D006328 ORTHO05D007721 7.9e-45 184.9 197 56.3
vmacro22566 Vaccinium macrocarpon HOM05D006328 ORTHO05D007721 5.1e-44 182.2 105 82.9
VMungo0540G1370 Vigna mungo HOM05D006328 ORTHO05D007721 2.0e-43 180.3 150 69.3
Pp3c11_23310 Physcomitrium patens HOM05D006328 ORTHO05D007721 7.4e-43 178.3 204 49.0
CDE07G1106 Ceratophyllum demersum HOM05D006328 ORTHO05D007721 3.9e-36 156.0 184 48.4
CBR_g50072 Chara braunii HOM05D006328 ORTHO05D007721 3.9e-36 156.0 122 59.8
Duzib168G1709 Durio zibethinus HOM05D006328 ORTHO05D007721 8.5e-31 138.3 185 45.4
CSS0049555 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 3.2e-30 136.3 104 68.3
Nn2g15765 Nelumbo nucifera HOM05D006328 ORTHO05D007721 2.7e-29 133.3 72 81.9
CSS0028438 Camellia sinensis var. sinensis HOM05D006328 ORTHO05D007721 1.0e-28 131.3 100 69.0
HanXRQChr04g0113321 Helianthus annuus HOM05D006328 ORTHO05D007721 1.3e-23 114.4 61 82.0
arahy.Tifrunner.gnm1.ann1.VB18ZC Arachis hypogaea HOM05D006328 ORTHO05D007721 9.4e-22 108.2 135 51.1
arahy.Tifrunner.gnm1.ann1.C5G03I Arachis hypogaea HOM05D006328 ORTHO05D007721 3.1e-17 93.2 67 70.1
HanXRQChr17g0560491 Helianthus annuus HOM05D006328 ORTHO05D007721 3.1e-17 93.2 53 84.9
Nn2g15764 Nelumbo nucifera HOM05D006328 ORTHO05D007721 5.4e-17 92.4 90 60.0
Dinv15017 Davidia involucrata HOM05D006328 ORTHO05D007721 5.9e-16 89.0 113 51.3
unitig_899.g15354 Utricularia gibba HOM05D006328 ORTHO05D007721 3.3e-14 83.2 49 71.4
Hma1.2p1_0062F.1_g034160 Hydrangea macrophylla HOM05D006328 ORTHO05D007721 1.2e-13 81.3 99 51.5
Sabra06G0010000 Salix brachista HOM05D006328 ORTHO05D007721 1.2e-13 81.3 108 50.0
Zm00001eb327220 Zea mays HOM05D006328 ORTHO05D007721 2.4e-09 67.0 66 57.6
Dinv08842 Davidia involucrata HOM05D006328 ORTHO05D007721 2.0e-08 63.9 61 57.4
arahy.Tifrunner.gnm1.ann1.RQ0K0U Arachis hypogaea HOM05D002734 ORTHO05D003035 2.5e-06 57.0 35 74.3


User provided reference genes

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