Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G287800 Glycine max HOM05D001292 ORTHO05D001202 4.5e-209 731.1 389 100.0
Glyma.18G137700 Glycine max HOM05D001292 ORTHO05D001202 3.6e-174 615.1 385 86.5
VMungo0251G2116 Vigna mungo HOM05D001292 ORTHO05D001202 4.9e-131 471.9 396 66.7
Phvul.003G052200 Phaseolus vulgaris HOM05D001292 ORTHO05D001202 1.3e-128 463.8 388 68.3
Lj4g0026951 Lotus japonicus HOM05D001292 ORTHO05D001202 1.8e-85 320.5 381 54.6
Psat4g125280 Pisum sativum HOM05D001292 ORTHO05D001202 2.4e-85 320.1 381 50.7
Ca_22729_v3 Cicer arietinum L. HOM05D001292 ORTHO05D001202 3.1e-85 319.7 386 53.1
Medtr8g064470 Medicago truncatula HOM05D001292 ORTHO05D001202 2.0e-84 317.0 378 55.3
TPR.G32100 Trifolium pratense HOM05D001292 ORTHO05D001202 1.6e-81 307.4 382 52.6
Lalb_Chr09g0335011 Lupinus albus HOM05D001292 ORTHO05D001202 2.2e-78 297.0 381 50.9
arahy.Tifrunner.gnm1.ann1.UYF69H Arachis hypogaea HOM05D001292 ORTHO05D001202 8.2e-70 268.5 385 47.3
arahy.Tifrunner.gnm1.ann1.XAFC77 Arachis hypogaea HOM05D001292 ORTHO05D001202 1.7e-59 234.2 383 42.0
CiPaw.05G150600 Carya illinoinensis HOM05D001292 ORTHO05D001202 2.2e-59 233.8 385 41.3
Haze_12172 Corylus avellana HOM05D001292 ORTHO05D001202 4.4e-55 219.5 385 40.0
QL03p061415 Quercus lobata HOM05D001292 ORTHO05D001202 4.4e-55 219.5 407 41.5
Cfa009140 Carpinus fangiana HOM05D001292 ORTHO05D001202 2.2e-54 217.2 353 42.5
Thecc.02G248100 Theobroma cacao HOM05D001292 ORTHO05D001202 1.0e-51 208.4 394 39.8
TWI18G1467 Tripterygium wilfordii HOM05D001292 ORTHO05D001202 6.5e-51 205.7 396 39.4
Atru.chr11.2015 Acer truncatum HOM05D001292 ORTHO05D001202 1.4e-45 188.0 390 37.9
TAR374G1183 Trochodendron aralioides HOM05D001292 ORTHO05D001202 1.8e-45 187.6 376 36.7
Duzib248G1000 Durio zibethinus HOM05D001292 ORTHO05D001202 4.1e-45 186.4 395 37.2
Gorai.012G171400 Gossypium raimondii HOM05D001292 ORTHO05D001202 7.0e-45 185.7 332 41.6
Gohir.D04G178300 Gossypium hirsutum HOM05D001292 ORTHO05D001202 1.2e-44 184.9 332 41.6
Dinv15305 Davidia involucrata HOM05D001292 ORTHO05D001202 5.9e-44 182.6 426 35.2
Eucgr.H02612 Eucalyptus grandis HOM05D001292 ORTHO05D001202 3.8e-43 179.9 339 40.1
Ciclev10031081m.g Citrus clementina HOM05D001292 ORTHO05D001202 4.2e-42 176.4 393 37.9
Gohir.A04G135200 Gossypium hirsutum HOM05D001292 ORTHO05D001202 4.2e-42 176.4 387 37.2
PGR119G2170 Punica granatum HOM05D001292 ORTHO05D001202 1.2e-41 174.9 388 35.3
Potri.010G040600 Populus trichocarpa HOM05D001292 ORTHO05D001202 6.1e-41 172.6 342 34.5
Sed0021630 Sechium edule HOM05D001292 ORTHO05D001202 1.4e-40 171.4 390 35.9
RcHm_v2.0_Chr4g0443941 Rosa chinensis HOM05D001292 ORTHO05D001202 1.7e-38 164.5 336 35.7
Nn4g22805 Nelumbo nucifera HOM05D001292 ORTHO05D001202 3.7e-38 163.3 371 34.5
Rhsim12G0121000 Rhododendron simsii HOM05D001292 ORTHO05D001202 6.3e-38 162.5 394 33.5
Actinidia13513 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.4e-37 161.4 344 34.6
CSS0024382 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 2.0e-36 157.5 336 36.6
ClCG05G025290 Citrullus lanatus HOM05D001292 ORTHO05D001202 1.0e-35 155.2 408 32.4
MBI16_g36056_MAGBIO Magnolia biondii HOM05D001292 ORTHO05D001202 1.9e-34 151.0 387 33.3
Manes.13G030900 Manihot esculenta HOM05D001292 ORTHO05D001202 4.3e-34 149.8 208 44.2
FAN17G1642 Fragaria x ananassa HOM05D001292 ORTHO05D001202 9.5e-34 148.7 357 32.8
CsaV3_5G031600 Cucumis sativus L. HOM05D001292 ORTHO05D001202 1.2e-33 148.3 379 35.1
FAN07G2035 Fragaria x ananassa HOM05D001292 ORTHO05D001202 8.0e-33 145.6 391 30.4
FvH4_4g34560 Fragaria vesca HOM05D001292 ORTHO05D001202 1.0e-32 145.2 395 31.1
CAN.G376.11 Capsicum annuum HOM05D001292 ORTHO05D001202 1.8e-32 144.4 363 32.5
vmacro16254 Vaccinium macrocarpon HOM05D001292 ORTHO05D001202 3.0e-32 143.7 411 32.6
CANSAT01G2663 Cannabis sativa HOM05D001292 ORTHO05D001202 4.0e-32 143.3 390 30.3
Sopen05g001630 Solanum pennellii HOM05D001292 ORTHO05D001202 1.5e-31 141.4 368 32.9
Nitab4.5_0000113g0260 Nicotiana tabacum HOM05D001292 ORTHO05D001202 9.8e-31 138.7 376 30.3
Nitab4.5_0002579g0090 Nicotiana tabacum HOM05D001292 ORTHO05D001202 1.3e-30 138.3 388 31.4
AUR62005372 Chenopodium quinoa HOM05D001292 ORTHO05D001202 8.3e-30 135.6 351 33.0
Manes.12G029500 Manihot esculenta HOM05D001292 ORTHO05D001202 1.8e-29 134.4 197 46.7
Sc11g0001210 Simmondsia chinensis HOM05D001292 ORTHO05D001202 1.8e-29 134.4 340 33.8
Hund25343 Selenicereus undatus HOM05D001292 ORTHO05D001202 1.2e-28 131.7 356 31.2
Sabra10G0026500 Salix brachista HOM05D001292 ORTHO05D001202 3.5e-28 130.2 315 32.7
GSVIVG01020234001 Vitis vinifera HOM05D001292 ORTHO05D001202 5.0e-27 126.3 259 37.8
Actinidia15043 Actinidia chinensis HOM05D001292 ORTHO05D001202 1.1e-26 125.2 362 31.8
MSTRG.7894 Avicennia marina HOM05D001292 ORTHO05D001202 1.1e-26 125.2 335 33.7
Peaxi162Scf00338g00116 Petunia axillaris HOM05D001292 ORTHO05D001202 1.9e-26 124.4 254 35.0
MSTRG.597 Avicennia marina HOM05D001292 ORTHO05D001202 1.2e-25 121.7 326 33.1
Dinv24863 Davidia involucrata HOM05D001292 ORTHO05D001202 4.7e-25 119.8 98 61.2
THA.LOC104823662 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 1.4e-24 118.2 352 31.5
Psat3g198040 Pisum sativum HOM05D003662 ORTHO05D001202 1.8e-24 117.9 110 58.2
ATR0730G146 Amborella trichopoda HOM05D001292 ORTHO05D001202 3.1e-24 117.1 384 31.0
CDE04G1081 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 2.6e-23 114.0 370 27.8
CDE06G2008 Ceratophyllum demersum HOM05D001292 ORTHO05D001202 2.9e-22 110.5 370 27.8
Sp2g04460 Schrenkiella parvula HOM05D001292 ORTHO05D001202 2.9e-22 110.5 355 28.7
SpUn0106_0010 Schrenkiella parvula HOM05D001292 ORTHO05D001202 2.9e-22 110.5 355 28.7
PSO832G2131 Papaver somniferum HOM05D001292 ORTHO05D001202 9.2e-21 105.5 393 27.0
Nitab4.5_0004636g0020 Nicotiana tabacum HOM05D001292 ORTHO05D001202 1.2e-20 105.1 244 32.4
FAN12G1507 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.6e-20 104.8 361 28.0
Thhalv10023376m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 2.0e-20 104.4 359 30.9
Aqoxy3G02988 Aquilegia oxysepala HOM05D001292 ORTHO05D001202 3.5e-20 103.6 397 28.7
MELO3C012000.2 Cucumis melo HOM05D001292 ORTHO05D001202 1.0e-19 102.1 348 30.5
Migut.L01409 Erythranthe guttata HOM05D001292 ORTHO05D001202 1.3e-19 101.7 395 30.1
FAN22G1387 Fragaria x ananassa HOM05D001292 ORTHO05D001202 1.3e-19 101.7 337 28.5
PSO063G4088 Papaver somniferum HOM05D001292 ORTHO05D001202 2.3e-19 100.9 402 25.6
SGA_v2.0_scaffold165G38250 Striga asiatica HOM05D001292 ORTHO05D001202 2.3e-19 100.9 348 29.0
Ah.02g129890 Amaranthus hybridus HOM05D001292 ORTHO05D001202 3.9e-19 100.1 349 28.7
EL10Ac6g13669 Beta vulgaris HOM05D001292 ORTHO05D001202 3.9e-19 100.1 254 30.7
Carub.0002s0503 Capsella rubella HOM05D001292 ORTHO05D001202 1.5e-18 98.2 400 29.2
ECA233G2320 Erigeron canadensis HOM05D001292 ORTHO05D001202 2.5e-18 97.4 373 27.6
HanXRQChr12g0368581 Helianthus annuus HOM05D001292 ORTHO05D001202 2.5e-18 97.4 346 28.9
Cc11_g14630 Coffea canephora HOM05D001292 ORTHO05D001202 4.3e-18 96.7 80 60.0
Psat2g065560 Pisum sativum HOM05D000236 ORTHO05D000192 7.3e-18 95.9 127 44.9
Lsat_1_v5_gn_3_48100 Lactuca sativa HOM05D001292 ORTHO05D001202 9.5e-18 95.5 324 29.9
unitig_26.g10341 Utricularia gibba HOM05D001292 ORTHO05D001202 9.5e-18 95.5 76 60.5
SEGI_12549 Sequoiadendron giganteum HOM05D001292 ORTHO05D001202 2.1e-17 94.4 75 56.0
Solyc04g026200.3 Solanum lycopersicum HOM05D001292 ORTHO05D001202 2.8e-17 94.0 80 60.0
Nitab4.5_0000034g0270 Nicotiana tabacum HOM05D001292 ORTHO05D001202 3.6e-17 93.6 69 66.7
AT1G60220 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 4.7e-17 93.2 415 28.7
Aa31LG2G10100 Aethionema arabicum HOM05D001292 ORTHO05D001202 6.2e-17 92.8 370 28.1
C09p21960 Brassica napus HOM05D001292 ORTHO05D001202 6.2e-17 92.8 342 29.2
Oeu056395.2 Olea europaea HOM05D001292 ORTHO05D001202 6.2e-17 92.8 343 29.7
Sopen04g014190 Solanum pennellii HOM05D001292 ORTHO05D001202 6.2e-17 92.8 80 58.8
CARHR010730 Cardamine hirsuta HOM05D001292 ORTHO05D001202 8.1e-17 92.4 389 26.7
ECA246G0922 Erigeron canadensis HOM05D001292 ORTHO05D001202 1.1e-16 92.0 77 55.8
BcaB07g31205 Brassica carinata HOM05D001292 ORTHO05D001202 1.8e-16 91.3 361 30.7
CAN.G60.9 Capsicum annuum HOM05D001292 ORTHO05D001202 1.8e-16 91.3 374 29.4
Psat0s1668g0040 Pisum sativum HOM05D001292 ORTHO05D014892 1.8e-16 91.3 97 53.6
Sopen04g014280 Solanum pennellii HOM05D001292 ORTHO05D001202 1.8e-16 91.3 83 56.6
HanXRQChr15g0490121 Helianthus annuus HOM05D001292 ORTHO05D001202 2.3e-16 90.9 325 29.2
RcHm_v2.0_Chr3g0455541 Rosa chinensis HOM05D001292 ORTHO05D001202 2.3e-16 90.9 90 51.1
DCAR_007092 Daucus carota HOM05D001292 ORTHO05D001202 5.2e-16 89.7 225 37.3
HPP92_008297 Vanilla planifolia HOM05D001292 ORTHO05D001202 5.2e-16 89.7 75 56.0
HPP92_020276 Vanilla planifolia HOM05D001292 ORTHO05D001202 5.2e-16 89.7 76 55.3
AL2G16440 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 1.2e-15 88.6 417 26.9
BcaC04g22220 Brassica carinata HOM05D001292 ORTHO05D001202 1.2e-15 88.6 344 28.2
BraA06t23937Z Brassica rapa HOM05D001292 ORTHO05D001202 7.5e-15 85.9 92 46.7
Cpa.g.sc69.25 Carica papaya HOM05D001292 ORTHO05D001202 7.5e-15 85.9 52 78.8
MD13G1091500 Malus domestica HOM05D001292 ORTHO05D001202 1.3e-14 85.1 297 28.6
BolC9t55101H Brassica oleracea HOM05D001292 ORTHO05D001202 2.9e-14 84.0 344 27.9
SEGI_02443 Sequoiadendron giganteum HOM05D001292 ORTHO05D001202 6.4e-14 82.8 69 55.1
BcaC05g24936 Brassica carinata HOM05D001292 ORTHO05D001202 1.9e-13 81.3 395 26.1
A09p17630 Brassica napus HOM05D001292 ORTHO05D001202 1.9e-13 81.3 406 26.6
Thhalv10007260m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 2.4e-13 80.9 75 49.3
CSS0049204 Camellia sinensis var. sinensis HOM05D001292 ORTHO05D001202 4.1e-13 80.1 292 30.8
Prupe.1G254600 Prunus persica HOM05D001292 ORTHO05D001202 4.1e-13 80.1 396 27.8
AL1G21390 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 9.2e-13 79.0 364 27.2
Os12g0606900 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 9.2e-13 79.0 72 50.0
Zm00001eb031350 Zea mays HOM05D001292 ORTHO05D001202 9.2e-13 79.0 84 44.0
A02p26910 Brassica napus HOM05D015699 ORTHO05D013665 2.1e-12 77.8 79 48.1
Sp1g09220 Schrenkiella parvula HOM05D001292 ORTHO05D001202 2.1e-12 77.8 343 25.9
Aa31LG1G4360 Aethionema arabicum HOM05D001292 ORTHO05D001202 2.7e-12 77.4 397 24.4
Lsat_1_v5_gn_8_157321 Lactuca sativa HOM05D001292 ORTHO05D001202 2.7e-12 77.4 413 25.9
Zm00001eb153850 Zea mays HOM05D001292 ORTHO05D001202 6.0e-12 76.3 74 48.6
Mapoly0025s0054 Marchantia polymorpha HOM05D001292 ORTHO05D001202 1.7e-11 74.7 75 41.3
BraA09t37393Z Brassica rapa HOM05D001292 ORTHO05D001202 3.9e-11 73.6 411 26.0
Os06g0487900 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 5.1e-11 73.2 71 47.9
Zm00001eb208510 Zea mays HOM05D001292 ORTHO05D001202 5.1e-11 73.2 70 48.6
Solyc04g026220.4 Solanum lycopersicum HOM05D001292 ORTHO05D001202 6.6e-11 72.8 63 60.3
Os01g0738100 Oryza sativa ssp. japonica HOM05D001292 ORTHO05D001202 8.6e-11 72.4 355 24.8
A06p07320 Brassica napus HOM05D001292 ORTHO05D001202 1.9e-10 71.2 399 25.6
AUR62014034 Chenopodium quinoa HOM05D001292 ORTHO05D001202 1.9e-10 71.2 206 30.6
Carub.0001s1001 Capsella rubella HOM05D001292 ORTHO05D001202 2.5e-10 70.9 393 27.0
C05p08830 Brassica napus HOM05D001292 ORTHO05D001202 3.3e-10 70.5 397 25.7
A02p26940 Brassica napus HOM05D001292 ORTHO05D001202 4.3e-10 70.1 74 43.2
BraA02t07707Z Brassica rapa HOM05D001292 ORTHO05D001202 4.3e-10 70.1 74 43.2
Pp3c5_19870 Physcomitrium patens HOM05D001292 ORTHO05D001202 4.3e-10 70.1 77 48.1
Pp3c9_4420 Physcomitrium patens HOM05D001292 ORTHO05D001202 5.6e-10 69.7 73 45.2
AagrBONN_evm.TU.Sc2ySwM_228.75 Anthoceros agrestis HOM05D001292 ORTHO05D001202 9.5e-10 68.9 77 42.9
BcaC05g24868 Brassica carinata HOM05D001292 ORTHO05D001202 9.5e-10 68.9 373 24.7
BolC5t29630H Brassica oleracea HOM05D001292 ORTHO05D001202 2.8e-09 67.4 386 25.1
AT1G10570 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 4.7e-09 66.6 412 26.5
SMO347G0330 Selaginella moellendorffii HOM05D001292 ORTHO05D001202 4.7e-09 66.6 69 42.0
SGA_v2.0_scaffold8G04227 Striga asiatica HOM05D001292 ORTHO05D001202 4.7e-09 66.6 352 23.6
CBR_g324 Chara braunii HOM05D001292 ORTHO05D001202 1.4e-08 65.1 70 40.0
THA.LOC104820191 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 9.9e-07 58.9 85 35.3
AL1G20280 Arabidopsis lyrata HOM05D001292 ORTHO05D001202 1.7e-06 58.2 83 37.3
AT1G09730 Arabidopsis thaliana HOM05D001292 ORTHO05D001202 1.7e-06 58.2 83 37.3
CARHR009700 Cardamine hirsuta HOM05D001292 ORTHO05D001202 1.7e-06 58.2 83 37.3
THA.LOC104816798 Tarenaya hassleriana HOM05D001292 ORTHO05D001202 1.7e-06 58.2 85 36.5
Pp3c15_7620 Physcomitrium patens HOM05D001292 ORTHO05D001202 2.2e-06 57.8 71 40.8
Carub.0001s0907 Capsella rubella HOM05D001292 ORTHO05D001202 2.9e-06 57.4 83 37.3
Thhalv10006645m.g Eutrema salsugineum HOM05D001292 ORTHO05D001202 2.9e-06 57.4 76 35.5
SMO361G0085 Selaginella moellendorffii HOM05D001292 ORTHO05D001202 2.9e-06 57.4 70 40.0
arahy.Tifrunner.gnm1.ann1.6V6D2H Arachis hypogaea HOM05D001292 ORTHO05D001202 3.7e-06 57.0 82 32.9
arahy.Tifrunner.gnm1.ann1.72ZBT8 Arachis hypogaea HOM05D001292 ORTHO05D001202 3.7e-06 57.0 82 32.9
BraA06t23852Z Brassica rapa HOM05D001292 ORTHO05D001202 3.7e-06 57.0 85 37.6
BcaNung06984 Brassica carinata HOM05D001292 ORTHO05D001202 6.4e-06 56.2 83 36.1
A06p06410 Brassica napus HOM05D001292 ORTHO05D001202 6.4e-06 56.2 85 37.6
C08p13140 Brassica napus HOM05D001292 ORTHO05D001202 6.4e-06 56.2 83 36.1
BolC8t48942H Brassica oleracea HOM05D001292 ORTHO05D001202 6.4e-06 56.2 83 36.1
BraA08t35351Z Brassica rapa HOM05D001292 ORTHO05D001202 6.4e-06 56.2 83 36.1
Solyc05g005630.4 Solanum lycopersicum HOM05D001292 ORTHO05D001202 6.4e-06 56.2 72 47.2
AagrBONN_evm.TU.Sc2ySwM_228.281 Anthoceros agrestis HOM05D001292 ORTHO05D001202 8.4e-06 55.8 346 25.1
Sp1g08320 Schrenkiella parvula HOM05D001292 ORTHO05D001202 8.4e-06 55.8 83 37.3


User provided reference genes

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