Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G284600 Glycine max HOM05D004907 ORTHO05D005707 5.4e-231 803.9 385 100.0
Glyma.18G141000 Glycine max HOM05D004907 ORTHO05D005707 1.9e-191 672.5 386 84.2
Phvul.003G062300 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 2.2e-152 542.7 390 68.7
Lj4g0000696 Lotus japonicus HOM05D004907 ORTHO05D005707 1.4e-143 513.5 374 69.5
Psat5g210760 Pisum sativum HOM05D004907 ORTHO05D005707 4.2e-135 485.3 383 63.2
Glyma.02G036400 Glycine max HOM05D004907 ORTHO05D005707 3.5e-129 465.7 369 64.5
Medtr8g069800 Medicago truncatula HOM05D004907 ORTHO05D005707 1.9e-127 459.9 385 60.0
Glyma.01G028800 Glycine max HOM05D004907 ORTHO05D005707 3.2e-127 459.1 370 63.5
TPR.G24774 Trifolium pratense HOM05D004907 ORTHO05D005707 4.7e-126 455.3 389 58.6
VMungo1215G1811 Vigna mungo HOM05D004907 ORTHO05D005707 4.4e-124 448.7 367 61.6
Ca_03137_v3 Cicer arietinum L. HOM05D004907 ORTHO05D005707 1.4e-122 443.7 373 59.2
Lalb_Chr05g0216711 Lupinus albus HOM05D004907 ORTHO05D005707 5.4e-122 441.8 371 59.3
Lj2g0022644 Lotus japonicus HOM05D004907 ORTHO05D005707 1.9e-119 433.3 370 58.6
Medtr5g043750 Medicago truncatula HOM05D004907 ORTHO05D005707 4.1e-114 415.6 373 57.4
Haze_12215 Corylus avellana HOM05D004907 ORTHO05D005707 1.5e-111 407.1 371 53.4
Medtr5g033880 Medicago truncatula HOM05D004907 ORTHO05D005707 2.1e-110 403.3 381 57.2
Psat2g106360 Pisum sativum HOM05D004907 ORTHO05D005707 2.8e-110 402.9 371 55.5
Cfa009181 Carpinus fangiana HOM05D004907 ORTHO05D005707 4.0e-109 399.1 371 53.1
QL03p059196 Quercus lobata HOM05D004907 ORTHO05D005707 1.3e-107 394.0 371 54.7
Prupe.1G249900 Prunus persica HOM05D004907 ORTHO05D005707 2.2e-107 393.3 376 55.1
CiPaw.05G186900 Carya illinoinensis HOM05D004907 ORTHO05D005707 8.0e-102 374.8 366 52.2
Manes.13G027600 Manihot esculenta HOM05D004907 ORTHO05D005707 1.2e-100 370.9 375 50.7
CiPaw.06G069900 Carya illinoinensis HOM05D004907 ORTHO05D005707 2.0e-100 370.2 369 50.4
Hma1.2p1_0160F.1_g071120 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 2.0e-100 370.2 369 51.2
Cfa009182 Carpinus fangiana HOM05D004907 ORTHO05D005707 1.9e-98 363.6 372 48.9
TAR374G1110 Trochodendron aralioides HOM05D004907 ORTHO05D005707 1.9e-98 363.6 369 49.3
MD13G1095300 Malus domestica HOM05D004907 ORTHO05D005707 5.4e-98 362.1 370 50.8
MD16G1096400 Malus domestica HOM05D004907 ORTHO05D005707 9.2e-98 361.3 373 50.4
FAN12G3344 Fragaria x ananassa HOM05D004907 ORTHO05D005707 2.0e-97 360.1 374 51.1
FAN07G1203 Fragaria x ananassa HOM05D004907 ORTHO05D005707 3.5e-97 359.4 367 50.4
FvH4_4g32970 Fragaria vesca HOM05D004907 ORTHO05D005707 6.0e-97 358.6 374 50.8
RcHm_v2.0_Chr4g0441991 Rosa chinensis HOM05D004907 ORTHO05D005707 6.0e-97 358.6 371 50.9
CANSAT01G1025 Cannabis sativa HOM05D004907 ORTHO05D005707 1.3e-96 357.5 374 49.2
CAN.G728.4 Capsicum annuum HOM05D004907 ORTHO05D005707 2.3e-96 356.7 377 48.0
Gohir.D02G160600 Gossypium hirsutum HOM05D004907 ORTHO05D005707 2.3e-96 356.7 371 49.9
Atru.chr11.2072 Acer truncatum HOM05D004907 ORTHO05D005707 8.6e-96 354.8 352 52.6
FAN22G1867 Fragaria x ananassa HOM05D004907 ORTHO05D005707 1.1e-95 354.4 369 49.9
Duzib268G1138 Durio zibethinus HOM05D004907 ORTHO05D005707 2.5e-95 353.2 371 49.9
PGSC0003DMG400013488 Solanum tuberosum HOM05D004907 ORTHO05D005707 1.2e-94 350.9 367 49.3
Phvul.002G064500 Phaseolus vulgaris HOM05D004907 ORTHO05D005707 3.6e-94 349.4 244 68.0
Thecc.02G254700 Theobroma cacao HOM05D004907 ORTHO05D005707 6.2e-94 348.6 376 49.2
Duzib268G1696 Durio zibethinus HOM05D004907 ORTHO05D005707 1.1e-93 347.8 373 50.7
Gohir.D01G149900 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.8e-93 347.1 374 49.2
FAN17G0584 Fragaria x ananassa HOM05D004907 ORTHO05D005707 4.0e-93 345.9 367 49.0
CSS0001528 Camellia sinensis var. sinensis HOM05D004907 ORTHO05D005707 8.9e-93 344.7 369 50.1
Nitab4.5_0000338g0040 Nicotiana tabacum HOM05D004907 ORTHO05D005707 8.9e-93 344.7 377 47.5
Nitab4.5_0015209g0010 Nicotiana tabacum HOM05D004907 ORTHO05D005707 1.2e-92 344.4 367 48.5
DCAR_007072 Daucus carota HOM05D004907 ORTHO05D005707 2.6e-92 343.2 379 47.8
Gorai.002G186000 Gossypium raimondii HOM05D004907 ORTHO05D005707 5.8e-92 342.0 374 48.7
Lj6P808T27 Lonicera japonica HOM05D004907 ORTHO05D005707 7.5e-92 341.7 374 48.7
Sopen05g001160 Solanum pennellii HOM05D004907 ORTHO05D005707 1.3e-91 340.9 367 48.2
PGR119G0630 Punica granatum HOM05D004907 ORTHO05D005707 2.9e-91 339.7 368 48.1
MD16G1096500 Malus domestica HOM05D004907 ORTHO05D005707 1.4e-90 337.4 366 48.9
HanXRQChr06g0173591 Helianthus annuus HOM05D004907 ORTHO05D005707 2.4e-90 336.7 386 47.9
Ciclev10031561m.g Citrus clementina HOM05D004907 ORTHO05D005707 3.2e-90 336.3 375 49.1
Solyc05g005150.1 Solanum lycopersicum HOM05D004907 ORTHO05D005707 3.2e-90 336.3 367 47.7
Hma1.2p1_0223F.1_g094330 Hydrangea macrophylla HOM05D004907 ORTHO05D005707 5.4e-90 335.5 382 50.0
Sabra10G0024600 Salix brachista HOM05D004907 ORTHO05D005707 5.4e-90 335.5 399 47.1
Lsat_1_v5_gn_3_28580 Lactuca sativa HOM05D004907 ORTHO05D005707 7.1e-90 335.1 377 46.2
Rhsim12G0042700 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.2e-89 334.3 374 47.6
Sc04g0009300 Simmondsia chinensis HOM05D004907 ORTHO05D005707 1.0e-88 331.3 386 48.2
Potri.010G042900 Populus trichocarpa HOM05D004907 ORTHO05D005707 1.3e-88 330.9 401 45.9
Gohir.A05G313700 Gossypium hirsutum HOM05D004907 ORTHO05D005707 5.1e-88 328.9 377 46.4
Lalb_Chr09g0326261 Lupinus albus HOM05D004907 ORTHO05D005707 1.5e-87 327.4 369 48.8
Cc11_g15390 Coffea canephora HOM05D004907 ORTHO05D005707 1.9e-87 327.0 369 45.8
Gorai.005G180700 Gossypium raimondii HOM05D004907 ORTHO05D005707 7.3e-87 325.1 371 46.6
Eucgr.H02549 Eucalyptus grandis HOM05D004907 ORTHO05D005707 1.6e-86 323.9 376 45.5
Oeu001729.1 Olea europaea HOM05D004907 ORTHO05D005707 2.8e-86 323.2 367 45.2
Gohir.A03G137500 Gossypium hirsutum HOM05D004907 ORTHO05D005707 3.6e-86 322.8 371 46.4
Nn4g22709 Nelumbo nucifera HOM05D004907 ORTHO05D005707 8.1e-86 321.6 386 45.1
AUR62014077 Chenopodium quinoa HOM05D004907 ORTHO05D005707 2.0e-84 317.0 385 44.2
PSO170G6868 Papaver somniferum HOM05D004907 ORTHO05D005707 2.6e-84 316.6 373 44.0
PSO441G0001 Papaver somniferum HOM05D004907 ORTHO05D005707 2.6e-84 316.6 373 44.0
Gorai.009G337200 Gossypium raimondii HOM05D004907 ORTHO05D005707 3.4e-84 316.2 378 46.6
Lsat_1_v5_gn_8_154601 Lactuca sativa HOM05D004907 ORTHO05D005707 3.4e-84 316.2 362 45.6
MSTRG.7910 Avicennia marina HOM05D004907 ORTHO05D005707 1.3e-83 314.3 375 45.1
PSO782G1891 Papaver somniferum HOM05D004907 ORTHO05D005707 1.3e-83 314.3 377 44.6
Rhsim12G0113900 Rhododendron simsii HOM05D004907 ORTHO05D005707 1.3e-83 314.3 372 46.2
ClCG05G025500 Citrullus lanatus HOM05D004907 ORTHO05D005707 3.8e-83 312.8 368 44.0
AUR62005416 Chenopodium quinoa HOM05D004907 ORTHO05D005707 6.4e-83 312.0 382 44.2
Eucgr.H02548 Eucalyptus grandis HOM05D004907 ORTHO05D005707 8.4e-83 311.6 377 44.8
Gohir.A01G160100 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.9e-82 310.5 317 49.8
MELO3C011980.2 Cucumis melo HOM05D004907 ORTHO05D005707 3.2e-82 309.7 377 42.4
CsaV3_5G031400 Cucumis sativus L. HOM05D004907 ORTHO05D005707 7.1e-82 308.5 377 43.0
Haze_12216 Corylus avellana HOM05D004907 ORTHO05D005707 1.2e-81 307.8 372 44.6
PSO063G4965 Papaver somniferum HOM05D004907 ORTHO05D005707 1.6e-81 307.4 371 42.9
TWI36G0219 Tripterygium wilfordii HOM05D004907 ORTHO05D005707 3.5e-81 306.2 380 47.4
MSTRG.2405 Avicennia marina HOM05D004907 ORTHO05D005707 4.6e-81 305.8 364 46.4
Actinidia27794 Actinidia chinensis HOM05D004907 ORTHO05D005707 6.0e-81 305.4 368 45.4
C05p22690 Brassica napus HOM05D004907 ORTHO05D005707 7.3e-79 298.5 381 43.8
BolC5t30967H Brassica oleracea HOM05D004907 ORTHO05D005707 7.3e-79 298.5 381 43.8
PSO144G0054 Papaver somniferum HOM05D004907 ORTHO05D005707 9.6e-79 298.1 376 42.6
Thecc.02G254800 Theobroma cacao HOM05D004907 ORTHO05D005707 2.8e-78 296.6 373 46.9
BraA09t39619Z Brassica rapa HOM05D004907 ORTHO05D005707 8.1e-78 295.0 382 43.7
A09p41240 Brassica napus HOM05D004907 ORTHO05D005707 2.4e-77 293.5 378 43.9
Thhalv10007835m.g Eutrema salsugineum HOM05D004907 ORTHO05D005707 2.4e-77 293.5 386 44.0
PSO170G1656 Papaver somniferum HOM05D004907 ORTHO05D005707 2.4e-77 293.5 370 41.1
BcaC05g26256 Brassica carinata HOM05D004907 ORTHO05D005707 6.9e-77 292.0 374 43.6
Oeu056415.1 Olea europaea HOM05D004907 ORTHO05D005707 3.4e-76 289.7 379 40.1
Migut.L01466 Erythranthe guttata HOM05D004907 ORTHO05D005707 1.3e-75 287.7 370 43.2
BcaB07g32334 Brassica carinata HOM05D004907 ORTHO05D005707 2.2e-75 287.0 385 43.4
PGR102G3060 Punica granatum HOM05D004907 ORTHO05D005707 3.8e-75 286.2 378 41.5
THA.LOC104822976 Tarenaya hassleriana HOM05D004907 ORTHO05D005707 3.8e-75 286.2 385 44.9
Aqoxy3G02876 Aquilegia oxysepala HOM05D004907 ORTHO05D005707 4.9e-75 285.8 371 39.9
Sp1g20830 Schrenkiella parvula HOM05D004907 ORTHO05D005707 2.4e-74 283.5 383 43.9
AT1G23390 Arabidopsis thaliana HOM05D004907 ORTHO05D005707 2.1e-73 280.4 383 44.1
Aa31LG7G7420 Aethionema arabicum HOM05D004907 ORTHO05D005707 1.7e-72 277.3 382 42.1
SalBow3G2985 Salvia bowleyana HOM05D004907 ORTHO05D005707 3.9e-72 276.2 370 43.2
Oeu056417.1 Olea europaea HOM05D004907 ORTHO05D005707 6.6e-72 275.4 377 40.8
CARHR023830 Cardamine hirsuta HOM05D004907 ORTHO05D005707 1.1e-71 274.6 383 42.3
SalBow2G1155 Salvia bowleyana HOM05D004907 ORTHO05D005707 4.3e-71 272.7 369 41.5
AL1G37180 Arabidopsis lyrata HOM05D004907 ORTHO05D005707 5.6e-71 272.3 391 41.2
Oeu055460.1 Olea europaea HOM05D004907 ORTHO05D005707 1.3e-70 271.2 378 41.0
SGA_v2.0_scaffold63G21708 Striga asiatica HOM05D004907 ORTHO05D005707 4.8e-70 269.2 371 44.7
Carub.0001s2297 Capsella rubella HOM05D004907 ORTHO05D005707 1.8e-69 267.3 392 40.6
GSVIVG01013786001 Vitis vinifera HOM05D004907 ORTHO05D005707 4.5e-68 262.7 273 47.6
Dinv15270 Davidia involucrata HOM05D004907 ORTHO05D005707 4.9e-67 259.2 270 47.8
Sed0025966 Sechium edule HOM05D002061 ORTHO05D005707 1.9e-66 257.3 368 40.2
Sed0027759 Sechium edule HOM05D004907 ORTHO05D005707 2.1e-65 253.8 381 39.4
ClCG08G017860 Citrullus lanatus HOM05D002061 ORTHO05D005707 3.0e-64 250.0 405 41.0
Hund25371 Selenicereus undatus HOM05D004907 ORTHO05D005707 3.9e-64 249.6 372 37.6
Gohir.D05G315200 Gossypium hirsutum HOM05D004907 ORTHO05D005707 1.5e-63 247.7 232 52.6
CDE06G1150 Ceratophyllum demersum HOM05D004907 ORTHO05D005707 1.3e-62 244.6 348 38.2
COL.COLO4_24215 Corchorus olitorius HOM05D004907 ORTHO05D005707 2.8e-62 243.4 268 46.6
Peaxi162Scf00158g00003 Petunia axillaris HOM05D004907 ORTHO05D005707 6.2e-62 242.3 277 45.1
Ah.03g132850 Amaranthus hybridus HOM05D000168 ORTHO05D000811 1.8e-61 240.7 291 43.3
Oeu056728.1 Olea europaea HOM05D004907 ORTHO05D005707 1.7e-59 234.2 296 44.6
Actinidia08149 Actinidia chinensis HOM05D004907 ORTHO05D005707 1.3e-54 218.0 263 46.0
ATR1091G111 Amborella trichopoda HOM05D004907 ORTHO05D005707 4.9e-51 206.1 375 33.9
PSO478G2945 Papaver somniferum HOM05D004907 ORTHO05D005707 6.7e-48 195.7 175 52.6
PSO357G0455 Papaver somniferum HOM05D004907 ORTHO05D005707 1.5e-47 194.5 212 45.3
EL10Ac6g13709 Beta vulgaris HOM05D004907 ORTHO05D005707 2.4e-45 187.2 224 43.3
TPR.G21504 Trifolium pratense HOM05D004907 ORTHO05D005707 9.3e-42 175.3 175 53.7
Nn3g16812 Nelumbo nucifera HOM05D004907 ORTHO05D005707 1.2e-36 158.3 183 47.0
MD13G1280300 Malus domestica HOM05D004907 ORTHO05D005707 6.5e-35 152.5 197 44.2
Zm00001eb155550 Zea mays HOM05D004907 ORTHO05D005707 2.2e-30 137.5 394 29.7
COL.COLO4_24217 Corchorus olitorius HOM05D004907 ORTHO05D005707 3.4e-28 130.2 209 39.2
HPP92_008048 Vanilla planifolia HOM05D004907 ORTHO05D005707 7.2e-26 122.5 364 29.4
Os09g0292900 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.6e-25 120.2 393 28.0
TPR.G15291 Trifolium pratense HOM05D007853 ORTHO05D009873 4.7e-25 119.8 356 28.7
Mapoly0119s0024 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.4e-24 118.2 352 29.5
vmacro14766 Vaccinium macrocarpon HOM05D007853 ORTHO05D009873 1.8e-24 117.9 359 27.6
Mapoly0119s0021 Marchantia polymorpha HOM05D007853 ORTHO05D009873 1.1e-23 115.2 265 29.8
Actinidia23732 Actinidia chinensis HOM05D007853 ORTHO05D009873 2.0e-23 114.4 352 25.0
Thhalv10002571m.g Eutrema salsugineum HOM05D007853 ORTHO05D009873 1.7e-22 111.3 377 28.1
Cfa009183 Carpinus fangiana HOM05D004907 ORTHO05D005707 6.3e-22 109.4 134 43.3
ATR0787G102 Amborella trichopoda HOM05D007853 ORTHO05D009873 1.4e-21 108.2 375 25.9
TWI18G0437 Tripterygium wilfordii HOM05D007853 ORTHO05D009873 4.1e-21 106.7 377 26.3
Actinidia09494 Actinidia chinensis HOM05D007853 ORTHO05D009873 9.1e-21 105.5 356 25.0
Ca_07539_v3 Cicer arietinum L. HOM05D007853 ORTHO05D009873 1.2e-20 105.1 361 28.0
Medtr0197s0070 Medicago truncatula HOM05D007853 ORTHO05D009873 1.6e-20 104.8 358 28.5
Medtr7g059040 Medicago truncatula HOM05D007853 ORTHO05D009873 1.6e-20 104.8 358 28.5
FAN15G1839 Fragaria x ananassa HOM05D007853 ORTHO05D009873 4.5e-20 103.2 388 24.7
Prupe.8G204900 Prunus persica HOM05D007853 ORTHO05D009873 5.9e-20 102.8 376 26.1
Os01g0704300 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 7.7e-20 102.4 277 31.4
FAN24G3434 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.7e-19 101.3 389 24.7
Psat3g143800 Pisum sativum HOM05D007853 ORTHO05D009873 1.7e-19 101.3 350 28.6
FvH4_2g19330 Fragaria vesca HOM05D007853 ORTHO05D009873 3.8e-19 100.1 391 24.6
unitig_8.g2924 Utricularia gibba HOM05D004907 ORTHO05D005707 3.8e-19 100.1 114 44.7
FAN27G0897 Fragaria x ananassa HOM05D007853 ORTHO05D009873 1.1e-18 98.6 361 25.8
Glyma.08G356100 Glycine max HOM05D007853 ORTHO05D009873 1.1e-18 98.6 361 25.8
Glyma.18G173200 Glycine max HOM05D007853 ORTHO05D009873 1.9e-18 97.8 363 25.9
Os02g0465600 Oryza sativa ssp. japonica HOM05D004907 ORTHO05D005707 3.2e-18 97.1 226 31.0
THA.LOC104804604 Tarenaya hassleriana HOM05D007853 ORTHO05D009873 5.5e-18 96.3 377 26.0
CARHR101120 Cardamine hirsuta HOM05D007853 ORTHO05D009873 9.4e-18 95.5 379 25.1
Phvul.008G123400 Phaseolus vulgaris HOM05D007853 ORTHO05D009873 9.4e-18 95.5 355 26.8
Carub.0003s2515 Capsella rubella HOM05D007853 ORTHO05D009873 1.6e-17 94.7 377 25.7
MD05G1178400 Malus domestica HOM05D007853 ORTHO05D009873 2.1e-17 94.4 357 25.5
CiPaw.04G106700 Carya illinoinensis HOM05D007853 ORTHO05D009873 4.7e-17 93.2 359 24.5
VMungo1383G0232 Vigna mungo HOM05D007853 ORTHO05D009873 8.0e-17 92.4 353 26.1
Cfa002555 Carpinus fangiana HOM05D007853 ORTHO05D009873 1.4e-16 91.7 357 25.8
CiPaw.03G151300 Carya illinoinensis HOM05D007853 ORTHO05D009873 1.8e-16 91.3 394 24.9
Pp3c10_6380 Physcomitrium patens HOM05D007853 ORTHO05D009873 2.3e-16 90.9 284 26.1
TPR.G18320 Trifolium pratense HOM05D004907 ORTHO05D005707 2.3e-16 90.9 99 50.5
Nn2g13938 Nelumbo nucifera HOM05D004907 ORTHO05D005707 3.0e-16 90.5 91 48.4
Nn2g13937 Nelumbo nucifera HOM05D004907 ORTHO05D005707 2.0e-15 87.8 112 43.8
Medtr5g033860 Medicago truncatula HOM05D004907 ORTHO05D005707 7.5e-15 85.9 97 50.5
Pp3c2_14180 Physcomitrium patens HOM05D007853 ORTHO05D009873 9.7e-15 85.5 347 22.8
unitig_8.g2923 Utricularia gibba HOM05D004907 ORTHO05D005707 4.8e-14 83.2 87 44.8


User provided reference genes

Program Settings