Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G252600 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 5428.6 2759 100.0
Glyma.18G275200 Glycine max HOM05D003926 ORTHO05D005273 0.0e+00 5124.7 2754 94.7
Phvul.008G025700 Phaseolus vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 4788.0 2750 88.7
Lj1g0024205 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 4573.1 2750 84.1
TPR.G23405 Trifolium pratense HOM05D003926 ORTHO05D005273 0.0e+00 4555.0 2750 83.8
Ca_06914_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 4528.4 2752 83.6
Ca_06916_v3 Cicer arietinum L. HOM05D003926 ORTHO05D005273 0.0e+00 4528.4 2752 83.6
Psat3g203080 Pisum sativum HOM05D003926 ORTHO05D005273 0.0e+00 4491.4 2751 82.5
Medtr7g017100 Medicago truncatula HOM05D003926 ORTHO05D005273 0.0e+00 4465.6 2754 82.5
arahy.Tifrunner.gnm1.ann1.FDTJ9Q Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 4246.8 2761 78.8
arahy.Tifrunner.gnm1.ann1.IQIT5J Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 4239.1 2734 79.2
Lalb_Chr21g0318281 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 4111.6 2755 75.7
Haze_14378 Corylus avellana HOM05D003926 ORTHO05D005273 0.0e+00 3645.5 2750 68.2
Cfa007698 Carpinus fangiana HOM05D003926 ORTHO05D005273 0.0e+00 3624.3 2750 67.6
Lalb_Chr06g0174881 Lupinus albus HOM05D003926 ORTHO05D005273 0.0e+00 3612.4 2757 68.9
QL02p065183 Quercus lobata HOM05D003926 ORTHO05D005273 0.0e+00 3600.1 2811 66.1
Prupe.3G248400 Prunus persica HOM05D003926 ORTHO05D005273 0.0e+00 3583.1 2758 66.7
Dinv34905 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 3548.8 2758 65.4
CiPaw.03G082600 Carya illinoinensis HOM05D003926 ORTHO05D005273 0.0e+00 3533.0 2635 68.2
RcHm_v2.0_Chr2g0164791 Rosa chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3518.0 2760 65.7
MD09G1075600 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 3488.7 2758 65.0
Atru.chr8.620 Acer truncatum HOM05D003926 ORTHO05D005273 0.0e+00 3486.0 2761 65.0
FvH4_6g46320 Fragaria vesca HOM05D003926 ORTHO05D005273 0.0e+00 3466.8 2759 64.8
CANSAT64G0948 Cannabis sativa HOM05D003926 ORTHO05D005273 0.0e+00 3454.5 2761 64.9
MD17G1066300 Malus domestica HOM05D003926 ORTHO05D005273 0.0e+00 3454.1 2761 64.7
Thecc.04G107500 Theobroma cacao HOM05D003926 ORTHO05D005273 0.0e+00 3443.3 2748 64.9
CSS0025257 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3432.9 2744 63.5
CSS0002647 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 0.0e+00 3430.6 2744 63.5
Potri.017G101100 Populus trichocarpa HOM05D003926 ORTHO05D005273 0.0e+00 3404.4 2764 63.4
Ciclev10010885m.g Citrus clementina HOM05D003926 ORTHO05D005273 0.0e+00 3383.6 2770 63.5
TAR374G0863 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 3365.5 2757 62.7
Manes.02G059900 Manihot esculenta HOM05D003926 ORTHO05D005273 0.0e+00 3363.2 2768 62.7
Sabra17G0086900 Salix brachista HOM05D003926 ORTHO05D005273 0.0e+00 3362.8 2764 62.8
Duzib133G0169 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 3341.2 2747 63.2
Actinidia18083 Actinidia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 3323.9 2755 61.5
Gorai.001G206500 Gossypium raimondii HOM05D003926 ORTHO05D005273 0.0e+00 3320.8 2746 62.9
Lj4C124T8 Lonicera japonica HOM05D003926 ORTHO05D005273 0.0e+00 3311.9 2815 61.3
Rhsim10G0059600 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 3293.1 2758 61.1
TWI32G0285 Tripterygium wilfordii HOM05D003926 ORTHO05D005273 0.0e+00 3266.5 2754 61.8
ClCG11G004990 Citrullus lanatus HOM05D003926 ORTHO05D005273 0.0e+00 3255.7 2791 60.4
MELO3C022053.2 Cucumis melo HOM05D003926 ORTHO05D005273 0.0e+00 3235.7 2757 60.5
TAR622G1093 Trochodendron aralioides HOM05D003926 ORTHO05D005273 0.0e+00 3231.8 2645 62.9
Nn3g17538 Nelumbo nucifera HOM05D003926 ORTHO05D005273 0.0e+00 3217.9 2756 60.3
CsaV3_5G038720 Cucumis sativus L. HOM05D003926 ORTHO05D005273 0.0e+00 3204.8 2745 60.3
Sed0020046 Sechium edule HOM05D003926 ORTHO05D005273 0.0e+00 3199.5 2771 60.0
Duzib211G0130 Durio zibethinus HOM05D003926 ORTHO05D005273 0.0e+00 3132.0 2747 60.1
DCAR_011007 Daucus carota HOM05D003926 ORTHO05D005273 0.0e+00 3104.7 2756 58.6
PGR004G0818 Punica granatum HOM05D003926 ORTHO05D005273 0.0e+00 3096.2 2759 58.2
PSO063G5950 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 3080.0 2743 57.9
HanXRQChr15g0464821 Helianthus annuus HOM05D003926 ORTHO05D005273 0.0e+00 3075.8 2758 59.6
Cc07_g04520 Coffea canephora HOM05D003926 ORTHO05D005273 0.0e+00 3073.5 2777 58.2
CAN.G497.55 Capsicum annuum HOM05D003926 ORTHO05D005273 0.0e+00 3073.1 2764 58.1
PSO782G5674 Papaver somniferum HOM05D003926 ORTHO05D005273 0.0e+00 3070.8 2743 57.7
MBI15_g05000_MAGBIO Magnolia biondii HOM05D003926 ORTHO05D005273 0.0e+00 3070.4 2763 57.8
Sopen02g034050 Solanum pennellii HOM05D003926 ORTHO05D005273 0.0e+00 3064.2 2757 58.3
Solyc02g089260.4 Solanum lycopersicum HOM05D003926 ORTHO05D005273 0.0e+00 3053.8 2756 58.2
ECA232G4780 Erigeron canadensis HOM05D003926 ORTHO05D005273 0.0e+00 3041.9 2738 58.4
Gohir.A07G179100 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 3036.1 2746 58.5
arahy.Tifrunner.gnm1.ann1.DT5ZWB Arachis hypogaea HOM05D003926 ORTHO05D005273 0.0e+00 3032.7 2087 75.0
AUR62009475 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 3018.4 2769 57.9
Aqoxy3G03752 Aquilegia oxysepala HOM05D003926 ORTHO05D005273 0.0e+00 3002.2 2762 57.1
Lsat_1_v5_gn_4_173381 Lactuca sativa HOM05D003926 ORTHO05D005273 0.0e+00 2992.6 2754 58.9
AUR62023153 Chenopodium quinoa HOM05D003926 ORTHO05D005273 0.0e+00 2990.3 2788 57.5
GSVIVG01036538001 Vitis vinifera HOM05D003926 ORTHO05D005273 0.0e+00 2964.5 2787 57.4
Hund16238 Selenicereus undatus HOM05D003926 ORTHO05D005273 0.0e+00 2961.4 2769 56.7
Migut.H00584 Erythranthe guttata HOM05D003926 ORTHO05D005273 0.0e+00 2949.8 2780 56.4
EL10Ac2g04434 Beta vulgaris HOM05D003926 ORTHO05D005273 0.0e+00 2946.0 2774 56.9
MSTRG.23855 Avicennia marina HOM05D003926 ORTHO05D005273 0.0e+00 2922.5 2764 56.4
Sc14g0004890 Simmondsia chinensis HOM05D003926 ORTHO05D005273 0.0e+00 2916.7 2777 56.1
Aa31LG5G12790 Aethionema arabicum HOM05D003926 ORTHO05D005273 0.0e+00 2873.2 2766 56.1
SGA_v2.0_scaffold52G19072 Striga asiatica HOM05D003926 ORTHO05D005273 0.0e+00 2864.7 2773 55.7
AL3G11530 Arabidopsis lyrata HOM05D003926 ORTHO05D005273 0.0e+00 2864.3 2751 56.3
Sp3g01330 Schrenkiella parvula HOM05D003926 ORTHO05D005273 0.0e+00 2857.4 2750 56.1
vmacro05611 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 0.0e+00 2853.9 2409 60.5
AT3G02260 Arabidopsis thaliana HOM05D003926 ORTHO05D005273 0.0e+00 2853.5 2752 55.8
Thhalv10019869m.g Eutrema salsugineum HOM05D003926 ORTHO05D005273 0.0e+00 2847.8 2766 55.7
CARHR076230 Cardamine hirsuta HOM05D003926 ORTHO05D005273 0.0e+00 2841.2 2753 55.8
THA.LOC104802985 Tarenaya hassleriana HOM05D003926 ORTHO05D005273 0.0e+00 2836.6 2756 55.5
Ah.16g101010 Amaranthus hybridus HOM05D003926 ORTHO05D005273 0.0e+00 2815.4 2772 55.5
C09p75640 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2814.3 2769 55.3
BolC5t35094H Brassica oleracea HOM05D003926 ORTHO05D005273 0.0e+00 2806.2 2771 55.3
A05p45150 Brassica napus HOM05D003926 ORTHO05D005273 0.0e+00 2804.6 2769 55.0
BraA05t23147Z Brassica rapa HOM05D003926 ORTHO05D005273 0.0e+00 2771.9 2796 54.3
Carub.0003s0138 Capsella rubella HOM05D003926 ORTHO05D005273 0.0e+00 2765.7 2568 57.6
ATR0691G267 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2735.7 2757 52.6
Dinv33869 Davidia involucrata HOM05D003926 ORTHO05D005273 0.0e+00 2723.3 2583 56.7
ATR1101G059 Amborella trichopoda HOM05D003926 ORTHO05D005273 0.0e+00 2685.2 2756 52.2
BcaC05g30341 Brassica carinata HOM05D003926 ORTHO05D005273 0.0e+00 2498.8 2718 52.2
COL.COLO4_10659 Corchorus olitorius HOM05D003926 ORTHO05D005273 0.0e+00 2472.6 1789 70.4
Nitab4.5_0009887g0010 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2463.0 2438 54.1
Nitab4.5_0001339g0050 Nicotiana tabacum HOM05D003926 ORTHO05D005273 0.0e+00 2449.1 2445 54.0
Os09g0247700 Oryza sativa ssp. japonica HOM05D003926 ORTHO05D005273 0.0e+00 2443.3 2775 48.7
SEGI_07483 Sequoiadendron giganteum HOM05D003926 ORTHO05D005273 0.0e+00 2296.2 2785 46.2
Zm00001eb308350 Zea mays HOM05D003926 ORTHO05D005273 0.0e+00 2291.2 2766 46.5
Peaxi162Scf00020g02342 Petunia axillaris HOM05D003926 ORTHO05D005273 0.0e+00 2036.2 1696 62.4
SHI25820 Sapria himalayana HOM05D003926 ORTHO05D005273 0.0e+00 2006.1 2447 46.8
Gohir.A07G178901 Gossypium hirsutum HOM05D003926 ORTHO05D005273 0.0e+00 1953.7 1922 54.6
CDE01G0304 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 0.0e+00 1939.1 2097 50.5
HPP92_020588 Vanilla planifolia HOM05D003926 ORTHO05D005273 0.0e+00 1797.3 2358 44.3
Mapoly0031s0115 Marchantia polymorpha HOM05D003926 ORTHO05D005273 0.0e+00 1756.9 2825 39.6
Pp3c11_22340 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1693.3 2860 39.4
Pp3c7_7030 Physcomitrium patens HOM05D003926 ORTHO05D005273 0.0e+00 1610.1 2863 37.6
AagrBONN_evm.TU.Sc2ySwM_344.3761 Anthoceros agrestis HOM05D003926 ORTHO05D005273 0.0e+00 1598.6 2852 37.6
SMO361G0659 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 0.0e+00 1526.1 2462 39.5
Lj1g0000156 Lotus japonicus HOM05D003926 ORTHO05D005273 0.0e+00 1521.5 847 90.2
FAN09G1503 Fragaria x ananassa HOM05D003926 ORTHO05D005273 0.0e+00 1379.8 1437 51.1
Rhsim05G0129500 Rhododendron simsii HOM05D003926 ORTHO05D005273 0.0e+00 1373.2 1729 46.2
CBR_g24086 Chara braunii HOM05D003926 ORTHO05D000048 3.0e-227 794.3 3568 24.6
Rhsim05G0129300 Rhododendron simsii HOM05D003926 ORTHO05D005273 2.1e-207 728.4 535 70.3
Peaxi162Scf00020g02344 Petunia axillaris HOM05D003926 ORTHO05D005273 8.1e-180 636.7 958 39.8
vmacro05610 Vaccinium macrocarpon HOM05D003926 ORTHO05D005273 1.4e-115 423.3 340 64.7
Actinidia36271 Actinidia chinensis HOM05D003926 ORTHO05D005273 3.2e-107 395.6 261 75.1
Eucgr.I02068 Eucalyptus grandis HOM05D003926 ORTHO05D005273 3.5e-106 392.1 273 71.4
MCO11G572 Micromonas commoda HOM05D003926 ORTHO05D005273 5.1e-89 335.1 961 27.4
Psat4g186360 Pisum sativum HOM05D003926 ORTHO05D005273 8.4e-76 291.2 157 88.5
Gohir.D07G186000 Gossypium hirsutum HOM05D003926 ORTHO05D005273 5.4e-75 288.5 185 75.1
Gohir.A07G178700 Gossypium hirsutum HOM05D003926 ORTHO05D005273 1.2e-74 287.3 185 74.6
Psat6g077960 Pisum sativum HOM05D003926 ORTHO05D005273 2.1e-74 286.6 179 78.2
CSS0003920 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.6e-71 275.8 192 71.9
CSS0037899 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 9.0e-70 271.2 192 71.4
Dinv33870 Davidia involucrata HOM05D003926 ORTHO05D005273 2.6e-69 269.6 158 77.8
CSS0007096 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 3.4e-69 269.2 189 72.0
CSS0009757 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 1.1e-67 264.2 189 69.8
PGSC0003DMG401001381 Solanum tuberosum HOM05D003926 ORTHO05D005273 1.1e-67 264.2 188 69.1
Psat3g106080 Pisum sativum HOM05D003926 ORTHO05D005273 9.3e-59 234.6 132 83.3
CSS0026086 Camellia sinensis var. sinensis HOM05D003926 ORTHO05D005273 2.7e-58 233.0 193 64.8
CDE01G0511 Ceratophyllum demersum HOM05D003926 ORTHO05D005273 2.5e-56 226.5 420 35.7
Psat4g170760 Pisum sativum HOM05D003926 ORTHO05D005273 6.7e-49 201.8 109 89.0
A05p29520 Brassica napus HOM05D003926 ORTHO05D005273 5.1e-41 175.6 606 27.2
Psat2g110320 Pisum sativum HOM05D003492 ORTHO05D005115 6.7e-41 175.3 134 69.4
VMungo1383G2275 Vigna mungo HOM05D003926 ORTHO05D005273 8.2e-39 168.3 110 83.6
Psat5g059720 Pisum sativum HOM05D000434 ORTHO05D007220 3.8e-36 159.5 186 51.6
Psat4g018040 Pisum sativum HOM05D003926 ORTHO05D005273 1.4e-30 141.0 116 67.2
Psat7g201680 Pisum sativum HOM05D003926 ORTHO05D005273 6.5e-28 132.1 89 76.4
Psat7g201760 Pisum sativum HOM05D003926 ORTHO05D005273 9.4e-27 128.3 89 75.3
Psat1g100800 Pisum sativum HOM05D003926 ORTHO05D005273 3.6e-26 126.3 85 77.6
SMO199G0087 Selaginella moellendorffii HOM05D003926 ORTHO05D005273 6.7e-25 122.1 142 50.0
CAN.G8.6 Capsicum annuum HOM05D003926 ORTHO05D010611 3.5e-21 109.8 201 36.8
Eucgr.I02066 Eucalyptus grandis HOM05D003926 ORTHO05D018213 1.3e-20 107.8 115 52.2
Sp7g04320 Schrenkiella parvula HOM05D003926 ORTHO05D005273 2.5e-19 103.6 84 56.0
Actinidia36270 Actinidia chinensis HOM05D003926 ORTHO05D038129 6.7e-17 95.5 281 27.8
Psat3g160120 Pisum sativum HOM05D003926 ORTHO05D005273 8.8e-17 95.1 70 70.0
QL10p058201 Quercus lobata HOM05D001813 ORTHO05D008124 8.8e-17 95.1 131 47.3
Cpa.g.sc3603.1 Carica papaya HOM05D003926 ORTHO05D018213 4.4e-16 92.8 103 47.6
SHI25822 Sapria himalayana HOM05D003926 ORTHO05D005273 2.2e-15 90.5 104 50.0
A05p29570 Brassica napus HOM05D003926 ORTHO05D010327 4.8e-15 89.4 259 29.0
COL.COLO4_10661 Corchorus olitorius HOM05D003926 ORTHO05D018213 1.8e-14 87.4 113 43.4
Psat2g086480 Pisum sativum HOM05D003926 ORTHO05D005273 1.0e-12 81.6 49 83.7
Psat7g240480 Pisum sativum HOM05D000029 ORTHO05D037355 2.9e-12 80.1 47 78.7
Psat1g150120 Pisum sativum HOM05D003313 ORTHO05D004217 1.1e-11 78.2 51 70.6
Dinv36991 Davidia involucrata HOM05D003926 ORTHO05D038129 7.2e-11 75.5 56 64.3
Actinidia14026 Actinidia chinensis HOM05D003926 ORTHO05D018213 1.2e-10 74.7 115 40.0
CDE01G0142 Ceratophyllum demersum HOM05D003926 ORTHO05D018213 2.6e-08 67.0 127 35.4
Pp3c22_5030 Physcomitrium patens HOM05D000005 ORTHO05D000239 2.2e-07 63.9 50 50.0
Nn1g06304 Nelumbo nucifera HOM05D003926 ORTHO05D018213 3.7e-07 63.2 114 36.8
Psat7g240520 Pisum sativum HOM05D000029 ORTHO05D037355 3.7e-07 63.2 32 90.6
Pp3c10_21693 Physcomitrium patens HOM05D000005 ORTHO05D000239 3.1e-06 60.1 59 44.1
MCO12G165 Micromonas commoda HOM05D002596 ORTHO05D002851 4.1e-06 59.7 61 44.3
Pp3c10_21680 Physcomitrium patens HOM05D000005 ORTHO05D000239 5.4e-06 59.3 65 40.0


User provided reference genes

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