Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 3.1e-187 658.3 323 100.0
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 8.9e-163 577.0 328 89.0
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 4.4e-162 574.7 327 88.7
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 4.2e-136 488.4 332 75.6
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 1.0e-134 483.8 325 73.8
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 3.1e-131 472.2 322 75.8
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 4.5e-130 468.4 315 74.9
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 4.5e-130 468.4 343 70.8
Psat3g198480 Pisum sativum HOM05D006539 ORTHO05D008694 1.3e-126 456.8 375 63.2
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 1.1e-125 453.8 350 69.4
arahy.Tifrunner.gnm1.ann1.54MYG6 Arachis hypogaea HOM05D006539 ORTHO05D008694 7.4e-125 451.1 353 68.0
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 2.1e-119 433.0 360 64.2
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 1.4e-118 430.3 279 74.9
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 6.7e-118 427.9 285 73.0
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 7.4e-117 424.5 353 63.7
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 8.2e-116 421.0 292 72.6
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 1.8e-115 419.9 337 64.4
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 2.6e-114 416.0 274 74.1
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 7.7e-114 414.5 283 71.0
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 7.7e-114 414.5 291 70.8
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 2.2e-113 412.9 301 67.4
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 3.8e-113 412.1 291 70.4
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 5.0e-113 411.8 276 74.6
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 5.0e-113 411.8 342 64.6
MD17G1055800 Malus domestica HOM05D006539 ORTHO05D008694 6.5e-113 411.4 361 61.5
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.1e-112 410.6 340 65.6
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 2.5e-112 409.5 286 70.6
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 7.2e-112 407.9 342 63.5
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 7.2e-112 407.9 355 62.5
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 7.2e-112 407.9 276 74.3
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 9.4e-112 407.5 271 73.1
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 1.2e-111 407.1 343 63.0
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 2.1e-111 406.4 351 62.7
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 3.6e-111 405.6 294 69.0
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 6.1e-111 404.8 280 70.7
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 1.4e-110 403.7 242 79.3
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 5.2e-110 401.7 332 63.6
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 1.5e-109 400.2 283 70.0
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 3.3e-109 399.1 292 68.5
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 1.7e-108 396.7 277 70.8
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 2.8e-108 396.0 285 69.1
PGSC0003DMG400001350 Solanum tuberosum HOM05D006539 ORTHO05D008694 3.7e-108 395.6 277 69.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 8.2e-108 394.4 253 75.5
Solyc02g088540.3 Solanum lycopersicum HOM05D006539 ORTHO05D008694 4.1e-107 392.1 285 67.7
Sopen02g033260 Solanum pennellii HOM05D006539 ORTHO05D008694 4.1e-107 392.1 282 68.8
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 5.3e-107 391.7 361 59.0
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 1.6e-106 390.2 289 66.1
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 3.5e-106 389.0 290 67.9
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 4.5e-106 388.7 273 68.5
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 5.9e-106 388.3 323 61.3
Oeu000853.1 Olea europaea HOM05D006539 ORTHO05D008694 5.9e-106 388.3 267 71.9
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 5.9e-106 388.3 344 60.8
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 7.7e-106 387.9 286 66.1
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 1.3e-105 387.1 350 62.0
CAN.G206.194 Capsicum annuum HOM05D006539 ORTHO05D008694 1.7e-105 386.7 317 62.5
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 2.2e-105 386.3 341 60.4
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 3.2e-104 382.5 273 68.9
Haze_14476 Corylus avellana HOM05D003516 ORTHO05D004068 9.4e-104 380.9 292 67.1
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 2.7e-103 379.4 347 61.1
AT5G15390 Arabidopsis thaliana HOM05D006539 ORTHO05D008694 4.7e-103 378.6 344 60.5
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 6.1e-103 378.3 283 66.1
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 8.0e-103 377.9 289 66.1
AUR62018139 Chenopodium quinoa HOM05D006539 ORTHO05D008694 1.0e-102 377.5 258 70.5
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 2.3e-102 376.3 238 76.5
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 3.0e-102 375.9 347 58.5
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 6.7e-102 374.8 356 55.9
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 6.7e-102 374.8 270 68.5
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 6.7e-102 374.8 287 65.9
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 3.3e-101 372.5 331 59.8
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 1.3e-100 370.5 277 66.8
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 2.2e-100 369.8 260 69.2
AL6G26250 Arabidopsis lyrata HOM05D006539 ORTHO05D008694 4.8e-100 368.6 345 58.6
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 1.4e-99 367.1 306 61.4
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 3.1e-99 365.9 288 63.9
HanXRQChr09g0264131 Helianthus annuus HOM05D006539 ORTHO05D008694 4.1e-99 365.5 279 65.9
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 7.0e-99 364.8 307 60.9
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 9.1e-99 364.4 282 64.5
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 1.2e-98 364.0 307 61.6
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 1.2e-98 364.0 339 59.6
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 1.6e-98 363.6 307 61.2
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 7.7e-98 361.3 350 56.0
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.7e-97 360.1 291 64.3
PSO478G0472 Papaver somniferum HOM05D006539 ORTHO05D008694 9.4e-96 354.4 272 64.3
BraA10t44417Z Brassica rapa HOM05D006539 ORTHO05D008694 1.6e-95 353.6 359 54.6
Nitab4.5_0008573g0030 Nicotiana tabacum HOM05D006539 ORTHO05D008694 4.8e-92 342.0 282 62.1
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.2e-90 337.4 261 62.5
AUR62034477 Chenopodium quinoa HOM05D006539 ORTHO05D008694 2.0e-90 336.7 426 46.2
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 2.2e-84 316.6 265 58.5
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 4.9e-84 315.5 294 56.5
MELO3C009837.2 Cucumis melo HOM05D006539 ORTHO05D008694 9.2e-83 311.2 329 55.3
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 1.5e-77 293.9 233 60.9
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 6.4e-76 288.5 258 54.3
Pp3c12_19160 Physcomitrium patens HOM05D006539 ORTHO05D008694 6.4e-76 288.5 237 55.7
SMO228G0204 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 4.6e-74 282.3 250 53.2
Ciclev10013894m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.3e-73 280.8 199 66.3
arahy.Tifrunner.gnm1.ann1.B86ER2 Arachis hypogaea HOM05D006539 ORTHO05D009236 1.2e-71 274.2 200 68.0
FAN09G1445 Fragaria x ananassa HOM05D006539 ORTHO05D008694 7.5e-69 265.0 352 46.9
Ca_06844_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 3.5e-66 256.1 215 66.0
CBR_g38172 Chara braunii HOM05D006539 ORTHO05D008694 8.6e-65 251.5 234 50.0
SMO116G0014 Selaginella moellendorffii HOM05D006539 ORTHO05D008694 1.6e-63 247.3 238 50.0
Dinv33805 Davidia involucrata HOM05D006539 ORTHO05D008694 1.5e-61 240.7 190 65.8
CSS0042966 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 1.9e-59 233.8 185 62.7
CSS0047989 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D008694 2.4e-59 233.4 185 62.7
Nitab4.5_0003216g0020 Nicotiana tabacum HOM05D006539 ORTHO05D008694 1.6e-58 230.7 277 48.0
HPP92_013415 Vanilla planifolia HOM05D006539 ORTHO05D008694 3.0e-57 226.5 189 61.4
AUR62044515 Chenopodium quinoa HOM05D006539 ORTHO05D008694 8.4e-52 208.4 114 81.6
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 8.7e-49 198.4 238 42.9
Pp3c3_25470 Physcomitrium patens HOM05D006539 ORTHO05D008694 1.6e-47 194.1 152 54.6
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 1.4e-46 191.0 238 39.5
FAN02G0136 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.8e-44 183.0 120 74.2
MCO16G092 Micromonas commoda HOM05D006539 ORTHO05D008694 1.3e-41 174.5 219 41.1
MD11G1144500 Malus domestica HOM05D006539 ORTHO05D008694 5.8e-29 132.5 131 51.1
CSS0026858 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 2.4e-27 127.1 142 52.8
CSS0050509 Camellia sinensis var. sinensis HOM05D006539 ORTHO05D043354 3.5e-26 123.2 152 49.3
MD07G1179900 Malus domestica HOM05D006539 ORTHO05D008694 2.3e-25 120.6 137 48.2
HPP92_013416 Vanilla planifolia HOM05D006539 ORTHO05D008694 1.9e-24 117.5 97 62.9
Ciclev10013255m.g Citrus clementina HOM05D006539 ORTHO05D008694 1.5e-21 107.8 69 78.3
QL02p073354 Quercus lobata HOM05D006539 ORTHO05D008694 1.7e-20 104.4 130 53.1
Cre09.g392950 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D044332 2.5e-16 90.5 208 31.2
QL02p073352 Quercus lobata HOM05D006539 ORTHO05D008694 6.9e-14 82.4 71 63.4
MD07G1180000 Malus domestica HOM05D006539 ORTHO05D248072 2.9e-12 77.0 104 41.3
Pp3c22_4480 Physcomitrium patens HOM05D006695 ORTHO05D008239 3.6e-10 70.1 219 26.9
Glyma.17G020700 Glycine max HOM05D006695 ORTHO05D008239 2.3e-09 67.4 142 30.3
Migut.N00136 Erythranthe guttata HOM05D006695 ORTHO05D008239 1.1e-08 65.1 150 28.7
VMungo1215G2645 Vigna mungo HOM05D006695 ORTHO05D008239 1.1e-08 65.1 142 30.3
Cre05.g238950 Chlamydomonas reinhardtii HOM05D006695 ORTHO05D008239 1.9e-08 64.3 133 30.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 1.9e-08 64.3 142 29.6
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 3.3e-08 63.5 142 28.9
Eucgr.H02435 Eucalyptus grandis HOM05D007191 ORTHO05D009370 4.3e-08 63.2 173 31.8
SMO347G0043 Selaginella moellendorffii HOM05D006695 ORTHO05D008239 4.3e-08 63.2 142 30.3
MCO05G154 Micromonas commoda HOM05D006539 ORTHO05D044332 5.7e-08 62.8 218 26.6
Prupe.1G146500 Prunus persica HOM05D006695 ORTHO05D008239 7.4e-08 62.4 141 31.2
SGA_v2.0_scaffold89G27581 Striga asiatica HOM05D006695 ORTHO05D008239 7.4e-08 62.4 146 30.1
Phvul.003G098300 Phaseolus vulgaris HOM05D006695 ORTHO05D008239 9.7e-08 62.0 142 29.6
MD13G1177300 Malus domestica HOM05D006695 ORTHO05D008239 1.7e-07 61.2 194 26.3
Sabra08G0162200 Salix brachista HOM05D006695 ORTHO05D008239 3.7e-07 60.1 142 29.6
AagrBONN_evm.TU.Sc2ySwM_228.600 Anthoceros agrestis HOM05D006695 ORTHO05D008239 4.8e-07 59.7 142 30.3
Lalb_Chr12g0196371 Lupinus albus HOM05D006695 ORTHO05D008239 4.8e-07 59.7 143 31.5
SEGI_18217 Sequoiadendron giganteum HOM05D006695 ORTHO05D008239 6.3e-07 59.3 142 26.1
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 1.1e-06 58.5 169 30.2
Peaxi162Scf00085g00523 Petunia axillaris HOM05D007191 ORTHO05D009370 1.1e-06 58.5 150 32.0
Mapoly0001s0064 Marchantia polymorpha HOM05D006695 ORTHO05D008239 1.4e-06 58.2 155 27.1
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 1.4e-06 58.2 166 24.1
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 6.9e-06 55.8 142 30.3
MSTRG.23388 Avicennia marina HOM05D007191 ORTHO05D009370 9.1e-06 55.5 155 29.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 9.1e-06 55.5 214 22.9


User provided reference genes

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