Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 7.9e-191 670.2 330 100.0
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 3.2e-184 648.3 330 95.8
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 2.1e-183 645.6 332 96.7
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 2.1e-183 645.6 330 95.2
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 5.2e-174 614.4 329 92.1
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 6.7e-174 614.0 329 92.1
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 3.3e-173 611.7 328 91.8
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.1e-171 606.7 325 92.3
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 2.2e-169 599.0 327 89.3
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 2.2e-169 599.0 327 89.3
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 3.7e-164 581.6 322 87.9
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 4.1e-163 578.2 328 85.1
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 7.0e-163 577.4 325 86.5
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 7.0e-163 577.4 327 86.2
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 2.7e-162 575.5 325 87.7
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 6.6e-161 570.9 324 86.4
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 3.3e-160 568.5 322 85.7
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 5.5e-160 567.8 324 86.1
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.5e-160 567.8 323 84.8
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 1.6e-159 566.2 327 83.5
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 4.7e-159 564.7 321 85.4
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 4.7e-159 564.7 322 85.4
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 6.1e-159 564.3 324 84.9
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 6.1e-159 564.3 330 84.2
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 8.0e-159 563.9 330 83.9
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 8.0e-159 563.9 330 83.9
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.0e-158 563.5 330 83.9
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 4.0e-158 561.6 325 84.0
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 5.2e-158 561.2 317 86.1
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 8.9e-158 560.5 317 86.1
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 2.0e-157 559.3 319 84.6
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-157 558.9 330 83.3
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 3.4e-157 558.5 324 84.6
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 5.7e-157 557.8 317 85.8
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 5.7e-157 557.8 317 85.5
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 7.5e-157 557.4 322 83.2
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 2.8e-156 555.4 322 83.2
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 3.7e-156 555.1 317 83.9
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 1.4e-155 553.1 326 82.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 1.8e-155 552.7 324 80.9
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 2.4e-155 552.4 325 80.9
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 5.4e-155 551.2 319 83.4
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 7.0e-155 550.8 324 84.0
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 9.2e-155 550.4 326 81.9
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.2e-154 550.1 326 81.9
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 2.7e-154 548.9 322 82.6
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 3.5e-154 548.5 322 83.2
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.9e-154 547.7 325 82.5
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 1.7e-153 546.2 291 92.1
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 5.0e-153 544.7 323 81.4
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 6.6e-153 544.3 325 80.0
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 8.6e-153 543.9 316 83.5
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.1e-152 543.5 327 81.0
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.5e-152 543.1 318 82.4
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 3.3e-152 542.0 321 80.4
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 3.3e-152 542.0 322 82.6
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 5.6e-152 541.2 322 82.0
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 5.6e-152 541.2 322 82.6
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 7.3e-152 540.8 326 80.7
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 9.5e-152 540.4 350 76.3
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 9.5e-152 540.4 321 81.0
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 4.7e-151 538.1 314 82.5
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 6.1e-151 537.7 324 80.2
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 3.1e-150 535.4 324 80.9
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 9.8e-149 530.4 326 79.4
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 1.3e-148 530.0 325 78.2
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 2.2e-148 529.3 325 78.2
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.4e-147 526.6 327 77.1
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.4e-147 526.6 329 79.0
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 1.9e-147 526.2 330 77.9
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 1.2e-146 523.5 324 77.8
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 3.5e-146 521.9 321 78.5
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 4.6e-146 521.5 320 80.6
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 6.0e-146 521.2 325 77.5
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 2.3e-145 519.2 289 88.2
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 1.9e-144 516.2 324 77.8
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 7.3e-144 514.2 321 78.5
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 7.3e-144 514.2 329 76.6
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.6e-143 513.1 329 76.3
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 2.1e-143 512.7 323 77.7
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 2.1e-143 512.7 323 75.2
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 2.8e-143 512.3 330 76.4
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 6.2e-143 511.1 322 77.0
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 6.2e-143 511.1 322 77.0
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 1.1e-142 510.4 322 77.6
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 1.4e-142 510.0 324 75.0
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 2.3e-142 509.2 323 77.7
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 3.1e-142 508.8 322 76.7
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 2.0e-141 506.1 319 77.1
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.9e-139 499.6 299 82.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 1.0e-137 493.8 289 82.7
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 5.1e-137 491.5 327 73.4
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 3.3e-136 488.8 322 75.2
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 5.6e-136 488.0 290 81.7
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 9.5e-136 487.3 326 75.8
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 2.1e-135 486.1 322 73.9
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 1.5e-133 479.9 351 67.2
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 5.8e-133 478.0 262 87.0
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.7e-132 476.5 258 88.4
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 8.3e-132 474.2 258 88.0
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 3.0e-129 465.7 319 75.9
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 6.2e-127 458.0 289 77.9
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 8.9e-126 454.1 342 69.0
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 1.5e-125 453.4 327 70.0
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 2.6e-125 452.6 257 84.0
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 4.8e-119 431.8 272 78.7
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 1.5e-117 426.8 256 81.6
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 1.6e-111 406.8 225 86.7
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 3.1e-110 402.5 230 86.5
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 5.6e-104 381.7 325 58.5
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 7.4e-104 381.3 325 59.7
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 5.8e-101 371.7 327 58.1
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 7.9e-90 334.7 281 66.2
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 5.0e-84 315.5 207 76.8
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 4.6e-82 308.9 305 54.1
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.3e-76 290.8 206 66.5
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.5e-75 286.6 174 80.5
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.6e-72 276.6 150 89.3
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 7.0e-62 241.9 215 62.3
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 9.1e-62 241.5 207 59.4
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 6.5e-52 208.8 347 37.2
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.3e-49 200.3 315 42.5
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 1.5e-48 197.6 177 59.3
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.7e-47 193.0 238 45.4
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 4.1e-46 189.5 409 34.2
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 3.4e-40 169.9 114 73.7
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.3e-39 167.9 231 49.8
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 3.5e-37 159.8 335 36.4
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 1.8e-33 147.5 107 67.3
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 8.9e-25 118.6 250 37.2
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.5e-19 101.3 57 87.7
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 5.8e-16 89.4 45 88.9
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 5.8e-16 89.4 98 50.0
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 3.9e-12 76.6 55 69.1
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 1.9e-11 74.3 78 52.6
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 1.5e-08 64.7 30 86.7
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 8.4e-07 58.9 39 76.9


User provided reference genes

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