Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 0.0e+00 1124.8 667 100.0
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.4e-298 1029.2 669 93.0
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 1.1e-276 956.4 668 88.3
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.8e-275 951.8 668 88.8
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 5.8e-233 811.2 522 84.5
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 2.2e-232 809.3 517 81.2
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 1.3e-221 773.5 523 80.9
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 5.7e-220 768.1 518 81.5
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 1.6e-219 766.5 703 74.4
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 6.9e-218 761.1 697 73.6
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.1e-215 753.8 502 81.7
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 8.2e-211 737.6 451 83.6
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 1.8e-210 736.5 519 71.9
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.2e-209 733.8 517 75.6
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 4.5e-209 731.9 517 74.9
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 3.6e-206 722.2 767 62.2
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 4.6e-206 721.8 518 73.9
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 8.8e-205 717.6 516 73.4
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.2e-203 713.0 520 72.7
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 4.8e-203 711.8 721 62.7
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 8.2e-203 711.1 523 71.9
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 3.4e-201 705.7 451 82.7
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 3.4e-201 705.7 714 64.1
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.3e-200 703.7 708 63.7
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.4e-199 700.3 708 63.3
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.9e-199 699.9 416 86.1
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 2.1e-198 696.4 518 70.8
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 3.6e-198 695.7 514 73.0
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 4.7e-198 695.3 516 71.7
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 4.7e-198 695.3 517 72.1
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 4.7e-198 695.3 520 72.5
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 2.3e-197 693.0 682 66.4
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.1e-197 691.8 511 72.0
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 8.8e-197 691.0 512 72.1
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-196 689.9 519 71.1
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.6e-196 689.5 703 62.3
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 4.4e-196 688.7 514 71.6
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 4.4e-196 688.7 519 71.3
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 5.7e-196 688.3 519 71.1
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.7e-195 686.8 524 72.1
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-195 686.8 708 62.7
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.7e-195 685.6 688 64.4
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.0e-193 679.9 514 70.6
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.9e-191 673.3 520 67.7
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.2e-190 670.6 534 68.5
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.1e-190 669.8 514 68.1
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 8.0e-190 667.9 516 70.3
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 1.8e-189 666.8 526 69.6
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.3e-189 666.4 511 70.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 3.0e-189 666.0 518 69.5
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.1e-188 664.1 518 69.5
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.5e-188 663.7 512 70.1
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 7.5e-188 661.4 521 69.7
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 7.5e-188 661.4 507 71.0
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 2.8e-187 659.4 520 70.4
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 2.0e-185 653.3 466 73.6
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 3.5e-185 652.5 520 68.7
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 1.7e-184 650.2 515 70.5
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.6e-182 643.7 511 66.1
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 1.0e-181 641.0 528 66.1
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 5.4e-178 628.6 520 66.0
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.6e-177 627.1 421 74.6
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.7e-177 626.3 551 64.8
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 4.5e-177 625.5 522 66.7
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 9.4e-175 617.8 521 66.4
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 1.6e-174 617.1 506 67.0
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 6.1e-174 615.1 505 65.9
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.8e-173 613.6 479 68.1
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 6.8e-173 611.7 519 65.1
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 1.2e-172 610.9 483 68.5
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 9.8e-172 607.8 516 63.8
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 6.3e-171 605.1 510 67.3
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 3.1e-170 602.8 533 63.6
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 3.5e-169 599.4 522 65.1
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 7.7e-169 598.2 526 63.7
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 1.7e-168 597.0 523 63.3
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 3.8e-168 595.9 542 62.7
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 1.1e-167 594.3 520 64.8
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 1.1e-167 594.3 494 66.4
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-166 590.5 467 67.5
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.8e-166 589.7 524 60.7
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 3.6e-166 589.3 444 67.6
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 1.0e-165 587.8 523 62.0
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 5.2e-165 585.5 517 60.5
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 5.2e-165 585.5 423 70.2
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 1.3e-163 580.9 718 56.0
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 3.7e-163 579.3 453 68.2
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 3.2e-162 576.2 492 63.4
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 5.4e-162 575.5 518 58.5
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 2.7e-161 573.2 478 66.5
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.3e-160 570.1 466 65.7
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.0e-160 569.7 393 73.5
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 1.1e-159 567.8 509 62.7
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 7.3e-159 565.1 530 59.4
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 8.3e-155 551.6 514 58.9
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.9e-154 550.4 516 59.5
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 9.2e-154 548.1 433 65.4
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 9.2e-154 548.1 490 60.8
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 2.7e-153 546.6 516 59.7
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 6.0e-153 545.4 430 66.3
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 2.1e-150 537.0 378 70.6
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 3.1e-149 533.1 520 60.0
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 4.4e-148 529.3 444 62.8
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 4.1e-146 522.7 450 62.2
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 9.2e-146 521.5 482 59.8
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 1.0e-144 518.1 378 74.6
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 1.2e-140 504.6 521 57.2
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 5.8e-140 502.3 451 59.9
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 3.6e-134 483.0 422 61.4
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 5.4e-130 469.2 325 71.1
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 6.0e-129 465.7 398 62.3
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 3.3e-119 433.3 348 69.0
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 2.8e-118 430.3 332 65.4
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 1.0e-112 411.8 425 52.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 1.1e-109 401.7 349 61.6
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 3.4e-108 396.7 351 62.1
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.6e-105 387.9 422 50.7
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.0e-104 385.2 355 56.3
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 1.1e-98 365.2 414 49.0
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 7.9e-97 359.0 368 54.3
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 4.1e-93 346.7 494 47.6
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 5.5e-90 336.3 224 76.3
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 2.0e-84 317.8 311 60.8
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 9.4e-82 308.9 259 68.3
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 1.3e-78 298.5 370 46.2
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 1.8e-77 294.7 496 40.3
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 2.2e-75 287.7 352 49.7
Cpa.g.sc109.3 Carica papaya HOM05D005013 ORTHO05D006005 2.5e-74 284.3 210 69.0
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 8.0e-73 279.3 189 75.7
HPP92_015185 Vanilla planifolia HOM05D005013 ORTHO05D006005 1.0e-51 209.1 192 57.3
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.6e-47 194.5 502 30.7
Oeu023599.1 Olea europaea HOM05D005013 ORTHO05D006005 1.6e-44 185.3 168 59.5
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 8.6e-43 179.5 203 49.8
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 4.0e-40 170.6 185 60.0
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 6.6e-35 153.3 97 78.4
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.5e-34 152.1 97 78.4
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 3.9e-27 127.5 94 63.8
Nn2g13410 Nelumbo nucifera HOM05D005013 ORTHO05D006005 1.4e-24 119.0 120 59.2
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 2.3e-24 118.2 135 50.4
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 1.5e-23 115.5 353 27.5
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 1.3e-22 112.5 234 33.8
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 4.9e-22 110.5 128 60.2
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.2e-21 107.8 87 63.2
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 1.2e-15 89.4 126 55.6
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 1.7e-14 85.5 162 37.7
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 8.4e-14 83.2 164 39.6
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 9.3e-13 79.7 116 42.2
vmacro04324 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 9.3e-13 79.7 123 40.7
CAN.G1143.11 Capsicum annuum HOM05D005013 ORTHO05D115532 2.8e-09 68.2 53 62.3
CAN.G1143.9 Capsicum annuum HOM05D000602 ORTHO05D001147 2.8e-09 68.2 126 37.3
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 5.3e-08 63.9 64 56.2
SEGI_39677 Sequoiadendron giganteum HOM05D050634 ORTHO05D006005 6.9e-08 63.5 91 45.1


User provided reference genes

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