Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.5e-65 252.7 125 100.0
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 4.4e-41 171.4 99 84.8
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 5.7e-41 171.0 99 84.8
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 5.7e-41 171.0 99 84.8
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 2.8e-40 168.7 99 83.8
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 3.7e-40 168.3 99 84.8
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 4.8e-40 167.9 99 84.8
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 9.1e-39 163.7 99 82.8
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 2.7e-38 162.2 99 80.8
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 4.5e-38 161.4 99 80.8
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.9e-38 161.0 99 81.8
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 5.9e-38 161.0 97 83.5
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 5.9e-38 161.0 97 83.5
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 6.5e-37 157.5 99 78.8
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 2.5e-36 155.6 99 78.8
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.2e-35 153.3 99 75.8
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 1.6e-35 152.9 99 77.8
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 2.8e-35 152.1 99 74.7
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 3.6e-35 151.8 99 76.8
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 3.6e-35 151.8 90 82.2
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 6.1e-35 151.0 99 72.7
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 8.0e-35 150.6 99 75.8
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 8.0e-35 150.6 99 75.8
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 1.0e-34 150.2 99 73.7
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.4e-34 149.8 99 75.8
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 1.4e-34 149.8 99 75.8
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.4e-34 149.8 99 75.8
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 1.4e-34 149.8 99 74.7
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.4e-34 149.8 99 74.7
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.4e-34 149.8 99 75.8
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 1.8e-34 149.4 99 74.7
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 6.8e-34 147.5 99 73.7
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 8.9e-34 147.1 99 74.7
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.2e-33 146.7 99 71.7
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.5e-33 146.4 100 72.0
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 1.5e-33 146.4 99 74.7
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 1.5e-33 146.4 99 74.7
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 1.5e-33 146.4 101 72.3
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 2.0e-33 146.0 99 71.7
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 3.4e-33 145.2 99 71.7
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 3.4e-33 145.2 99 71.7
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.4e-33 144.8 99 70.7
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 5.7e-33 144.4 99 71.7
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 1.3e-32 143.3 99 73.7
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.7e-32 142.9 99 69.7
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 3.7e-32 141.7 99 70.7
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 3.7e-32 141.7 98 73.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 6.3e-32 141.0 94 72.3
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 1.4e-31 139.8 95 68.4
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 1.4e-31 139.8 100 66.0
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 1.4e-31 139.8 97 72.2
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.4e-31 139.8 97 69.1
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 1.8e-31 139.4 95 72.6
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.8e-31 139.4 99 66.7
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.8e-31 139.4 99 67.7
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.4e-31 139.0 99 67.7
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 2.4e-31 139.0 99 70.7
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 3.1e-31 138.7 98 71.4
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 3.1e-31 138.7 99 67.7
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 4.1e-31 138.3 99 71.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 5.4e-31 137.9 99 69.7
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 7.0e-31 137.5 99 68.7
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 7.0e-31 137.5 99 66.7
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 9.2e-31 137.1 117 63.2
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 9.2e-31 137.1 99 65.7
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 9.2e-31 137.1 99 67.7
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 2.7e-30 135.6 99 67.7
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 2.7e-30 135.6 99 66.7
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 2.7e-30 135.6 117 62.4
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 3.5e-30 135.2 99 66.7
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 4.5e-30 134.8 99 67.7
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 4.5e-30 134.8 99 67.7
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 5.9e-30 134.4 106 63.2
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 5.9e-30 134.4 99 65.7
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 7.8e-30 134.0 99 65.7
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.0e-29 133.7 100 63.0
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.0e-29 133.7 100 63.0
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.0e-29 133.7 99 64.6
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 1.7e-29 132.9 100 63.0
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.7e-29 132.9 100 63.0
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 1.7e-29 132.9 100 63.0
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.3e-29 132.5 99 64.6
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 2.9e-29 132.1 99 66.7
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 5.0e-29 131.3 99 66.7
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.1e-28 130.2 99 62.6
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 1.1e-28 130.2 99 64.6
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.1e-28 130.2 99 63.6
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.5e-28 129.8 97 63.9
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 1.9e-28 129.4 99 61.6
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.9e-28 129.4 99 65.7
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.5e-28 129.0 99 62.6
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 3.3e-28 128.6 95 64.2
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 4.3e-28 128.3 99 62.6
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 4.3e-28 128.3 87 73.6
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 4.3e-28 128.3 99 62.6
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 5.6e-28 127.9 71 85.9
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 5.6e-28 127.9 99 63.6
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 9.5e-28 127.1 99 67.7
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.2e-27 126.7 90 67.8
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.8e-27 125.6 136 54.4
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.8e-27 125.6 136 54.4
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 4.7e-27 124.8 137 54.0
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.0e-26 122.1 99 62.6
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 2.6e-25 119.0 99 62.6
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 8.3e-24 114.0 100 56.0
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 2.4e-23 112.5 95 57.9
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.2e-22 110.2 69 76.8
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 1.0e-21 107.1 69 75.4
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 3.9e-21 105.1 99 51.5
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.6e-19 99.8 96 56.2
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.1e-18 97.1 92 53.3
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.5e-17 93.2 101 44.6
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.4e-17 92.0 94 48.9
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 8.3e-16 87.4 106 50.0
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 4.6e-14 81.6 76 55.3
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 3.0e-13 79.0 95 40.0
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 8.6e-13 77.4 72 52.8
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 3.6e-11 72.0 44 72.7
Psat1g126080 Pisum sativum HOM05D004772 ORTHO05D032275 4.7e-11 71.6 72 55.6
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 7.5e-09 64.3 45 62.2


User provided reference genes

Program Settings