Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 2.7e-67 258.8 159 100.0
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 8.3e-61 237.3 159 92.5
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 3.8e-58 228.4 159 90.6
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.1e-57 226.9 130 92.3
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 3.3e-57 225.3 128 93.8
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 3.3e-57 225.3 129 90.7
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 4.2e-57 224.9 159 87.4
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 2.3e-55 219.2 130 88.5
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 3.0e-55 218.8 129 89.9
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 1.2e-54 216.9 159 86.2
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 7.5e-54 214.2 131 86.3
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 5.4e-52 208.0 130 86.2
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 7.0e-52 207.6 153 86.3
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 6.6e-50 201.1 130 83.1
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.3e-49 198.7 129 84.5
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 3.3e-49 198.7 129 84.5
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 3.3e-49 198.7 131 81.7
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 4.3e-49 198.4 128 84.4
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 7.3e-49 197.6 157 82.2
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.3e-49 197.6 121 87.6
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 7.3e-49 197.6 159 80.5
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 1.2e-48 196.8 155 76.1
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.6e-48 196.4 121 87.6
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 2.1e-48 196.1 125 83.2
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.1e-48 196.1 121 86.8
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.1e-48 196.1 159 79.2
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 4.7e-48 194.9 155 75.5
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 6.2e-48 194.5 130 83.1
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 6.2e-48 194.5 130 83.1
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.4e-47 193.4 152 82.2
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 1.4e-47 193.4 155 76.1
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.4e-47 193.4 127 82.7
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.8e-47 193.0 157 81.5
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.8e-47 193.0 157 81.5
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.8e-47 193.0 127 82.7
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.8e-47 193.0 121 85.1
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 2.3e-47 192.6 121 85.1
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 4.0e-47 191.8 120 85.8
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 4.0e-47 191.8 124 82.3
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 5.2e-47 191.4 159 81.8
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 5.2e-47 191.4 119 85.7
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 6.8e-47 191.0 121 84.3
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 8.9e-47 190.7 141 77.3
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 8.9e-47 190.7 154 82.5
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 1.5e-46 189.9 132 79.5
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 2.0e-46 189.5 128 81.2
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 3.4e-46 188.7 127 80.3
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 5.8e-46 188.0 159 78.0
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 5.8e-46 188.0 124 80.6
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.8e-46 187.2 130 78.5
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 9.8e-46 187.2 130 78.5
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 9.8e-46 187.2 120 84.2
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 1.3e-45 186.8 152 80.9
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 1.7e-45 186.4 130 76.9
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 1.7e-45 186.4 124 79.8
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.2e-45 186.0 157 74.5
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.9e-45 185.7 159 74.8
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 2.9e-45 185.7 155 78.1
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 4.9e-45 184.9 126 78.6
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 4.9e-45 184.9 152 80.9
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.1e-44 183.7 120 81.7
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 3.2e-44 182.2 128 80.5
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 3.2e-44 182.2 152 78.9
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 7.0e-44 181.0 155 78.7
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 1.6e-43 179.9 157 76.4
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 1.6e-43 179.9 123 78.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 1.6e-43 179.9 123 78.0
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 2.0e-43 179.5 126 75.4
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 2.0e-43 179.5 123 78.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 2.7e-43 179.1 128 75.0
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 2.7e-43 179.1 157 71.3
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 4.6e-43 178.3 121 76.9
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 6.0e-43 177.9 130 73.1
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 6.0e-43 177.9 125 72.8
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 7.8e-43 177.6 162 74.1
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 2.3e-42 176.0 122 75.4
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 3.9e-42 175.3 121 76.9
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 6.6e-42 174.5 157 68.8
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 6.6e-42 174.5 124 73.4
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 8.6e-42 174.1 157 66.9
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 8.6e-42 174.1 123 78.9
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 1.5e-41 173.3 148 70.9
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.9e-41 172.9 152 75.0
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 1.9e-41 172.9 123 78.9
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 3.3e-41 172.2 121 73.6
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 3.3e-41 172.2 124 71.8
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 3.3e-41 172.2 121 73.6
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 3.3e-41 172.2 121 74.4
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 7.3e-41 171.0 130 70.8
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 7.3e-41 171.0 130 70.8
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 9.5e-41 170.6 121 73.6
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 9.5e-41 170.6 121 73.6
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 9.5e-41 170.6 121 73.6
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 9.5e-41 170.6 121 73.6
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.2e-40 170.2 121 74.4
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 1.6e-40 169.9 121 73.6
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 1.6e-40 169.9 154 68.8
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 2.1e-40 169.5 121 72.7
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 3.6e-40 168.7 116 76.7
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 6.2e-40 167.9 122 72.1
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 6.2e-40 167.9 122 72.1
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.4e-39 166.8 122 72.1
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.4e-39 166.8 122 72.1
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 5.2e-39 164.9 121 71.9
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 5.2e-39 164.9 119 69.7
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 1.5e-38 163.3 150 61.3
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 7.5e-38 161.0 224 56.7
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 1.3e-37 160.2 123 74.0
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 1.7e-37 159.8 243 53.1
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 2.2e-37 159.5 129 67.4
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 6.4e-37 157.9 121 70.2
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.4e-36 156.8 96 85.4
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.4e-36 156.8 158 72.2
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 1.4e-36 156.8 157 57.3
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 1.2e-35 153.7 129 65.9
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 7.8e-35 151.0 101 79.2
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 7.8e-35 151.0 124 61.3
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.3e-34 150.2 94 87.2
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 1.3e-34 150.2 120 64.2
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 1.7e-34 149.8 99 82.8
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 8.6e-34 147.5 102 78.4
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 1.6e-32 143.3 117 64.1
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 1.8e-31 139.8 123 61.0
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 3.1e-31 139.0 91 83.5
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 3.4e-30 135.6 125 54.4
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 1.7e-29 133.3 124 56.5
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 1.9e-28 129.8 83 84.3
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.6e-27 126.7 124 53.2
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 4.6e-27 125.2 129 52.7
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.1e-25 120.6 123 49.6
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 2.6e-22 109.4 94 63.8
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.2e-21 106.3 107 60.7
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 4.9e-21 105.1 94 59.6
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 4.9e-21 105.1 94 59.6
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 5.6e-17 91.7 95 60.0
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 2.8e-16 89.4 64 73.4
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 1.2e-11 73.9 52 65.4
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 1.0e-10 70.9 70 62.9
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 3.0e-10 69.3 83 55.4
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 3.0e-10 69.3 83 55.4
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.2e-06 57.4 46 65.2


User provided reference genes

Program Settings