Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G103600 Glycine max HOM05D004390 ORTHO05D004950 2.9e-45 184.9 94 100.0
Glyma.05G146700 Glycine max HOM05D004390 ORTHO05D004950 1.6e-43 179.1 94 96.8
Lj4g0026719 Lotus japonicus HOM05D004390 ORTHO05D004950 6.9e-39 163.7 94 86.2
Phvul.002G174400 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 9.9e-38 159.8 94 86.2
Phvul.001G260900 Phaseolus vulgaris HOM05D004390 ORTHO05D004950 4.9e-37 157.5 94 83.0
arahy.Tifrunner.gnm1.ann1.FA6GLZ Arachis hypogaea HOM05D004390 ORTHO05D004950 1.9e-36 155.6 94 81.9
Ca_18042_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 9.3e-36 153.3 94 81.9
Glyma.11G249600 Glycine max HOM05D004390 ORTHO05D004950 2.7e-35 151.8 94 78.7
Glyma.18G007600 Glycine max HOM05D004390 ORTHO05D004950 2.7e-35 151.8 94 80.9
Psat5g095200 Pisum sativum HOM05D004390 ORTHO05D004950 4.6e-35 151.0 94 81.9
Psat4g014960 Pisum sativum HOM05D004390 ORTHO05D004950 6.0e-35 150.6 94 80.9
arahy.Tifrunner.gnm1.ann1.CM82MG Arachis hypogaea HOM05D004390 ORTHO05D004950 7.9e-35 150.2 94 79.8
TPR.G28271 Trifolium pratense HOM05D004390 ORTHO05D004950 1.0e-34 149.8 94 80.9
arahy.Tifrunner.gnm1.ann1.L53BL2 Arachis hypogaea HOM05D004390 ORTHO05D004950 1.8e-34 149.1 92 78.3
Medtr8g080380 Medicago truncatula HOM05D004390 ORTHO05D004950 3.0e-34 148.3 94 76.6
Ca_16468_v3 Cicer arietinum L. HOM05D004390 ORTHO05D004950 5.1e-34 147.5 93 78.5
Haze_10374 Corylus avellana HOM05D004390 ORTHO05D004950 1.1e-33 146.4 94 77.7
Medtr3g085510 Medicago truncatula HOM05D004390 ORTHO05D004950 1.1e-33 146.4 94 78.7
MELO3C011874.2 Cucumis melo HOM05D004390 ORTHO05D004950 1.5e-33 146.0 94 76.6
Duzib248G1577 Durio zibethinus HOM05D004390 ORTHO05D004950 2.5e-33 145.2 94 78.7
QL03p053718 Quercus lobata HOM05D004390 ORTHO05D004950 2.5e-33 145.2 93 76.3
Cfa009329 Carpinus fangiana HOM05D004390 ORTHO05D004950 9.6e-33 143.3 93 76.3
CsaV3_5G030350 Cucumis sativus L. HOM05D004390 ORTHO05D004950 9.6e-33 143.3 94 74.5
ECA233G0624 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.8e-32 141.7 94 72.3
ECA240G0924 Erigeron canadensis HOM05D004390 ORTHO05D004950 2.8e-32 141.7 94 72.3
Lsat_1_v5_gn_8_149361 Lactuca sativa HOM05D004390 ORTHO05D004950 3.7e-32 141.4 94 71.3
Prupe.1G228300 Prunus persica HOM05D004390 ORTHO05D004950 3.7e-32 141.4 94 73.4
ClCG11G013760 Citrullus lanatus HOM05D004390 ORTHO05D004950 4.8e-32 141.0 95 74.7
DCAR_007008 Daucus carota HOM05D004390 ORTHO05D004950 6.2e-32 140.6 92 75.0
TAR371G0820 Trochodendron aralioides HOM05D004390 ORTHO05D004950 6.2e-32 140.6 92 76.1
CiPaw.06G101400 Carya illinoinensis HOM05D004390 ORTHO05D004950 8.1e-32 140.2 92 76.1
Hma1.2p1_0065F.1_g035640 Hydrangea macrophylla HOM05D004390 ORTHO05D004950 8.1e-32 140.2 94 76.6
CSS0004094 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.4e-31 139.4 94 74.5
CSS0048605 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 1.4e-31 139.4 94 74.5
Duzib251G0716 Durio zibethinus HOM05D004390 ORTHO05D004950 1.4e-31 139.4 94 75.5
FvH4_4g23930 Fragaria vesca HOM05D004390 ORTHO05D004950 1.8e-31 139.0 92 75.0
FAN12G2113 Fragaria x ananassa HOM05D006059 ORTHO05D004950 1.8e-31 139.0 92 75.0
GSVIVG01010448001 Vitis vinifera HOM05D004390 ORTHO05D004950 1.8e-31 139.0 93 74.2
CANSAT80G1060 Cannabis sativa HOM05D004390 ORTHO05D004950 2.4e-31 138.7 92 76.1
FAN07G0791 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.4e-31 138.7 92 75.0
FAN17G1207 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.4e-31 138.7 92 75.0
FAN22G0688 Fragaria x ananassa HOM05D004390 ORTHO05D004950 2.4e-31 138.7 92 75.0
Gohir.A12G148600 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.4e-31 138.7 93 73.1
Gorai.008G164900 Gossypium raimondii HOM05D004390 ORTHO05D004950 2.4e-31 138.7 93 74.2
Nitab4.5_0000379g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 2.4e-31 138.7 94 70.2
Dinv14827 Davidia involucrata HOM05D001171 ORTHO05D001872 4.0e-31 137.9 94 74.5
Thecc.02G210700 Theobroma cacao HOM05D004390 ORTHO05D004950 4.0e-31 137.9 94 75.5
Nitab4.5_0000367g0030 Nicotiana tabacum HOM05D004390 ORTHO05D004950 5.3e-31 137.5 94 69.1
TWI18G1082 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 5.3e-31 137.5 94 75.5
Aqoxy5G03398 Aquilegia oxysepala HOM05D004390 ORTHO05D004950 6.9e-31 137.1 89 74.2
Cpa.g.sc34.218 Carica papaya HOM05D004390 ORTHO05D004950 6.9e-31 137.1 94 73.4
Manes.12G012800 Manihot esculenta HOM05D004390 ORTHO05D004950 6.9e-31 137.1 94 75.5
QL12p006243 Quercus lobata HOM05D004390 ORTHO05D004950 6.9e-31 137.1 93 72.0
TWI36G1003 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 6.9e-31 137.1 94 75.5
Gohir.D12G152500 Gossypium hirsutum HOM05D004390 ORTHO05D004950 9.0e-31 136.7 94 73.4
Lj7E465T0 Lonicera japonica HOM05D004390 ORTHO05D004950 9.0e-31 136.7 94 72.3
Sed0024223 Sechium edule HOM05D004390 ORTHO05D004950 9.0e-31 136.7 94 71.3
EL10Ac6g13484 Beta vulgaris HOM05D004390 ORTHO05D004950 1.2e-30 136.3 93 71.0
Gohir.D01G154700 Gossypium hirsutum HOM05D004390 ORTHO05D004950 1.2e-30 136.3 94 71.3
Gorai.002G191500 Gossypium raimondii HOM05D004390 ORTHO05D004950 1.2e-30 136.3 94 71.3
Cc11_g00910 Coffea canephora HOM05D004390 ORTHO05D004950 2.0e-30 135.6 94 71.3
HanXRQChr08g0207731 Helianthus annuus HOM05D004390 ORTHO05D004950 2.0e-30 135.6 94 70.2
Atru.chr11.2308 Acer truncatum HOM05D004390 ORTHO05D004950 2.6e-30 135.2 94 73.4
Gohir.A01G155400 Gossypium hirsutum HOM05D004390 ORTHO05D004950 2.6e-30 135.2 94 71.3
TAR622G0138 Trochodendron aralioides HOM05D004390 ORTHO05D004950 3.4e-30 134.8 92 71.7
Carub.0007s0202 Capsella rubella HOM05D004390 ORTHO05D004950 5.8e-30 134.0 94 74.5
Eucgr.B03484 Eucalyptus grandis HOM05D004390 ORTHO05D004950 5.8e-30 134.0 95 73.7
Sp7g35820 Schrenkiella parvula HOM05D004390 ORTHO05D004950 5.8e-30 134.0 94 74.5
Nitab4.5_0002210g0100 Nicotiana tabacum HOM05D004390 ORTHO05D004950 7.6e-30 133.7 94 69.1
Sc11g0000500 Simmondsia chinensis HOM05D004390 ORTHO05D004950 7.6e-30 133.7 92 65.2
TAR629G1658 Trochodendron aralioides HOM05D004390 ORTHO05D004950 7.6e-30 133.7 92 71.7
Peaxi162Scf00128g01124 Petunia axillaris HOM05D004390 ORTHO05D004950 9.9e-30 133.3 93 69.9
AL7G12360 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 74.5
THA.LOC104824895 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.3e-29 132.9 94 72.3
Nitab4.5_0000592g0450 Nicotiana tabacum HOM05D004390 ORTHO05D004950 1.7e-29 132.5 94 69.1
THA.LOC104824892 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-29 132.5 94 71.3
THA.LOC104824896 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 1.7e-29 132.5 94 71.3
TWI75G0215 Tripterygium wilfordii HOM05D004390 ORTHO05D004950 1.7e-29 132.5 94 72.3
Actinidia20702 Actinidia chinensis HOM05D004390 ORTHO05D004950 2.2e-29 132.1 94 71.3
Nn3g16498 Nelumbo nucifera HOM05D004390 ORTHO05D004950 2.2e-29 132.1 93 71.0
Potri.010G059300 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.2e-29 132.1 94 70.2
BcaNung00935 Brassica carinata HOM05D004390 ORTHO05D004950 2.9e-29 131.7 94 73.4
AUR62024125 Chenopodium quinoa HOM05D004390 ORTHO05D004950 2.9e-29 131.7 82 75.6
Potri.008G175775 Populus trichocarpa HOM05D004390 ORTHO05D004950 2.9e-29 131.7 93 67.7
PGR102G2095 Punica granatum HOM05D004390 ORTHO05D004950 2.9e-29 131.7 97 71.1
Sabra08G0134000 Salix brachista HOM05D004390 ORTHO05D004950 2.9e-29 131.7 95 71.6
Cc09_g06290 Coffea canephora HOM05D015856 ORTHO05D004950 3.8e-29 131.3 93 69.9
COL.COLO4_20382 Corchorus olitorius HOM05D001171 ORTHO05D001872 3.8e-29 131.3 94 72.3
Nn4g22350 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.8e-29 131.3 93 68.8
THA.LOC109116235 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.8e-29 131.3 79 78.5
THA.LOC104824898 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 4.9e-29 131.0 94 71.3
Actinidia09657 Actinidia chinensis HOM05D004390 ORTHO05D004950 8.4e-29 130.2 92 68.5
Thhalv10027263m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 8.4e-29 130.2 94 72.3
Rhsim10G0039200 Rhododendron simsii HOM05D004390 ORTHO05D004950 8.4e-29 130.2 89 69.7
CARHR246620 Cardamine hirsuta HOM05D004390 ORTHO05D004950 1.9e-28 129.0 89 73.0
Migut.E00025 Erythranthe guttata HOM05D004390 ORTHO05D004950 1.9e-28 129.0 94 64.9
Actinidia08077 Actinidia chinensis HOM05D001171 ORTHO05D001872 2.5e-28 128.6 94 70.2
A01p00960 Brassica napus HOM05D004390 ORTHO05D004950 2.5e-28 128.6 94 72.3
BolC1t00106H Brassica oleracea HOM05D004390 ORTHO05D004950 2.5e-28 128.6 94 72.3
BraA01t00094Z Brassica rapa HOM05D004390 ORTHO05D004950 2.5e-28 128.6 94 72.3
CAN.G638.34 Capsicum annuum HOM05D004390 ORTHO05D004950 2.5e-28 128.6 94 69.1
Migut.K00715 Erythranthe guttata HOM05D004390 ORTHO05D004950 2.5e-28 128.6 94 67.0
Ah.02g130970 Amaranthus hybridus HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 67.7
ClCG09G006830 Citrullus lanatus HOM05D004390 ORTHO05D004950 3.2e-28 128.3 94 69.1
Hund25458 Selenicereus undatus HOM05D004390 ORTHO05D004950 3.2e-28 128.3 93 66.7
THA.LOC104824890 Tarenaya hassleriana HOM05D004390 ORTHO05D004950 3.2e-28 128.3 94 69.1
AT4G40042 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 4.2e-28 127.9 79 77.2
Lalb_Chr12g0206281 Lupinus albus HOM05D004390 ORTHO05D004950 7.1e-28 127.1 82 78.0
Ah.03g136230 Amaranthus hybridus HOM05D001171 ORTHO05D006126 9.3e-28 126.7 93 68.8
Duzib268G0993 Durio zibethinus HOM05D004390 ORTHO05D004950 1.2e-27 126.3 94 69.1
Sopen03g001750 Solanum pennellii HOM05D004390 ORTHO05D004950 1.2e-27 126.3 92 64.1
MBI11_g07456_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 2.1e-27 125.6 93 68.8
Lalb_Chr07g0187411 Lupinus albus HOM05D004390 ORTHO05D004950 3.5e-27 124.8 82 74.4
Oeu058917.1 Olea europaea HOM05D004390 ORTHO05D004950 6.0e-27 124.0 94 66.0
Lsat_1_v5_gn_3_29821 Lactuca sativa HOM05D004390 ORTHO05D004950 1.3e-26 122.9 92 64.1
Aa31LG7G14400 Aethionema arabicum HOM05D004390 ORTHO05D004950 5.1e-26 120.9 94 67.0
Os12g0438900 Oryza sativa ssp. japonica HOM05D004390 ORTHO05D004950 5.1e-26 120.9 94 64.9
Aa31LG7G15420 Aethionema arabicum HOM05D004390 ORTHO05D004950 6.7e-26 120.6 94 67.0
CARHR113610 Cardamine hirsuta HOM05D004390 ORTHO05D004950 6.7e-26 120.6 94 69.1
AT2G22425 Arabidopsis thaliana HOM05D004390 ORTHO05D004950 8.7e-26 120.2 94 67.0
DCAR_031195 Daucus carota HOM05D001171 ORTHO05D006126 8.7e-26 120.2 79 67.1
Thhalv10021836m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 8.7e-26 120.2 89 65.2
SpUn0131_0010 Schrenkiella parvula HOM05D004390 ORTHO05D004950 1.5e-25 119.4 94 67.0
Rhsim12G0027700 Rhododendron simsii HOM05D004390 ORTHO05D004950 1.9e-25 119.0 79 69.6
Aa31LG6G15170 Aethionema arabicum HOM05D004390 ORTHO05D004950 5.6e-25 117.5 94 64.9
CSS0024228 Camellia sinensis var. sinensis HOM05D004390 ORTHO05D004950 7.4e-25 117.1 94 66.0
Carub.0004s0159 Capsella rubella HOM05D004390 ORTHO05D004950 7.4e-25 117.1 94 67.0
AL4G11930 Arabidopsis lyrata HOM05D004390 ORTHO05D004950 9.6e-25 116.7 94 66.0
BraA09t41150Z Brassica rapa HOM05D004390 ORTHO05D004950 9.6e-25 116.7 94 64.9
Carub.0003s1416 Capsella rubella HOM05D004390 ORTHO05D004950 9.6e-25 116.7 89 59.6
PSO478G0183 Papaver somniferum HOM05D004390 ORTHO05D004950 9.6e-25 116.7 92 66.3
HPP92_024163 Vanilla planifolia HOM05D000064 ORTHO05D000281 9.6e-25 116.7 89 62.9
HPP92_024177 Vanilla planifolia HOM05D004390 ORTHO05D004950 9.6e-25 116.7 89 62.9
A09p57580 Brassica napus HOM05D004390 ORTHO05D004950 1.3e-24 116.3 94 63.8
PSO063G2970 Papaver somniferum HOM05D004390 ORTHO05D004950 1.3e-24 116.3 94 60.6
MBI13_g26147_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.6e-24 115.9 89 65.2
PSO017G1102 Papaver somniferum HOM05D004390 ORTHO05D004950 2.1e-24 115.5 92 65.2
Thhalv10000378m.g Eutrema salsugineum HOM05D004390 ORTHO05D004950 2.8e-24 115.2 94 66.0
C08p40770 Brassica napus HOM05D004390 ORTHO05D004950 3.7e-24 114.8 94 63.8
Zm00001eb052740 Zea mays HOM05D004390 ORTHO05D004950 4.8e-24 114.4 81 65.4
PSO782G4737 Papaver somniferum HOM05D004390 ORTHO05D004950 8.2e-24 113.6 94 58.5
Zm00001eb218300 Zea mays HOM05D004390 ORTHO05D004950 1.4e-23 112.8 94 61.7
BcaC07g41074 Brassica carinata HOM05D004390 ORTHO05D004950 3.1e-23 111.7 94 62.8
BolC8t51641H Brassica oleracea HOM05D004390 ORTHO05D004950 3.1e-23 111.7 94 62.8
BcaB08g35066 Brassica carinata HOM05D004390 ORTHO05D004950 5.3e-23 110.9 94 62.8
CARHR089330 Cardamine hirsuta HOM05D004390 ORTHO05D004950 5.3e-23 110.9 79 60.8
CiPaw.05G111600 Carya illinoinensis HOM05D004390 ORTHO05D004950 6.9e-23 110.5 80 72.5
RcHm_v2.0_Chr4g0430591 Rosa chinensis HOM05D004390 ORTHO05D004950 1.2e-22 109.8 81 69.1
MBI05_g44034_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.5e-22 109.4 93 62.4
SEGI_16803 Sequoiadendron giganteum HOM05D004390 ORTHO05D004950 1.5e-22 109.4 96 61.5
SMO364G0480 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 4.9e-21 104.4 69 68.1
ATR0561G166 Amborella trichopoda HOM05D004390 ORTHO05D004950 6.5e-21 104.0 95 55.8
MD13G1117200 Malus domestica HOM05D004390 ORTHO05D004950 1.4e-20 102.8 84 65.5
Solyc03g005740.3 Solanum lycopersicum HOM05D004390 ORTHO05D004950 1.4e-20 102.8 80 60.0
Pp3c4_12150 Physcomitrium patens HOM05D004390 ORTHO05D004950 7.1e-20 100.5 74 63.5
MBI07_g16243_MAGBIO Magnolia biondii HOM05D002351 ORTHO05D004950 7.9e-19 97.1 82 62.2
TPR.G10940 Trifolium pratense HOM05D004390 ORTHO05D004950 7.9e-19 97.1 64 76.6
ATR1098G064 Amborella trichopoda HOM05D004390 ORTHO05D004950 3.0e-18 95.1 96 55.2
Pp3c10_14440 Physcomitrium patens HOM05D004390 ORTHO05D004950 1.6e-16 89.4 74 55.4
Sp3g12740 Schrenkiella parvula HOM05D004390 ORTHO05D004950 6.3e-16 87.4 61 67.2
Mapoly0041s0086 Marchantia polymorpha HOM05D004390 ORTHO05D004950 8.2e-16 87.0 93 50.5
Manes.13G018500 Manihot esculenta HOM05D004390 ORTHO05D004950 2.6e-14 82.0 71 62.0
CBR_g48133 Chara braunii HOM05D004390 ORTHO05D004950 1.0e-13 80.1 69 52.2
MBI07_g34630_MAGBIO Magnolia biondii HOM05D004390 ORTHO05D004950 1.4e-12 76.3 69 49.3
Nn1g04852 Nelumbo nucifera HOM05D004390 ORTHO05D004950 3.2e-12 75.1 52 69.2
Nn4g24822 Nelumbo nucifera HOM05D002155 ORTHO05D004950 3.2e-12 75.1 52 69.2
PRCOL_00005433 Prasinoderma coloniale HOM05D004390 ORTHO05D004950 1.0e-10 70.1 71 45.1
SMO145G0172 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.4e-10 69.7 73 43.8
MCO16G111 Micromonas commoda HOM05D004390 ORTHO05D004950 1.8e-10 69.3 83 43.4
Lalb_Chr22g0358881 Lupinus albus HOM05D004390 ORTHO05D004950 4.3e-09 64.7 39 74.4
Pp3c3_460 Physcomitrium patens HOM05D004390 ORTHO05D004950 5.3e-07 57.8 73 35.6
SMO197G0059 Selaginella moellendorffii HOM05D004390 ORTHO05D004950 1.2e-06 56.6 69 42.0


User provided reference genes

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