Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G021300 Glycine max HOM05D002129 ORTHO05D002188 4.2e-274 948.0 703 100.0
Glyma.05G215000 Glycine max HOM05D002129 ORTHO05D002188 1.1e-208 730.7 730 75.2
VMungo0251G1783 Vigna mungo HOM05D002129 ORTHO05D002188 7.2e-125 452.2 652 53.5
Lalb_Chr05g0224251 Lupinus albus HOM05D002129 ORTHO05D002188 9.8e-122 441.8 742 47.4
Phvul.002G296200 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 1.7e-113 414.5 622 51.1
Medtr8g099265 Medicago truncatula HOM05D002129 ORTHO05D002188 1.7e-110 404.4 806 41.1
Lj4g0006933 Lotus japonicus HOM05D002129 ORTHO05D002188 1.6e-108 397.9 745 39.6
Ca_17496_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 6.8e-107 392.5 701 42.8
TPR.G3398 Trifolium pratense HOM05D002129 ORTHO05D002188 1.2e-106 391.7 758 39.4
arahy.Tifrunner.gnm1.ann1.X2XLI1 Arachis hypogaea HOM05D002129 ORTHO05D002188 1.2e-92 345.1 748 38.4
Psat7g027480 Pisum sativum HOM05D002129 ORTHO05D002188 8.9e-91 339.0 881 36.0
LjContig00312_ERROPOS870357g0010036 Lotus japonicus HOM05D002129 ORTHO05D002188 2.5e-85 320.9 750 40.8
arahy.Tifrunner.gnm1.ann1.CM611Z Arachis hypogaea HOM05D002129 ORTHO05D002188 1.8e-83 314.7 745 40.1
Lalb_Chr16g0376981 Lupinus albus HOM05D002129 ORTHO05D002188 2.9e-65 254.2 960 29.0
MD06G1102200 Malus domestica HOM05D002129 ORTHO05D002188 5.3e-51 206.8 814 28.9
TWI15G0725 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 3.4e-42 177.6 774 34.0
MD14G1121400 Malus domestica HOM05D002129 ORTHO05D002188 2.2e-41 174.9 857 29.2
QL02p031447 Quercus lobata HOM05D002129 ORTHO05D002188 9.4e-40 169.5 763 28.6
Atru.chr9.2043 Acer truncatum HOM05D002129 ORTHO05D002188 2.1e-39 168.3 402 31.1
Prupe.5G115200 Prunus persica HOM05D002129 ORTHO05D002188 3.6e-39 167.5 822 28.8
Ca_24520_v3 Cicer arietinum L. HOM05D002129 ORTHO05D002188 6.3e-36 156.8 719 29.9
Dinv38857 Davidia involucrata HOM05D002129 ORTHO05D002188 2.2e-33 148.3 723 25.3
Thecc.03G293100 Theobroma cacao HOM05D002129 ORTHO05D002188 8.5e-33 146.4 752 28.1
Potri.003G137300 Populus trichocarpa HOM05D002129 ORTHO05D002188 1.1e-32 146.0 792 25.3
RcHm_v2.0_Chr7g0195441 Rosa chinensis HOM05D002129 ORTHO05D002188 2.7e-31 141.4 924 22.4
FvH4_5g04071 Fragaria vesca HOM05D002129 ORTHO05D002188 7.9e-31 139.8 400 29.2
FAN18G4347 Fragaria x ananassa HOM05D002129 ORTHO05D002188 7.9e-31 139.8 400 29.2
PGSC0003DMG400004988 Solanum tuberosum HOM05D002129 ORTHO05D002188 3.0e-30 137.9 400 29.8
FAN18G1710 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.5e-29 135.6 400 28.8
FAN13G0971 Fragaria x ananassa HOM05D002129 ORTHO05D002188 2.0e-29 135.2 406 29.6
Cpa.g.sc122.43 Carica papaya HOM05D002129 ORTHO05D002188 2.6e-29 134.8 747 28.6
CAN.G26.3 Capsicum annuum HOM05D002129 ORTHO05D002188 1.7e-28 132.1 771 25.2
MELO3C016309.2 Cucumis melo HOM05D002129 ORTHO05D002188 2.8e-28 131.3 410 28.0
Sabra03G0098800 Salix brachista HOM05D002129 ORTHO05D002188 1.4e-27 129.0 768 24.9
Sopen12g028580 Solanum pennellii HOM05D002129 ORTHO05D002188 1.4e-27 129.0 782 23.4
CsaV3_4G006410 Cucumis sativus L. HOM05D002129 ORTHO05D002188 3.1e-27 127.9 715 23.4
QL12p009828 Quercus lobata HOM05D002129 ORTHO05D002188 2.6e-26 124.8 726 24.5
QL12p010595 Quercus lobata HOM05D002129 ORTHO05D002188 2.6e-26 124.8 726 24.5
TPR.G6696 Trifolium pratense HOM05D002129 ORTHO05D002188 5.9e-26 123.6 534 32.4
Phvul.002G163000 Phaseolus vulgaris HOM05D002129 ORTHO05D002188 7.7e-26 123.2 702 26.5
Duzib068G0910 Durio zibethinus HOM05D002129 ORTHO05D002188 1.7e-25 122.1 726 25.2
Cc08_g15770 Coffea canephora HOM05D002129 ORTHO05D002188 3.2e-24 117.9 760 23.2
Duzib084G0477 Durio zibethinus HOM05D002129 ORTHO05D002188 4.2e-24 117.5 744 25.7
Duzib205G1563 Durio zibethinus HOM05D002129 ORTHO05D002188 1.2e-23 115.9 398 30.2
vmacro11445 Vaccinium macrocarpon HOM05D001971 ORTHO05D003057 1.6e-23 115.5 398 28.1
PGR042G1587 Punica granatum HOM05D002129 ORTHO05D002188 8.0e-23 113.2 785 27.0
FAN08G2732 Fragaria x ananassa HOM05D002129 ORTHO05D002188 5.2e-22 110.5 680 23.5
Sabra01G0070100 Salix brachista HOM05D002129 ORTHO05D002188 2.6e-21 108.2 450 30.2
Lj8P210T83 Lonicera japonica HOM05D002129 ORTHO05D002188 1.3e-20 105.9 253 32.0
FAN04G1467 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.7e-20 104.4 698 23.2
Solyc12g056060.3 Solanum lycopersicum HOM05D002129 ORTHO05D002188 3.7e-20 104.4 782 22.6
Sopen08g004110 Solanum pennellii HOM05D002129 ORTHO05D002188 1.1e-19 102.8 401 28.2
Peaxi162Scf00102g00176 Petunia axillaris HOM05D002129 ORTHO05D002188 2.4e-19 101.7 405 25.9
PGSC0003DMG400005787 Solanum tuberosum HOM05D002129 ORTHO05D002188 3.1e-19 101.3 401 26.9
Solyc08g008260.2 Solanum lycopersicum HOM05D002129 ORTHO05D002188 4.1e-19 100.9 401 27.7
CSS0018198 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.0e-18 98.6 824 26.2
CSS0047098 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 2.0e-18 98.6 782 28.1
ClCG07G014890 Citrullus lanatus HOM05D002129 ORTHO05D002188 2.0e-18 98.6 685 22.3
Ciclev10024006m.g Citrus clementina HOM05D002129 ORTHO05D002188 2.0e-18 98.6 413 25.4
Psat0s4440g0080 Pisum sativum HOM05D002129 ORTHO05D002188 3.5e-18 97.8 249 34.5
CSS0027740 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 1.0e-17 96.3 807 28.9
Rhsim02G0241100 Rhododendron simsii HOM05D002129 ORTHO05D002188 1.0e-17 96.3 297 29.0
Dinv37551 Davidia involucrata HOM05D002129 ORTHO05D002188 5.0e-17 94.0 761 21.7
AT1G64320 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 6.5e-17 93.6 703 24.2
Sc01g0010120 Simmondsia chinensis HOM05D002129 ORTHO05D002188 1.5e-16 92.4 420 24.5
Nitab4.5_0002944g0210 Nicotiana tabacum HOM05D002129 ORTHO05D002188 1.9e-16 92.0 228 32.0
CANSAT21G0822 Cannabis sativa HOM05D002129 ORTHO05D002188 2.5e-16 91.7 697 23.0
Duzib205G0555 Durio zibethinus HOM05D002129 ORTHO05D002188 2.5e-16 91.7 216 31.0
Sed0023438 Sechium edule HOM05D002129 ORTHO05D002188 2.5e-16 91.7 705 22.3
CSS0006894 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 3.2e-16 91.3 436 25.5
Manes.01G046000 Manihot esculenta HOM05D002129 ORTHO05D002188 7.2e-16 90.1 782 24.7
Manes.01G045900 Manihot esculenta HOM05D002129 ORTHO05D002188 9.4e-16 89.7 450 22.7
AL2G10620 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.7e-15 88.2 684 23.5
Gohir.A02G102300 Gossypium hirsutum HOM05D002129 ORTHO05D002188 2.7e-15 88.2 684 23.7
Oeu042386.1 Olea europaea HOM05D002129 ORTHO05D002188 1.0e-14 86.3 431 24.1
MSTRG.11936 Avicennia marina HOM05D002129 ORTHO05D002188 1.4e-14 85.9 361 25.5
Dinv37550 Davidia involucrata HOM05D002129 ORTHO05D002188 1.4e-14 85.9 449 21.6
ECA246G1519 Erigeron canadensis HOM05D002129 ORTHO05D002188 1.4e-14 85.9 215 29.3
Ciclev10018618m.g Citrus clementina HOM05D002129 ORTHO05D002188 2.3e-14 85.1 451 28.2
unitig_748.g7418 Utricularia gibba HOM05D002129 ORTHO05D002188 2.3e-14 85.1 403 24.1
Cfa012842 Carpinus fangiana HOM05D002129 ORTHO05D002188 3.0e-14 84.7 444 30.9
AT5G41780 Arabidopsis thaliana HOM05D002129 ORTHO05D002188 4.0e-14 84.3 667 21.9
Gohir.D03G081800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 4.0e-14 84.3 684 23.4
Actinidia04211 Actinidia chinensis HOM05D002129 ORTHO05D002188 6.8e-14 83.6 334 26.6
Gorai.003G081800 Gossypium raimondii HOM05D002129 ORTHO05D002188 6.8e-14 83.6 684 23.0
Nitab4.5_0006656g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 6.8e-14 83.6 222 30.6
Carub.0002s0049 Capsella rubella HOM05D002129 ORTHO05D002188 8.8e-14 83.2 695 22.4
Migut.E01235 Erythranthe guttata HOM05D002129 ORTHO05D002188 2.0e-13 82.0 241 28.6
HanXRQChr10g0292651 Helianthus annuus HOM05D002129 ORTHO05D002188 2.0e-13 82.0 721 20.7
Gohir.A08G099784 Gossypium hirsutum HOM05D002129 ORTHO05D002188 3.4e-13 81.3 584 22.8
CARHR046640 Cardamine hirsuta HOM05D002129 ORTHO05D002188 1.3e-12 79.3 683 23.6
Haze_08667 Corylus avellana HOM05D002129 ORTHO05D002188 1.3e-12 79.3 450 30.0
HanXRQChr17g0535111 Helianthus annuus HOM05D002129 ORTHO05D002188 1.3e-12 79.3 248 27.8
Oeu061086.1 Olea europaea HOM05D002129 ORTHO05D002188 1.7e-12 79.0 800 21.1
BcaB02g07879 Brassica carinata HOM05D002129 ORTHO05D002188 2.2e-12 78.6 363 26.4
SGA_v2.0_scaffold173G39089 Striga asiatica HOM05D002129 ORTHO05D002188 3.7e-12 77.8 244 28.3
FAN08G2643 Fragaria x ananassa HOM05D002129 ORTHO05D002188 8.3e-12 76.6 435 22.1
FAN04G1700 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.4e-11 75.9 166 33.1
FAN04G3154 Fragaria x ananassa HOM05D002129 ORTHO05D002188 1.4e-11 75.9 166 33.1
MSTRG.1816 Avicennia marina HOM05D002129 ORTHO05D002188 2.4e-11 75.1 357 31.4
Migut.A00679 Erythranthe guttata HOM05D002129 ORTHO05D002188 3.1e-11 74.7 288 25.0
Oeu061087.1 Olea europaea HOM05D002129 ORTHO05D002188 3.1e-11 74.7 196 29.1
Cc08_g15780 Coffea canephora HOM05D002129 ORTHO05D002188 5.4e-11 73.9 205 27.8
Sp2g00440 Schrenkiella parvula HOM05D002129 ORTHO05D002188 7.0e-11 73.6 303 27.7
C09p17920 Brassica napus HOM05D002129 ORTHO05D002188 9.1e-11 73.2 226 29.6
BolC9t54689H Brassica oleracea HOM05D002129 ORTHO05D002188 9.1e-11 73.2 226 29.6
AUR62010808 Chenopodium quinoa HOM05D002129 ORTHO05D002188 1.2e-10 72.8 386 23.1
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 1.6e-10 72.4 470 24.0
A09p14800 Brassica napus HOM05D002129 ORTHO05D002188 2.0e-10 72.0 226 29.2
BraA09t37126Z Brassica rapa HOM05D002129 ORTHO05D002188 2.0e-10 72.0 226 29.2
CAN.G792.47 Capsicum annuum HOM05D002129 ORTHO05D002188 2.0e-10 72.0 405 25.2
Actinidia04212 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.7e-10 71.6 129 40.3
FAN18G4528 Fragaria x ananassa HOM05D002129 ORTHO05D002188 3.5e-10 71.2 435 21.6
A07p20910 Brassica napus HOM05D002129 ORTHO05D002188 4.5e-10 70.9 239 28.0
FvH4_5g04072 Fragaria vesca HOM05D002129 ORTHO05D002188 4.5e-10 70.9 435 21.8
BcaC08g44555 Brassica carinata HOM05D002129 ORTHO05D002188 5.9e-10 70.5 370 25.1
Oeu042385.1 Olea europaea HOM05D002129 ORTHO05D002188 5.9e-10 70.5 160 33.8
BolC6t37201H Brassica oleracea HOM05D002129 ORTHO05D002188 7.7e-10 70.1 370 25.1
FAN18G3989 Fragaria x ananassa HOM05D002129 ORTHO05D002188 7.7e-10 70.1 432 20.8
Rhsim07G0084000 Rhododendron simsii HOM05D002129 ORTHO05D002188 7.7e-10 70.1 349 21.5
Cpa.g.c43245 Carica papaya HOM05D002129 ORTHO05D002188 1.0e-09 69.7 203 26.6
COL.COLO4_21719 Corchorus olitorius HOM05D002129 ORTHO05D002188 1.0e-09 69.7 726 22.5
SalBow8G3978 Salvia bowleyana HOM05D002129 ORTHO05D002188 1.0e-09 69.7 321 25.9
Duzib068G1418 Durio zibethinus HOM05D002129 ORTHO05D002188 1.3e-09 69.3 202 32.2
Sed0025225 Sechium edule HOM05D002129 ORTHO05D002188 1.3e-09 69.3 433 22.9
THA.LOC104823609 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 1.3e-09 69.3 701 29.8
Thhalv10024082m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 2.3e-09 68.6 407 26.3
CARHR212790 Cardamine hirsuta HOM05D002129 ORTHO05D002188 2.9e-09 68.2 400 26.5
THA.LOC104809342 Tarenaya hassleriana HOM05D002129 ORTHO05D002188 3.8e-09 67.8 734 23.2
BcaB07g31454 Brassica carinata HOM05D002129 ORTHO05D002188 5.0e-09 67.4 226 28.3
CSS0045654 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.0e-09 67.4 382 22.3
Sabra03G0098900 Salix brachista HOM05D002129 ORTHO05D002188 5.0e-09 67.4 407 21.9
CiPaw.11G123900 Carya illinoinensis HOM05D002129 ORTHO05D002188 6.5e-09 67.0 449 26.9
Sed0022097 Sechium edule HOM05D002129 ORTHO05D002188 6.5e-09 67.0 449 20.9
Gohir.D08G132401 Gossypium hirsutum HOM05D002129 ORTHO05D002188 8.6e-09 66.6 599 26.5
Manes.02G012600 Manihot esculenta HOM05D002129 ORTHO05D002188 8.6e-09 66.6 132 32.6
EL10Ac5g12883 Beta vulgaris HOM05D002129 ORTHO05D002188 1.5e-08 65.9 389 24.7
BraA07t29778Z Brassica rapa HOM05D002129 ORTHO05D002188 1.5e-08 65.9 406 26.1
arahy.Tifrunner.gnm1.ann1.F3VNHJ Arachis hypogaea HOM05D002129 ORTHO05D002188 2.5e-08 65.1 141 33.3
arahy.Tifrunner.gnm1.ann1.P7UIV5 Arachis hypogaea HOM05D002129 ORTHO05D002188 3.2e-08 64.7 141 34.0
Actinidia27335 Actinidia chinensis HOM05D002129 ORTHO05D002188 4.2e-08 64.3 103 41.7
CSS0015477 Camellia sinensis var. sinensis HOM05D002129 ORTHO05D002188 5.5e-08 63.9 164 34.1
Potri.001G094200 Populus trichocarpa HOM05D002129 ORTHO05D002188 7.2e-08 63.5 450 22.7
TAR374G0929 Trochodendron aralioides HOM05D002129 ORTHO05D002188 9.5e-08 63.2 173 30.1
Thhalv10028203m.g Eutrema salsugineum HOM05D002129 ORTHO05D002188 1.2e-07 62.8 392 28.1
Lalb_Chr05g0224241 Lupinus albus HOM05D002129 ORTHO05D002188 1.2e-07 62.8 452 21.2
TPR.G3412 Trifolium pratense HOM05D002129 ORTHO05D002188 1.2e-07 62.8 48 54.2
Aqoxy5G04152 Aquilegia oxysepala HOM05D002129 ORTHO05D002188 1.6e-07 62.4 96 39.6
Actinidia01396 Actinidia chinensis HOM05D002129 ORTHO05D002188 2.1e-07 62.0 848 28.7
AL7G47480 Arabidopsis lyrata HOM05D002129 ORTHO05D002188 2.1e-07 62.0 672 22.5
Gorai.004G135400 Gossypium raimondii HOM05D002129 ORTHO05D002188 2.1e-07 62.0 621 25.0
arahy.Tifrunner.gnm1.ann1.Q3GPI2 Arachis hypogaea HOM05D002129 ORTHO05D002188 3.6e-07 61.2 46 56.5
Nitab4.5_0005112g0010 Nicotiana tabacum HOM05D002129 ORTHO05D002188 3.6e-07 61.2 809 20.3
CAN.G825.40 Capsicum annuum HOM05D002129 ORTHO05D002188 4.7e-07 60.8 135 29.6
Sc07g0009950 Simmondsia chinensis HOM05D002129 ORTHO05D002188 4.7e-07 60.8 393 23.7
Glyma.05G215100 Glycine max HOM05D002129 ORTHO05D002188 6.1e-07 60.5 51 51.0
Lj4g0008940 Lotus japonicus HOM05D002129 ORTHO05D002188 8.0e-07 60.1 173 33.5
VMungo1215G3208 Vigna mungo HOM05D002129 ORTHO05D002188 8.0e-07 60.1 366 26.0
Gorai.003G081700 Gossypium raimondii HOM05D002129 ORTHO05D002188 1.0e-06 59.7 50 52.0
Manes.10G064266 Manihot esculenta HOM05D002129 ORTHO05D002188 1.0e-06 59.7 218 25.7
Ah.12g052300 Amaranthus hybridus HOM05D002129 ORTHO05D002188 1.4e-06 59.3 303 25.7
COL.COLO4_21718 Corchorus olitorius HOM05D002129 ORTHO05D002188 1.4e-06 59.3 50 50.0
Duzib084G0891 Durio zibethinus HOM05D002129 ORTHO05D002188 1.4e-06 59.3 49 51.0
Gohir.A09G190800 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.8e-06 58.9 50 52.0
Gohir.D09G185400 Gossypium hirsutum HOM05D002129 ORTHO05D002188 1.8e-06 58.9 50 52.0
TWI60G1278 Tripterygium wilfordii HOM05D002129 ORTHO05D002188 2.3e-06 58.5 425 22.6
unitig_52.g17439 Utricularia gibba HOM05D002129 ORTHO05D002188 2.3e-06 58.5 436 22.0
Medtr8g099290 Medicago truncatula HOM05D002129 ORTHO05D002188 4.0e-06 57.8 452 23.5
Gorai.006G207900 Gossypium raimondii HOM05D002129 ORTHO05D002188 5.2e-06 57.4 50 50.0
Carub.0007s3360 Capsella rubella HOM05D002129 ORTHO05D002188 6.8e-06 57.0 397 26.4
Thecc.03G293200 Theobroma cacao HOM05D002129 ORTHO05D002188 6.8e-06 57.0 131 29.0
BcaC04g22558 Brassica carinata HOM05D002129 ORTHO05D002188 8.8e-06 56.6 420 25.0


User provided reference genes

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