Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 0.0e+00 1240.3 691 100.0
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 6.9e-237 824.3 691 65.7
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 2.8e-222 775.8 652 70.9
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 5.1e-208 728.4 739 60.1
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.8e-189 666.8 762 58.5
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 7.7e-188 661.4 684 55.7
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 7.7e-188 661.4 684 55.7
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 2.0e-183 646.7 733 52.5
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 3.8e-171 605.9 738 54.2
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 8.9e-168 594.7 729 56.7
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 3.7e-166 589.3 759 55.6
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 9.9e-143 511.5 704 44.3
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 8.4e-142 508.4 709 43.9
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 7.1e-141 505.4 709 44.4
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.6e-140 504.2 698 44.8
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 3.5e-140 503.1 732 43.3
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 4.3e-138 496.1 661 44.8
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 7.3e-138 495.4 703 45.0
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 4.0e-136 489.6 695 43.2
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 4.0e-136 489.6 670 44.3
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 4.0e-136 489.6 661 44.5
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 2.0e-135 487.3 686 44.6
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 2.6e-135 486.9 645 46.2
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 3.4e-135 486.5 698 45.8
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 5.8e-135 485.7 617 47.3
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 7.1e-133 478.8 617 47.2
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 4.6e-132 476.1 714 43.4
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 1.5e-130 471.1 718 43.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.5e-130 470.3 701 43.4
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.3e-130 468.8 714 41.9
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 1.3e-129 468.0 714 41.9
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 2.8e-129 466.8 696 43.7
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 8.1e-129 465.3 672 42.7
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 9.0e-128 461.8 611 45.3
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.0e-128 461.8 714 42.0
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 1.1e-125 454.9 683 41.9
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 1.4e-125 454.5 714 41.0
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 4.2e-125 453.0 676 41.0
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.2e-124 451.4 667 49.9
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 1.5e-122 444.5 667 43.0
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 1.5e-122 444.5 674 42.7
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 3.3e-122 443.4 715 40.7
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 8.1e-121 438.7 651 47.2
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.1e-120 438.3 629 48.6
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 9.0e-120 435.3 674 41.7
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 2.6e-119 433.7 626 44.2
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 3.4e-119 433.3 619 44.7
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 5.8e-119 432.6 593 44.2
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 6.4e-118 429.1 650 41.1
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 8.4e-118 428.7 661 48.6
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 8.4e-118 428.7 662 41.2
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.9e-117 427.6 662 45.5
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 2.4e-117 427.2 654 41.9
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 3.2e-117 426.8 664 43.7
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 5.5e-117 426.0 647 43.3
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 7.1e-117 425.6 638 41.4
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 3.5e-116 423.3 670 40.7
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 4.6e-116 422.9 681 47.4
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 6.0e-116 422.5 624 43.8
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 1.0e-115 421.8 634 43.2
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 3.9e-115 419.9 729 40.2
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 4.3e-114 416.4 652 41.1
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 4.8e-113 412.9 735 39.3
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 4.8e-113 412.9 598 42.3
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.1e-112 410.2 640 41.4
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 9.0e-112 408.7 649 41.3
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.2e-111 408.3 640 40.8
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.5e-111 407.9 668 39.4
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 2.0e-111 407.5 649 40.7
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 3.4e-111 406.8 602 42.0
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.7e-110 404.4 640 40.6
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 4.9e-110 402.9 643 40.9
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 5.5e-109 399.4 720 39.2
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.2e-108 398.3 644 40.8
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 7.9e-108 395.6 686 47.1
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 2.3e-107 394.0 711 36.7
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 5.1e-107 392.9 642 38.2
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.5e-106 391.3 683 38.1
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.3e-105 388.3 675 46.5
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 1.3e-105 388.3 673 37.9
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.8e-105 386.3 703 37.8
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 1.1e-104 385.2 921 36.8
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-104 385.2 746 41.3
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 1.8e-104 384.4 524 45.6
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 1.8e-104 384.4 600 39.7
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 5.3e-104 382.9 721 42.0
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 7.7e-103 379.0 616 39.9
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 7.7e-103 379.0 703 37.6
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 3.8e-102 376.7 734 37.1
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 4.6e-100 369.8 673 38.2
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.4e-96 358.2 674 37.5
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 2.6e-95 354.0 685 35.8
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 4.5e-95 353.2 628 39.6
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 5.9e-95 352.8 294 65.3
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 5.0e-94 349.7 617 38.6
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 7.4e-90 335.9 608 38.5
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 1.8e-88 331.3 736 41.0
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 4.1e-88 330.1 531 42.4
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 4.7e-84 316.6 519 42.4
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 1.5e-82 311.6 390 54.4
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 3.7e-81 307.0 265 58.9
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 9.1e-80 302.4 523 40.9
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.1e-72 277.3 193 67.4
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.2e-69 266.9 232 58.2
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 8.3e-65 252.7 211 61.6
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 1.4e-64 251.9 752 35.4
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 9.1e-64 249.2 209 62.7
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 3.3e-61 240.7 665 34.0
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 4.4e-58 230.3 566 31.6
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.4e-56 224.6 566 31.3
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 7.0e-56 223.0 199 57.3
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.0e-51 209.1 569 29.3
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 4.6e-47 193.7 309 40.5
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 4.3e-45 187.2 215 49.3
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.5e-42 178.7 238 45.8
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 1.5e-42 178.7 199 48.2
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 9.8e-42 176.0 139 67.6
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 7.8e-39 166.4 266 37.6
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 2.7e-31 141.4 146 51.4
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 6.6e-30 136.7 206 38.3
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 2.8e-28 131.3 229 34.9
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 4.4e-26 124.0 193 39.4
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 4.4e-26 124.0 193 39.4
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 2.1e-23 115.2 195 39.0
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 3.9e-22 110.9 100 58.0
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 9.0e-19 99.8 410 27.1
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.2e-18 99.4 144 39.6
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 1.3e-17 95.9 80 56.2
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 3.5e-15 87.8 136 35.3
Medtr1g069480 Medicago truncatula HOM05D005415 ORTHO05D006242 6.0e-15 87.0 104 42.3
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 2.5e-13 81.6 61 59.0
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 1.3e-12 79.3 131 39.7
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 2.4e-11 75.1 98 46.9
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 2.6e-10 71.6 84 36.9
Cre16.g653000 Chlamydomonas reinhardtii HOM05D006752 ORTHO05D008597 7.6e-10 70.1 136 35.3
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 1.3e-09 69.3 47 72.3
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 1.1e-08 66.2 48 62.5
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 1.4e-08 65.9 172 31.4
CARHR192900 Cardamine hirsuta HOM05D006752 ORTHO05D008597 3.2e-08 64.7 122 32.0
THA.LOC104815109 Tarenaya hassleriana HOM05D006752 ORTHO05D008597 5.4e-08 63.9 181 26.0
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 5.4e-08 63.9 90 40.0
Eucgr.C01084 Eucalyptus grandis HOM05D006752 ORTHO05D008597 1.2e-07 62.8 133 33.8
Phvul.009G200000 Phaseolus vulgaris HOM05D006752 ORTHO05D008597 1.2e-07 62.8 127 29.9
Nn8g39294 Nelumbo nucifera HOM05D006752 ORTHO05D008597 2.7e-07 61.6 122 32.8
CBR_g41660 Chara braunii HOM05D001740 ORTHO05D001468 6.0e-07 60.5 122 32.8
Manes.03G066500 Manihot esculenta HOM05D006752 ORTHO05D008597 1.3e-06 59.3 123 32.5
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 1.3e-06 59.3 73 42.5
PSO782G3782 Papaver somniferum HOM05D006752 ORTHO05D008597 1.8e-06 58.9 125 31.2
TWI34G0637 Tripterygium wilfordii HOM05D006752 ORTHO05D008597 3.0e-06 58.2 122 29.5
Hma1.2p1_0018F.1_g013060 Hydrangea macrophylla HOM05D006752 ORTHO05D008597 3.9e-06 57.8 118 31.4
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 6.7e-06 57.0 74 40.5
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 6.7e-06 57.0 56 55.4
Actinidia20330 Actinidia chinensis HOM05D006752 ORTHO05D008597 8.7e-06 56.6 117 30.8


User provided reference genes

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