Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 4.0e-47 191.0 93 100.0
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 2.8e-24 115.2 163 44.2
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 2.8e-24 115.2 166 44.0
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 4.7e-24 114.4 59 94.9
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 4.7e-24 114.4 59 91.5
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 3.1e-23 111.7 59 91.5
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 3.1e-23 111.7 59 93.2
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 4.0e-23 111.3 60 90.0
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 4.0e-23 111.3 59 93.2
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 6.8e-23 110.5 125 50.4
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 2.6e-22 108.6 63 81.0
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 3.7e-21 104.8 59 84.7
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 4.9e-21 104.4 59 84.7
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 6.4e-21 104.0 59 84.7
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 8.4e-21 103.6 59 83.1
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 1.1e-20 103.2 59 81.4
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 1.1e-20 103.2 61 78.7
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 1.4e-20 102.8 59 81.4
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 1.4e-20 102.8 59 83.1
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 1.9e-20 102.4 60 81.7
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 2.4e-20 102.1 59 81.4
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 2.4e-20 102.1 59 83.1
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 2.4e-20 102.1 59 81.4
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 3.2e-20 101.7 59 83.1
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 3.2e-20 101.7 66 77.3
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 4.1e-20 101.3 59 83.1
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 4.1e-20 101.3 59 81.4
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 4.1e-20 101.3 59 81.4
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 5.4e-20 100.9 59 79.7
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 7.1e-20 100.5 59 81.4
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 9.2e-20 100.1 164 38.4
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 9.2e-20 100.1 59 81.4
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 1.6e-19 99.4 59 79.7
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 1.6e-19 99.4 59 83.1
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 1.6e-19 99.4 59 78.0
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 2.1e-19 99.0 59 78.0
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 2.7e-19 98.6 59 79.7
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 2.7e-19 98.6 59 78.0
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 3.5e-19 98.2 59 79.7
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 4.6e-19 97.8 59 78.0
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 4.6e-19 97.8 59 78.0
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 4.6e-19 97.8 59 78.0
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 4.6e-19 97.8 59 76.3
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 6.0e-19 97.4 60 73.3
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 6.0e-19 97.4 59 78.0
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 6.0e-19 97.4 59 76.3
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 7.8e-19 97.1 59 78.0
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 7.8e-19 97.1 59 76.3
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 7.8e-19 97.1 59 74.6
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 7.8e-19 97.1 59 76.3
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 7.8e-19 97.1 59 76.3
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 7.8e-19 97.1 59 76.3
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 7.8e-19 97.1 60 73.3
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 7.8e-19 97.1 60 73.3
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 7.8e-19 97.1 59 78.0
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 1.0e-18 96.7 59 76.3
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 1.0e-18 96.7 59 78.0
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 1.0e-18 96.7 59 74.6
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 1.0e-18 96.7 59 76.3
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 1.7e-18 95.9 59 76.3
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 1.7e-18 95.9 59 74.6
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 1.7e-18 95.9 59 76.3
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 1.7e-18 95.9 59 76.3
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 2.3e-18 95.5 59 74.6
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 2.3e-18 95.5 59 76.3
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 2.3e-18 95.5 59 76.3
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 2.3e-18 95.5 59 76.3
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 2.3e-18 95.5 59 76.3
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 3.0e-18 95.1 59 72.9
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 3.0e-18 95.1 59 76.3
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 3.0e-18 95.1 60 73.3
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 3.9e-18 94.7 59 74.6
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 3.9e-18 94.7 59 74.6
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 3.9e-18 94.7 59 74.6
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 3.9e-18 94.7 59 74.6
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 5.1e-18 94.4 59 74.6
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 5.1e-18 94.4 59 72.9
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 6.6e-18 94.0 59 72.9
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 6.6e-18 94.0 59 72.9
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 6.6e-18 94.0 59 72.9
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 6.6e-18 94.0 59 74.6
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 8.6e-18 93.6 59 74.6
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 1.1e-17 93.2 59 69.5
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 1.1e-17 93.2 59 72.9
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 1.1e-17 93.2 59 72.9
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 1.5e-17 92.8 60 71.7
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 1.9e-17 92.4 60 73.3
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 1.9e-17 92.4 59 71.2
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 1.9e-17 92.4 59 71.2
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 2.5e-17 92.0 59 74.6
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 3.3e-17 91.7 59 72.9
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 3.3e-17 91.7 59 71.2
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 4.3e-17 91.3 60 71.7
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 5.6e-17 90.9 59 72.9
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 9.6e-17 90.1 60 70.0
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 1.6e-16 89.4 149 40.3
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 2.8e-16 88.6 59 67.8
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 6.2e-16 87.4 60 63.3
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 6.2e-16 87.4 60 65.0
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 1.1e-15 86.7 60 65.0
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 1.5e-14 82.8 59 57.6
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 3.4e-14 81.6 60 63.3
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 4.4e-14 81.3 59 62.7
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 4.4e-14 81.3 59 62.7
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 5.8e-14 80.9 60 63.3
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 7.6e-14 80.5 71 56.3
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 1.3e-13 79.7 53 71.7
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 2.9e-13 78.6 60 61.7
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 2.9e-13 78.6 60 61.7
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 4.9e-13 77.8 60 60.0
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 2.4e-12 75.5 52 69.2
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 3.2e-12 75.1 56 60.7
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 7.1e-12 73.9 60 58.3
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.6e-11 72.8 42 78.6
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 4.6e-11 71.2 57 56.1
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.0e-10 70.1 59 52.5
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 3.9e-10 68.2 59 57.6
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 5.1e-10 67.8 41 78.0
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 5.1e-10 67.8 41 78.0
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 1.1e-09 66.6 40 75.0
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 7.3e-09 63.9 53 54.7
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 4.8e-08 61.2 38 71.1
MD10G1329700 Malus domestica HOM05D005528 ORTHO05D007066 5.3e-07 57.8 60 50.0


User provided reference genes

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