Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 4.8e-94 347.8 175 100.0
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.4e-90 336.3 178 96.1
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 4.1e-85 318.2 178 90.4
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 1.3e-83 313.2 177 90.4
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 1.3e-83 313.2 180 88.9
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 7.9e-81 303.9 179 86.0
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 7.9e-81 303.9 179 86.0
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.1e-80 301.2 180 86.7
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 5.1e-80 301.2 180 86.7
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 2.8e-78 295.4 180 85.6
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 8.2e-78 293.9 181 84.5
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 5.3e-77 291.2 253 64.8
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 6.9e-77 290.8 180 83.9
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 1.0e-75 287.0 178 83.1
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 2.2e-75 285.8 179 84.4
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 2.7e-73 278.9 184 79.9
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 1.1e-71 273.5 178 81.5
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 1.1e-71 273.5 179 80.4
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 1.5e-71 273.1 177 80.8
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 2.2e-70 269.2 178 82.0
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 2.8e-70 268.9 177 80.8
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 4.8e-70 268.1 177 80.8
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 8.2e-70 267.3 177 79.7
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 4.1e-69 265.0 177 77.4
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.1e-69 265.0 177 79.1
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 4.1e-69 265.0 173 76.9
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 5.3e-69 264.6 168 79.8
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 7.0e-69 264.2 177 79.1
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 9.1e-69 263.8 171 79.5
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 2.0e-68 262.7 174 77.0
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 3.5e-68 261.9 171 78.9
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.5e-68 261.9 171 78.9
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 7.7e-68 260.8 177 76.8
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 7.7e-68 260.8 171 78.4
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 7.7e-68 260.8 171 78.9
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.3e-67 260.0 174 76.4
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 3.8e-67 258.5 176 76.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 5.0e-67 258.1 178 77.5
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 1.1e-66 256.9 177 76.8
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 1.1e-66 256.9 179 76.0
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.1e-66 256.9 173 76.3
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 1.1e-66 256.9 174 76.4
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.9e-66 256.1 179 75.4
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.9e-66 256.1 172 74.4
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 2.5e-66 255.8 173 77.5
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.2e-66 255.4 177 78.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 3.2e-66 255.4 178 74.7
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 3.2e-66 255.4 176 77.3
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 5.5e-66 254.6 180 77.2
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 5.5e-66 254.6 172 74.4
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 9.4e-66 253.8 177 75.7
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 1.2e-65 253.4 171 76.0
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 1.6e-65 253.1 175 74.9
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 2.1e-65 252.7 173 75.1
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 2.1e-65 252.7 174 77.6
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 6.1e-65 251.1 172 75.6
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 8.0e-65 250.8 173 78.0
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.4e-64 250.0 175 77.7
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 1.4e-64 250.0 173 74.0
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.8e-64 249.6 173 74.6
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 3.0e-64 248.8 173 75.1
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 3.9e-64 248.4 180 75.6
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 3.9e-64 248.4 170 74.7
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 3.9e-64 248.4 170 74.7
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.7e-64 247.7 177 72.9
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 6.7e-64 247.7 173 75.7
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 6.7e-64 247.7 173 75.7
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 8.8e-64 247.3 177 74.6
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 8.8e-64 247.3 173 75.1
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.4e-63 245.0 178 73.0
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 4.4e-63 245.0 178 74.2
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 4.4e-63 245.0 169 76.3
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 9.7e-63 243.8 177 72.9
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 9.7e-63 243.8 178 73.0
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 2.2e-62 242.7 179 72.6
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 2.2e-62 242.7 177 71.2
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 2.8e-62 242.3 177 72.3
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.8e-62 242.3 178 70.8
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 3.7e-62 241.9 177 71.8
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 3.7e-62 241.9 177 72.3
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 3.7e-62 241.9 177 72.3
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 4.8e-62 241.5 180 70.6
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 4.8e-62 241.5 173 74.0
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 6.3e-62 241.1 174 71.8
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 8.2e-62 240.7 177 71.8
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 8.2e-62 240.7 177 71.8
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-61 240.4 176 72.7
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.1e-61 240.4 179 72.1
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 1.8e-61 239.6 172 72.1
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.4e-61 239.2 178 70.2
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 5.3e-61 238.0 178 69.7
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 5.3e-61 238.0 178 69.7
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 9.1e-61 237.3 178 69.7
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 1.6e-60 236.5 175 70.9
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 2.0e-60 236.1 180 68.9
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 3.5e-60 235.3 179 70.9
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.5e-60 235.3 176 71.0
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 4.5e-60 235.0 139 82.7
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 4.5e-60 235.0 179 70.4
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 5.9e-60 234.6 176 71.0
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 5.9e-60 234.6 179 69.8
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 5.9e-60 234.6 181 70.7
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 7.7e-60 234.2 180 69.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 7.7e-60 234.2 187 66.3
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.0e-59 233.8 178 69.7
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 1.0e-59 233.8 153 73.2
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.7e-59 233.0 179 69.3
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 6.5e-59 231.1 177 67.2
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 1.9e-58 229.6 183 66.7
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 3.2e-58 228.8 177 68.9
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.2e-58 228.4 180 68.3
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 5.5e-58 228.0 169 71.0
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 9.4e-58 227.3 180 68.3
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 9.4e-58 227.3 179 68.2
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 2.1e-57 226.1 175 69.1
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 2.7e-57 225.7 185 68.6
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 2.7e-57 225.7 137 80.3
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 8.0e-57 224.2 157 72.6
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 2.3e-56 222.6 171 68.4
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 2.3e-56 222.6 175 66.3
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 5.2e-56 221.5 166 69.3
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 8.8e-56 220.7 172 65.7
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 4.4e-55 218.4 169 68.6
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 1.3e-54 216.9 169 68.0
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 6.3e-54 214.5 138 75.4
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.1e-53 213.8 175 66.3
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.8e-53 213.0 186 62.9
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 1.2e-52 210.3 178 64.0
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-52 210.3 157 70.1
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 2.7e-52 209.1 133 79.7
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 3.6e-49 198.7 119 80.7
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.2e-47 193.7 174 61.5
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 3.7e-46 188.7 140 62.9
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 7.0e-45 184.5 146 63.7
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 1.2e-44 183.7 179 58.1
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 1.6e-44 183.3 170 58.8
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 3.5e-44 182.2 156 59.6
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 2.9e-43 179.1 153 62.7
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.1e-41 172.9 150 57.3
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 5.9e-36 154.8 95 81.1
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.3e-35 153.7 91 81.3
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.7e-35 153.3 174 49.4
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.8e-33 146.0 88 80.7
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 4.7e-33 145.2 84 81.0
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 1.4e-32 143.7 121 64.5
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.2e-31 140.6 177 46.9
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 4.4e-31 138.7 92 81.5
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 7.5e-31 137.9 116 69.0
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 1.7e-30 136.7 129 61.2
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 1.4e-29 133.7 126 61.9
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 7.0e-29 131.3 114 63.2
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 1.5e-23 113.6 123 43.1
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.0e-23 113.2 91 70.3
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.0e-23 113.2 91 70.3
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 3.4e-23 112.5 122 49.2
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 4.6e-20 102.1 116 39.7
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 1.1e-18 97.4 138 40.6
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 3.3e-18 95.9 84 63.1
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 4.1e-13 79.0 65 61.5
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 2.1e-12 76.6 48 77.1
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 3.5e-12 75.9 106 37.7
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.0e-11 72.8 65 60.0
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 8.1e-09 64.7 79 49.4
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 8.9e-08 61.2 84 44.0
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 1.5e-07 60.5 193 32.6
Cc01_g11080 Coffea canephora HOM05D004222 ORTHO05D154025 4.4e-07 58.9 121 38.8


User provided reference genes

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