Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 3.0e-207 725.7 358 100.0
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 2.8e-160 569.7 336 89.0
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 2.5e-137 493.4 327 78.3
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 6.3e-136 488.8 324 78.1
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 2.9e-117 426.8 323 69.0
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 3.3e-113 413.3 323 65.9
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.8e-111 407.5 320 65.6
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 7.0e-111 405.6 330 64.2
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 1.2e-110 404.8 329 65.0
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 3.5e-102 376.7 326 62.3
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.6e-78 298.1 328 51.2
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 3.5e-78 297.0 328 50.6
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 4.6e-78 296.6 326 49.4
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 6.6e-77 292.7 292 52.7
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.1e-76 292.0 328 50.6
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 1.1e-76 292.0 324 48.8
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 3.3e-76 290.4 294 52.4
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 3.6e-75 287.0 314 49.7
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 8.1e-75 285.8 310 51.9
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.2e-73 282.0 315 48.3
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 2.6e-73 280.8 286 48.3
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 1.7e-72 278.1 297 52.2
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 1.4e-71 275.0 277 54.2
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 1.2e-70 271.9 312 49.0
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 3.5e-70 270.4 277 52.3
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 6.0e-70 269.6 307 44.3
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.3e-69 268.5 321 47.0
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 5.1e-69 266.5 304 49.0
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 8.6e-69 265.8 289 50.2
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 1.1e-68 265.4 335 46.0
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 3.3e-68 263.8 292 50.3
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 7.3e-68 262.7 270 51.5
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 9.5e-68 262.3 289 49.5
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 2.1e-67 261.2 290 47.6
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 3.6e-67 260.4 287 46.3
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 3.6e-67 260.4 315 46.7
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 6.8e-66 256.1 302 44.7
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 8.9e-66 255.8 299 43.8
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 1.5e-65 255.0 299 43.5
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 5.8e-65 253.1 331 42.6
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 5.8e-65 253.1 333 41.4
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 9.9e-65 252.3 312 43.3
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 1.4e-63 248.4 301 46.2
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 3.2e-63 247.3 302 44.7
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 7.1e-63 246.1 326 43.9
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 2.1e-62 244.6 288 45.5
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 4.6e-62 243.4 311 44.7
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 6.0e-62 243.0 320 44.4
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 2.3e-61 241.1 325 43.4
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 2.5e-60 237.7 326 40.8
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 5.6e-60 236.5 296 44.3
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 7.3e-60 236.1 299 43.8
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.2e-59 235.3 310 42.3
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 6.2e-59 233.0 264 48.9
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 1.1e-58 232.3 297 44.1
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 1.4e-58 231.9 200 55.5
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 2.0e-57 228.0 251 49.4
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 2.6e-57 227.6 260 43.8
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 5.8e-57 226.5 295 40.0
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 1.7e-56 224.9 297 41.8
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 4.9e-56 223.4 307 40.1
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 1.4e-55 221.9 307 44.6
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 1.9e-55 221.5 269 42.8
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 2.1e-54 218.0 283 40.6
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 2.7e-54 217.6 324 39.8
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 6.0e-54 216.5 312 42.3
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 6.6e-53 213.0 267 43.1
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 6.6e-53 213.0 324 38.6
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 2.5e-52 211.1 312 40.7
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 3.3e-52 210.7 310 41.6
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 9.6e-52 209.1 260 43.1
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 9.6e-52 209.1 324 38.0
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 6.2e-51 206.5 311 39.9
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 6.2e-51 206.5 310 40.0
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.4e-50 205.3 257 42.0
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 1.4e-50 205.3 324 37.3
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 2.4e-50 204.5 335 37.0
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 4.0e-50 203.8 315 39.0
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 4.0e-50 203.8 315 39.0
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 9.0e-50 202.6 335 36.7
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 2.0e-49 201.4 295 41.7
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 1.3e-48 198.7 289 39.8
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 3.8e-48 197.2 287 38.7
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 4.9e-48 196.8 301 36.2
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 6.4e-48 196.4 310 39.7
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 8.4e-48 196.1 311 39.2
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 5.4e-47 193.4 267 42.7
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 7.1e-47 193.0 287 37.6
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 1.3e-45 188.7 229 43.2
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 3.0e-45 187.6 326 36.8
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 1.9e-44 184.9 221 44.3
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 4.9e-40 170.2 226 40.3
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 3.2e-39 167.5 322 34.2
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 9.7e-28 129.4 151 45.0
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.4e-26 124.8 118 55.9
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 6.9e-26 123.2 118 55.1
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 4.3e-20 104.0 121 51.2
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 7.4e-20 103.2 305 29.2
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 1.7e-19 102.1 105 54.3
Cpa.g.sc8.109 Carica papaya HOM05D007486 ORTHO05D003673 5.5e-07 60.5 329 23.1


User provided reference genes

Program Settings