Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 0.0e+00 2327.0 1162 100.0
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 0.0e+00 1895.6 1143 84.4
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 0.0e+00 1768.4 1122 80.1
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 0.0e+00 1598.6 1144 72.4
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 0.0e+00 1554.7 1112 72.4
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 0.0e+00 1515.0 1142 70.4
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 0.0e+00 1483.0 1213 64.8
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 0.0e+00 1453.0 1156 65.8
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 0.0e+00 1313.5 1151 62.5
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 0.0e+00 1125.9 1214 52.5
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 0.0e+00 1078.9 1221 49.1
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 2.7e-310 1068.9 1227 48.7
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 6.9e-306 1054.3 666 80.0
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 9.0e-306 1053.9 1179 50.2
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 4.9e-296 1021.5 1171 49.7
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 4.8e-291 1005.0 1209 48.6
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 9.0e-290 1000.7 1185 49.0
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 2.5e-287 992.6 1221 47.1
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 8.7e-285 984.2 1178 47.3
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 9.0e-282 974.2 1250 46.4
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 7.9e-278 961.1 1207 47.5
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 2.0e-276 956.4 1179 47.3
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 2.0e-273 946.4 885 55.6
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.8e-266 923.3 1218 44.7
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 1.8e-266 923.3 1174 47.0
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 5.3e-266 921.8 782 60.0
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 5.3e-266 921.8 1043 50.2
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 1.2e-257 894.0 888 53.8
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 9.8e-252 874.4 1253 41.7
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 2.2e-248 863.2 1223 43.9
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 1.5e-247 860.5 795 56.0
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 2.3e-237 826.6 1206 40.9
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 4.4e-236 822.4 1204 43.7
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 1.3e-232 810.8 1164 42.5
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 5.0e-232 808.9 781 53.6
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 3.6e-230 802.7 975 47.9
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 1.7e-227 793.9 1153 41.3
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 2.9e-227 793.1 971 47.3
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.7e-227 792.7 1035 45.6
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 3.5e-225 786.2 1191 42.9
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 1.5e-223 780.8 1253 39.0
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 1.4e-221 774.2 1035 45.1
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 5.2e-221 772.3 871 48.3
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 6.8e-221 771.9 1185 40.2
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 3.9e-216 756.1 1155 40.3
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 2.5e-215 753.4 799 49.9
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 5.6e-215 752.3 774 51.3
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 1.2e-214 751.1 1164 40.2
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 1.8e-213 747.3 1153 39.8
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 1.8e-213 747.3 782 50.9
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 3.4e-212 743.0 782 50.9
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 5.8e-212 742.3 865 48.6
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 1.6e-206 724.2 868 46.8
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 1.5e-204 717.6 1076 40.2
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 3.8e-203 713.0 899 43.3
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 1.7e-200 704.1 843 46.4
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 1.5e-196 691.0 1151 39.4
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 3.4e-196 689.9 578 64.7
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 2.1e-193 680.6 1149 37.7
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 4.3e-191 672.9 1161 38.1
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 8.4e-187 658.7 1128 37.3
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 9.3e-186 655.2 1153 36.9
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 1.0e-179 635.2 862 45.0
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 2.8e-174 617.1 419 75.7
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 2.0e-164 584.3 595 51.4
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 2.5e-162 577.4 813 44.0
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 1.5e-151 541.6 646 44.1
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 4.4e-151 540.0 1149 33.8
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 2.8e-150 537.3 828 40.2
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.8e-149 534.6 817 38.8
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 6.7e-144 516.2 801 38.5
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 2.7e-140 504.2 527 50.9
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 1.7e-139 501.5 731 41.9
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 1.8e-136 491.5 807 36.9
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.5e-135 488.4 809 39.7
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 2.4e-125 454.5 1102 30.9
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 4.7e-121 440.3 463 51.4
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 3.8e-94 350.9 363 57.6
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 4.5e-71 274.2 754 28.4
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 2.1e-68 265.4 373 41.0
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 3.9e-67 261.2 241 58.5
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 5.6e-66 257.3 241 57.7
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 6.2e-65 253.8 241 57.3
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 1.4e-61 242.7 196 61.2
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 4.8e-57 227.6 798 24.9
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 6.3e-57 227.3 651 30.1
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 5.3e-48 197.6 583 30.5
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 1.2e-39 169.9 580 27.4
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.0e-30 140.2 108 64.8
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 2.1e-28 132.5 133 49.6
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 8.2e-25 120.6 136 47.1
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 8.5e-22 110.5 76 69.7
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 5.7e-18 97.8 671 21.9
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 9.1e-16 90.5 59 64.4
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 7.7e-15 87.4 273 30.0
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 2.3e-14 85.9 333 27.3
PRCOL_00001248 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.5e-10 73.2 547 22.1
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 1.1e-08 67.0 54 63.0
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 7.0e-08 64.3 118 34.7
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 1.6e-07 63.2 35 85.7
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 1.6e-07 63.2 35 88.6
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 2.7e-07 62.4 224 30.4
MCO09G563 Micromonas commoda HOM05D009332 ORTHO05D011893 2.7e-07 62.4 172 26.7
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 5.9e-07 61.2 35 80.0
Medtr8g062580 Medicago truncatula HOM05D000152 ORTHO05D001356 1.0e-06 60.5 109 41.3
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.3e-06 60.1 198 25.3
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 3.8e-06 58.5 32 81.2


User provided reference genes

Program Settings