Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G137400 Glycine max HOM05D003397 ORTHO05D046763 3.5e-55 218.0 108 100.0
Glyma.06G105900 Glycine max HOM05D003397 ORTHO05D004390 4.0e-43 177.9 93 93.5
Glyma.04G104900 Glycine max HOM05D003397 ORTHO05D004390 9.0e-43 176.8 93 92.5
Phvul.009G028700 Phaseolus vulgaris HOM05D003397 ORTHO05D004390 4.5e-42 174.5 93 91.4
Psat5g137080 Pisum sativum HOM05D003397 ORTHO05D004390 5.8e-42 174.1 93 89.2
VMungo1309G3072 Vigna mungo HOM05D003397 ORTHO05D004390 1.0e-41 173.3 93 90.3
Medtr3g073860 Medicago truncatula HOM05D003397 ORTHO05D004390 1.3e-41 172.9 93 88.2
TPR.G34613 Trifolium pratense HOM05D003397 ORTHO05D004390 1.3e-41 172.9 93 88.2
Lalb_Chr08g0241871 Lupinus albus HOM05D003397 ORTHO05D004390 3.8e-41 171.4 93 88.2
Cfa015924 Carpinus fangiana HOM05D003397 ORTHO05D004390 8.4e-41 170.2 93 87.1
Haze_00572 Corylus avellana HOM05D003397 ORTHO05D004390 8.4e-41 170.2 93 87.1
TWI12G0718 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 8.4e-41 170.2 93 88.2
Potri.002G092700 Populus trichocarpa HOM05D003397 ORTHO05D004390 1.4e-40 169.5 93 88.2
Ca_15227_v3 Cicer arietinum L. HOM05D003397 ORTHO05D004390 1.9e-40 169.1 93 86.0
Manes.18G070300 Manihot esculenta HOM05D003397 ORTHO05D004390 1.9e-40 169.1 93 88.2
FvH4_5g38000 Fragaria vesca HOM05D003397 ORTHO05D004390 2.5e-40 168.7 93 86.0
FAN08G3668 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.5e-40 168.7 93 86.0
FAN18G1561 Fragaria x ananassa HOM05D003397 ORTHO05D004390 2.5e-40 168.7 93 86.0
Lj1g0005089 Lotus japonicus HOM05D003397 ORTHO05D004390 2.5e-40 168.7 93 89.2
Prupe.1G512000 Prunus persica HOM05D003397 ORTHO05D004390 2.5e-40 168.7 93 86.0
PGSC0003DMG400008551 Solanum tuberosum HOM05D003397 ORTHO05D004390 2.5e-40 168.7 89 89.9
FAN13G2833 Fragaria x ananassa HOM05D003397 ORTHO05D004390 4.2e-40 167.9 93 84.9
CANSAT25G3899 Cannabis sativa HOM05D003397 ORTHO05D004390 5.5e-40 167.5 93 86.0
Potri.005G169100 Populus trichocarpa HOM05D003397 ORTHO05D004390 5.5e-40 167.5 93 87.1
GSVIVG01008991001 Vitis vinifera HOM05D003397 ORTHO05D004390 5.5e-40 167.5 93 86.0
Duzib116G0371 Durio zibethinus HOM05D003397 ORTHO05D004390 7.1e-40 167.2 93 87.1
Sabra02G0073200 Salix brachista HOM05D003397 ORTHO05D004390 7.1e-40 167.2 89 91.0
Aa31LG6G8980 Aethionema arabicum HOM05D003397 ORTHO05D004390 9.3e-40 166.8 92 85.9
Cpa.g.sc66.90 Carica papaya HOM05D003397 ORTHO05D004390 9.3e-40 166.8 93 86.0
CiPaw.06G022200 Carya illinoinensis HOM05D003397 ORTHO05D004390 9.3e-40 166.8 93 84.9
FAN04G2782 Fragaria x ananassa HOM05D003397 ORTHO05D004390 9.3e-40 166.8 93 84.9
Manes.02G155300 Manihot esculenta HOM05D003397 ORTHO05D004390 9.3e-40 166.8 93 86.0
RcHm_v2.0_Chr7g0239931 Rosa chinensis HOM05D003397 ORTHO05D004390 9.3e-40 166.8 93 83.9
TAR625G0333 Trochodendron aralioides HOM05D003397 ORTHO05D004390 9.3e-40 166.8 92 84.8
Actinidia29577 Actinidia chinensis HOM05D003397 ORTHO05D004390 1.2e-39 166.4 93 84.9
CiPaw.05G233000 Carya illinoinensis HOM05D003397 ORTHO05D004390 1.2e-39 166.4 93 83.9
Cc10_g05850 Coffea canephora HOM05D003397 ORTHO05D004390 1.2e-39 166.4 93 86.0
Peaxi162Scf00310g00211 Petunia axillaris HOM05D003397 ORTHO05D004390 1.2e-39 166.4 93 84.9
SGA_v2.0_scaffold201G41423 Striga asiatica HOM05D003397 ORTHO05D004390 1.6e-39 166.0 97 83.5
Migut.C00221 Erythranthe guttata HOM05D003397 ORTHO05D004390 2.1e-39 165.6 93 84.9
Nn1g05275 Nelumbo nucifera HOM05D003397 ORTHO05D004390 2.1e-39 165.6 92 85.9
Nitab4.5_0000421g0140 Nicotiana tabacum HOM05D003397 ORTHO05D004390 2.1e-39 165.6 89 87.6
PGR042G1140 Punica granatum HOM05D003397 ORTHO05D004390 2.1e-39 165.6 93 83.9
Solyc12g056940.2 Solanum lycopersicum HOM05D003397 ORTHO05D004390 2.1e-39 165.6 89 88.8
Sopen12g029600 Solanum pennellii HOM05D003397 ORTHO05D004390 2.1e-39 165.6 89 88.8
THA.LOC104813126 Tarenaya hassleriana HOM05D003397 ORTHO05D004390 2.1e-39 165.6 92 84.8
MELO3C022793.2 Cucumis melo HOM05D003397 ORTHO05D004390 2.7e-39 165.2 93 81.7
CsaV3_5G023610 Cucumis sativus L. HOM05D003397 ORTHO05D004390 2.7e-39 165.2 93 81.7
Oeu024555.1 Olea europaea HOM05D003397 ORTHO05D004390 2.7e-39 165.2 93 84.9
QL12p035954 Quercus lobata HOM05D003397 ORTHO05D004390 2.7e-39 165.2 93 83.9
Sc04g0006510 Simmondsia chinensis HOM05D003397 ORTHO05D004390 2.7e-39 165.2 93 83.9
TWI56G0794 Tripterygium wilfordii HOM05D003397 ORTHO05D004390 2.7e-39 165.2 93 84.9
arahy.Tifrunner.gnm1.ann1.ZST20A Arachis hypogaea HOM05D003397 ORTHO05D004390 3.5e-39 164.9 93 84.9
CSS0020243 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 3.5e-39 164.9 96 85.4
CSS0020930 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 3.5e-39 164.9 96 85.4
Nitab4.5_0000469g0180 Nicotiana tabacum HOM05D003397 ORTHO05D004390 3.5e-39 164.9 93 83.9
Atru.chr13.1263 Acer truncatum HOM05D003397 ORTHO05D004390 4.6e-39 164.5 93 83.9
Ciclev10000007m.g Citrus clementina HOM05D003397 ORTHO05D004390 4.6e-39 164.5 93 82.8
Sc20g0003310 Simmondsia chinensis HOM05D003397 ORTHO05D004390 4.6e-39 164.5 93 83.9
Gohir.A01G186450 Gossypium hirsutum HOM05D003397 ORTHO05D004390 6.0e-39 164.1 93 84.9
Gohir.D01G183100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 6.0e-39 164.1 93 84.9
Gorai.002G219400 Gossypium raimondii HOM05D003397 ORTHO05D004390 6.0e-39 164.1 93 84.9
Lsat_1_v5_gn_9_44420 Lactuca sativa HOM05D003397 ORTHO05D004390 6.0e-39 164.1 93 86.0
MD08G1178000 Malus domestica HOM05D003397 ORTHO05D004390 6.0e-39 164.1 93 83.9
Medtr3g073820 Medicago truncatula HOM05D003397 ORTHO05D004390 6.0e-39 164.1 93 84.9
Peaxi162Scf00160g01527 Petunia axillaris HOM05D003397 ORTHO05D004390 6.0e-39 164.1 89 87.6
TAR381G1558 Trochodendron aralioides HOM05D003397 ORTHO05D004390 6.0e-39 164.1 92 83.7
Nitab4.5_0006548g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 7.9e-39 163.7 89 86.5
vmacro04766 Vaccinium macrocarpon HOM05D003397 ORTHO05D004390 7.9e-39 163.7 93 84.9
MSTRG.944 Avicennia marina HOM05D003397 ORTHO05D004390 1.0e-38 163.3 93 84.9
ECA236G4037 Erigeron canadensis HOM05D003397 ORTHO05D004390 1.0e-38 163.3 93 82.8
MD15G1363500 Malus domestica HOM05D003397 ORTHO05D004390 1.0e-38 163.3 93 83.9
arahy.Tifrunner.gnm1.ann1.L14VXE Arachis hypogaea HOM05D003397 ORTHO05D004390 1.3e-38 162.9 93 83.9
EL10Ac1g01671 Beta vulgaris HOM05D003397 ORTHO05D004390 1.3e-38 162.9 93 83.9
AUR62034355 Chenopodium quinoa HOM05D003397 ORTHO05D004390 1.3e-38 162.9 93 84.9
CSS0006750 Camellia sinensis var. sinensis HOM05D003397 ORTHO05D004390 1.8e-38 162.5 93 83.9
AUR62022354 Chenopodium quinoa HOM05D003397 ORTHO05D004390 1.8e-38 162.5 93 83.9
Rhsim07G0200500 Rhododendron simsii HOM05D003397 ORTHO05D004390 1.8e-38 162.5 93 83.9
HanXRQChr11g0320961 Helianthus annuus HOM05D003397 ORTHO05D004390 2.3e-38 162.2 93 83.9
Thecc.08G111500 Theobroma cacao HOM05D003397 ORTHO05D004390 2.3e-38 162.2 93 84.9
Ah.05g168580 Amaranthus hybridus HOM05D003397 ORTHO05D004390 3.0e-38 161.8 93 82.8
CARHR034860 Cardamine hirsuta HOM05D003397 ORTHO05D004390 3.0e-38 161.8 92 83.7
Lalb_Chr11g0065541 Lupinus albus HOM05D003397 ORTHO05D004390 3.0e-38 161.8 93 83.9
Nn5g29020 Nelumbo nucifera HOM05D003397 ORTHO05D004390 5.1e-38 161.0 92 83.7
Lj4C108T3 Lonicera japonica HOM05D003397 ORTHO05D004390 6.7e-38 160.6 107 74.8
Sed0010592 Sechium edule HOM05D003397 ORTHO05D004390 8.7e-38 160.2 93 80.6
Aqoxy5G01966 Aquilegia oxysepala HOM05D003397 ORTHO05D004390 1.1e-37 159.8 92 81.5
Carub.0001s3360 Capsella rubella HOM05D003397 ORTHO05D004390 1.5e-37 159.5 92 82.6
Eucgr.F00484 Eucalyptus grandis HOM05D003397 ORTHO05D004390 1.5e-37 159.5 93 81.7
Thhalv10003506m.g Eutrema salsugineum HOM05D003397 ORTHO05D004390 1.5e-37 159.5 92 82.6
CANSAT11G0938 Cannabis sativa HOM05D003397 ORTHO05D004390 1.9e-37 159.1 93 80.6
MBI02_g30884_MAGBIO Magnolia biondii HOM05D003397 ORTHO05D004390 1.9e-37 159.1 92 82.6
DCAR_013178 Daucus carota HOM05D003397 ORTHO05D004390 2.5e-37 158.7 93 81.7
Sp1g30640 Schrenkiella parvula HOM05D003397 ORTHO05D004390 2.5e-37 158.7 92 80.4
AL1G50870 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 4.3e-37 157.9 92 81.5
Gohir.D05G269700 Gossypium hirsutum HOM05D003397 ORTHO05D004390 4.3e-37 157.9 93 81.7
HanXRQChr05g0147241 Helianthus annuus HOM05D003397 ORTHO05D004390 4.3e-37 157.9 93 81.7
AT1G36160 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 5.7e-37 157.5 92 81.5
AT1G36180 Arabidopsis thaliana HOM05D003397 ORTHO05D004390 5.7e-37 157.5 89 83.1
BcaB04g17823 Brassica carinata HOM05D003397 ORTHO05D004390 5.7e-37 157.5 92 80.4
BcaC07g37499 Brassica carinata HOM05D003397 ORTHO05D004390 5.7e-37 157.5 92 80.4
BolC8t47818H Brassica oleracea HOM05D003397 ORTHO05D004390 5.7e-37 157.5 92 80.4
CARHR034880 Cardamine hirsuta HOM05D003397 ORTHO05D004390 5.7e-37 157.5 93 80.6
ATR0564G238 Amborella trichopoda HOM05D003397 ORTHO05D004390 7.4e-37 157.1 92 79.3
A08p07970 Brassica napus HOM05D003397 ORTHO05D004390 7.4e-37 157.1 92 79.3
BraA08t32819Z Brassica rapa HOM05D003397 ORTHO05D004390 7.4e-37 157.1 92 79.3
Gohir.A05G268100 Gossypium hirsutum HOM05D003397 ORTHO05D004390 1.3e-36 156.4 93 80.6
Peaxi162Scf00030g01821 Petunia axillaris HOM05D003397 ORTHO05D004390 1.3e-36 156.4 93 79.6
Gorai.009G282300 Gossypium raimondii HOM05D003397 ORTHO05D004390 2.2e-36 155.6 93 80.6
SHI09383 Sapria himalayana HOM05D003397 ORTHO05D004390 3.7e-36 154.8 93 77.4
Carub.0001s3361 Capsella rubella HOM05D003397 ORTHO05D004390 1.1e-35 153.3 92 79.3
PSO210G7545 Papaver somniferum HOM05D003397 ORTHO05D004390 1.4e-35 152.9 92 78.3
PSO447G0125 Papaver somniferum HOM05D003397 ORTHO05D004390 1.4e-35 152.9 92 78.3
CDE05G1314 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 1.8e-35 152.5 107 69.2
ECA232G1190 Erigeron canadensis HOM05D003397 ORTHO05D004390 3.1e-35 151.8 93 78.5
unitig_46.g18003 Utricularia gibba HOM05D003397 ORTHO05D004390 3.1e-35 151.8 93 76.3
CDE05G2113 Ceratophyllum demersum HOM05D003397 ORTHO05D004390 2.0e-34 149.1 92 76.1
HPP92_027255 Vanilla planifolia HOM05D003397 ORTHO05D004390 3.4e-34 148.3 92 76.1
Os10g0363300 Oryza sativa ssp. japonica HOM05D003397 ORTHO05D004390 1.0e-33 146.7 92 75.0
Zm00001eb223980 Zea mays HOM05D003397 ORTHO05D004390 1.0e-33 146.7 92 76.1
SEGI_22371 Sequoiadendron giganteum HOM05D003397 ORTHO05D004390 1.3e-33 146.4 93 72.0
COL.COLO4_16461 Corchorus olitorius HOM05D003397 ORTHO05D004390 1.7e-33 146.0 83 84.3
AL1G50880 Arabidopsis lyrata HOM05D003397 ORTHO05D004390 2.2e-33 145.6 92 75.0
BcaB07g33794 Brassica carinata HOM05D003397 ORTHO05D004390 6.5e-33 144.1 92 75.0
BcaC08g43005 Brassica carinata HOM05D003397 ORTHO05D004390 6.5e-33 144.1 92 75.0
C06p02460 Brassica napus HOM05D003397 ORTHO05D004390 6.5e-33 144.1 92 75.0
BolC6t35373H Brassica oleracea HOM05D003397 ORTHO05D004390 6.5e-33 144.1 92 75.0
A06p04730 Brassica napus HOM05D003397 ORTHO05D004390 3.2e-32 141.7 92 73.9
BraA06t23676Z Brassica rapa HOM05D003397 ORTHO05D004390 3.2e-32 141.7 92 73.9
Pp3c4_17500 Physcomitrium patens HOM05D003397 ORTHO05D004390 4.6e-31 137.9 93 69.9
AagrBONN_evm.TU.Sc2ySwM_228.4168 Anthoceros agrestis HOM05D003397 ORTHO05D004390 1.0e-30 136.7 93 67.7
Zm00001eb419400 Zea mays HOM05D003397 ORTHO05D004390 3.0e-30 135.2 92 68.5
Zm00001eb086560 Zea mays HOM05D003397 ORTHO05D004390 3.9e-30 134.8 92 68.5
Pp3c13_14480 Physcomitrium patens HOM05D003397 ORTHO05D004390 1.3e-28 129.8 93 63.4
Mapoly0002s0049 Marchantia polymorpha HOM05D003397 ORTHO05D004390 4.8e-28 127.9 93 63.4
SMO336G0042 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 4.8e-28 127.9 93 64.5
SMO347G0105 Selaginella moellendorffii HOM05D003397 ORTHO05D004390 4.8e-28 127.9 93 64.5
CBR_g21136 Chara braunii HOM05D003397 ORTHO05D004390 9.1e-27 123.6 93 63.4
ClCG03G009000 Citrullus lanatus HOM05D003397 ORTHO05D004390 9.1e-27 123.6 78 76.9
Nitab4.5_0005253g0020 Nicotiana tabacum HOM05D003397 ORTHO05D004390 9.1e-27 123.6 78 76.9
Dinv13041 Davidia involucrata HOM05D003397 ORTHO05D004390 7.4e-21 104.0 56 89.3
Lj1g0014764 Lotus japonicus HOM05D003397 ORTHO05D046763 1.0e-14 83.6 103 49.5
Cre08.g373050 Chlamydomonas reinhardtii HOM05D003397 ORTHO05D004390 1.8e-14 82.8 92 46.7
Cfa022865 Carpinus fangiana HOM05D003397 ORTHO05D004390 5.3e-11 71.2 87 37.9
MCO01G438 Micromonas commoda HOM05D003397 ORTHO05D004390 3.2e-08 62.0 103 33.0
PRCOL_00006044 Prasinoderma coloniale HOM05D003397 ORTHO05D004390 1.8e-06 56.2 57 45.6
Dinv44744 Davidia involucrata HOM05D003397 ORTHO05D004390 2.3e-06 55.8 26 96.2
PRCOL_00001984 Prasinoderma coloniale HOM05D003397 ORTHO05D004390 2.3e-06 55.8 86 37.2
CAN.G182.15 Capsicum annuum HOM05D003397 ORTHO05D000137 3.0e-06 55.5 32 81.2


User provided reference genes

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