Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G129400 Glycine max HOM05D003612 ORTHO05D004323 1.4e-167 592.8 296 100.0
Phvul.008G158112 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 2.9e-91 339.3 287 63.4
VMungo1309G0648 Vigna mungo HOM05D003612 ORTHO05D004323 3.5e-89 332.4 284 62.7
VMungo1383G3573 Vigna mungo HOM05D003612 ORTHO05D004323 3.0e-88 329.3 284 62.7
TPR.G6202 Trifolium pratense HOM05D003612 ORTHO05D004323 1.3e-83 313.9 287 61.0
Lj1g0003709 Lotus japonicus HOM05D003612 ORTHO05D004323 5.4e-82 308.5 276 60.5
Psat7g055720 Pisum sativum HOM05D003612 ORTHO05D004323 6.0e-81 305.1 288 57.3
Ca_08432_v3 Cicer arietinum L. HOM05D003612 ORTHO05D004323 7.9e-81 304.7 287 58.2
TPR.G18234 Trifolium pratense HOM05D003612 ORTHO05D004323 1.5e-79 300.4 287 56.8
Psat3g074360 Pisum sativum HOM05D003612 ORTHO05D004323 3.4e-76 289.3 285 56.1
Medtr8g090105 Medicago truncatula HOM05D003612 ORTHO05D004323 1.3e-75 287.3 288 55.6
arahy.Tifrunner.gnm1.ann1.65NHSX Arachis hypogaea HOM05D003612 ORTHO05D004323 3.5e-73 279.3 284 55.3
arahy.Tifrunner.gnm1.ann1.GM1CB9 Arachis hypogaea HOM05D003612 ORTHO05D004323 4.6e-73 278.9 284 55.3
Lalb_Chr20g0110641 Lupinus albus HOM05D003612 ORTHO05D004323 1.9e-66 256.9 290 51.7
Phvul.007G088100 Phaseolus vulgaris HOM05D003612 ORTHO05D004323 4.6e-65 252.3 231 59.7
Lj6g0010730 Lotus japonicus HOM05D003612 ORTHO05D004323 1.2e-60 237.7 249 53.4
Gohir.A01G194000 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.5e-52 210.7 275 41.5
Dinv02797 Davidia involucrata HOM05D003612 ORTHO05D004323 2.0e-52 210.3 283 42.0
QL07p002913 Quercus lobata HOM05D003612 ORTHO05D004323 4.5e-52 209.1 278 42.8
Gorai.002G227800 Gossypium raimondii HOM05D003612 ORTHO05D004323 7.7e-52 208.4 275 41.1
QL11p026785 Quercus lobata HOM05D003612 ORTHO05D004323 6.5e-51 205.3 278 42.4
CSS0036075 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 1.1e-50 204.5 283 42.4
Manes.04G104200 Manihot esculenta HOM05D003612 ORTHO05D004323 1.1e-50 204.5 286 42.7
Potri.017G142200 Populus trichocarpa HOM05D003612 ORTHO05D004323 9.4e-50 201.4 275 40.7
Hund23474 Selenicereus undatus HOM05D003612 ORTHO05D004323 2.1e-49 200.3 285 41.4
Eucgr.A02322 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.6e-49 199.5 271 41.3
Eucgr.B02734 Eucalyptus grandis HOM05D003612 ORTHO05D004323 3.6e-49 199.5 271 41.3
Lj2A386T88 Lonicera japonica HOM05D003612 ORTHO05D004323 3.6e-49 199.5 283 40.3
PGR004G2683 Punica granatum HOM05D003612 ORTHO05D004323 3.6e-49 199.5 274 42.0
GSVIVG01033242001 Vitis vinifera HOM05D003612 ORTHO05D004323 3.6e-49 199.5 287 41.8
Ciclev10005938m.g Citrus clementina HOM05D003612 ORTHO05D004323 6.1e-49 198.7 277 43.3
MBI16_g21161_MAGBIO Magnolia biondii HOM05D003612 ORTHO05D004323 2.3e-48 196.8 280 42.5
CiPaw.09G039700 Carya illinoinensis HOM05D003612 ORTHO05D004323 3.0e-48 196.4 279 43.4
Sabra17G0119100 Salix brachista HOM05D003612 ORTHO05D004323 3.9e-48 196.1 275 38.9
TWI53G1732 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 3.9e-48 196.1 285 41.4
CsaV3_4G027280 Cucumis sativus L. HOM05D003612 ORTHO05D004323 5.1e-48 195.7 283 40.3
MELO3C025231.2 Cucumis melo HOM05D003612 ORTHO05D004323 1.5e-47 194.1 281 39.5
ClCG04G006280 Citrullus lanatus HOM05D003612 ORTHO05D004323 4.4e-47 192.6 283 39.2
Rhsim04G0105800 Rhododendron simsii HOM05D003612 ORTHO05D004323 4.4e-47 192.6 272 40.4
Actinidia22794 Actinidia chinensis HOM05D003612 ORTHO05D004323 7.4e-47 191.8 274 40.5
Dinv39651 Davidia involucrata HOM05D003612 ORTHO05D004323 9.7e-47 191.4 283 41.0
Sed0024079 Sechium edule HOM05D003612 ORTHO05D004323 2.2e-46 190.3 276 40.6
Cfa016791 Carpinus fangiana HOM05D003612 ORTHO05D004323 3.7e-46 189.5 278 40.3
Hund15698 Selenicereus undatus HOM05D003612 ORTHO05D004323 6.3e-46 188.7 275 40.4
Oeu023123.1 Olea europaea HOM05D003612 ORTHO05D004323 5.3e-45 185.7 292 41.1
TAR369G0285 Trochodendron aralioides HOM05D003612 ORTHO05D004323 5.3e-45 185.7 284 38.7
Haze_19817 Corylus avellana HOM05D003612 ORTHO05D004323 1.2e-44 184.5 279 39.8
COL.COLO4_19254 Corchorus olitorius HOM05D003612 ORTHO05D004323 2.0e-44 183.7 275 37.8
Haze_19820 Corylus avellana HOM05D003612 ORTHO05D004323 5.9e-44 182.2 279 39.4
Nn8g39441 Nelumbo nucifera HOM05D003612 ORTHO05D004323 5.9e-44 182.2 277 40.1
SalBow1G2865 Salvia bowleyana HOM05D003612 ORTHO05D004323 5.9e-44 182.2 273 40.3
ClCG10G015700 Citrullus lanatus HOM05D003612 ORTHO05D004323 7.7e-44 181.8 283 37.8
Migut.B00971 Erythranthe guttata HOM05D003612 ORTHO05D004323 7.7e-44 181.8 270 39.6
COL.COLO4_22302 Corchorus olitorius HOM05D003612 ORTHO05D004323 1.0e-43 181.4 275 38.2
Nn1g01643 Nelumbo nucifera HOM05D003612 ORTHO05D004323 1.0e-43 181.4 284 40.1
Oeu008170.1 Olea europaea HOM05D003612 ORTHO05D004323 1.3e-43 181.0 273 40.3
Cpa.g.sc182.7 Carica papaya HOM05D003612 ORTHO05D004323 1.7e-43 180.6 282 37.9
PSO648G0079 Papaver somniferum HOM05D003612 ORTHO05D004323 1.7e-43 180.6 284 39.8
Thecc.05G151100 Theobroma cacao HOM05D003612 ORTHO05D004323 2.2e-43 180.3 231 42.9
vmacro09060 Vaccinium macrocarpon HOM05D003612 ORTHO05D004323 5.0e-43 179.1 272 37.9
Aa31LG10G12210 Aethionema arabicum HOM05D000708 ORTHO05D004323 8.5e-43 178.3 286 39.5
TWI74G0690 Tripterygium wilfordii HOM05D003612 ORTHO05D004323 8.5e-43 178.3 284 38.7
MSTRG.26129 Avicennia marina HOM05D003612 ORTHO05D004323 1.1e-42 177.9 273 37.7
MD12G1080400 Malus domestica HOM05D003612 ORTHO05D004323 2.5e-42 176.8 270 39.3
Migut.K00098 Erythranthe guttata HOM05D003612 ORTHO05D004323 3.2e-42 176.4 270 38.5
AT3G57360 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 1.2e-41 174.5 287 39.7
SHI13547 Sapria himalayana HOM05D003612 ORTHO05D004323 1.2e-41 174.5 258 41.9
AUR62005836 Chenopodium quinoa HOM05D000760 ORTHO05D004323 1.6e-41 174.1 273 40.7
AUR62029731 Chenopodium quinoa HOM05D003612 ORTHO05D004323 2.1e-41 173.7 272 38.6
Prupe.7G055000 Prunus persica HOM05D003612 ORTHO05D004323 2.7e-41 173.3 277 37.9
Aa31LG1G13790 Aethionema arabicum HOM05D003612 ORTHO05D004323 4.7e-41 172.6 287 39.7
Glyma.03G134401 Glycine max HOM05D003612 ORTHO05D004323 1.0e-40 171.4 116 74.1
AL5G38900 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 1.4e-40 171.0 287 38.0
CANSAT80G2682 Cannabis sativa HOM05D003612 ORTHO05D004323 1.4e-40 171.0 282 37.6
DCAR_030722 Daucus carota HOM05D003612 ORTHO05D004323 1.4e-40 171.0 283 36.4
FAN14G3261 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.8e-40 170.6 278 38.8
Nitab4.5_0004416g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 2.3e-40 170.2 271 37.6
Cc06_g17860 Coffea canephora HOM05D003612 ORTHO05D004323 3.0e-40 169.9 273 37.0
FvH4_6g24380 Fragaria vesca HOM05D003612 ORTHO05D004323 3.9e-40 169.5 263 38.8
RcHm_v2.0_Chr3g0483371 Rosa chinensis HOM05D003612 ORTHO05D004323 3.9e-40 169.5 270 37.4
Carub.0005s2421 Capsella rubella HOM05D003612 ORTHO05D004323 5.2e-40 169.1 287 36.9
Aqoxy7G03834 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 6.7e-40 168.7 286 36.7
AUR62032829 Chenopodium quinoa HOM05D003612 ORTHO05D004323 6.7e-40 168.7 268 38.8
PSO210G3983 Papaver somniferum HOM05D003612 ORTHO05D004323 6.7e-40 168.7 276 37.7
Actinidia17229 Actinidia chinensis HOM05D003612 ORTHO05D004323 8.8e-40 168.3 259 37.8
Nitab4.5_0000082g0220 Nicotiana tabacum HOM05D003612 ORTHO05D004323 8.8e-40 168.3 275 37.1
EL10Ac6g13255 Beta vulgaris HOM05D003612 ORTHO05D004323 1.1e-39 167.9 278 38.5
FAN09G3838 Fragaria x ananassa HOM05D003395 ORTHO05D004087 1.1e-39 167.9 278 38.8
CARHR167560 Cardamine hirsuta HOM05D003612 ORTHO05D004323 1.5e-39 167.5 279 39.1
GSVIVG01033245001 Vitis vinifera HOM05D003612 ORTHO05D004323 1.5e-39 167.5 139 58.3
CAN.G641.26 Capsicum annuum HOM05D003612 ORTHO05D004323 2.0e-39 167.2 284 35.6
Sp5g05240 Schrenkiella parvula HOM05D003612 ORTHO05D004323 2.0e-39 167.2 289 39.4
Sopen10g029960 Solanum pennellii HOM05D003612 ORTHO05D004323 4.4e-39 166.0 284 36.6
Cc04_g15140 Coffea canephora HOM05D003612 ORTHO05D004323 5.7e-39 165.6 270 37.0
Nitab4.5_0000082g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.7e-39 165.6 275 36.4
Os09g0504800 Oryza sativa ssp. japonica HOM05D003612 ORTHO05D004323 5.7e-39 165.6 276 35.5
Aqoxy7G03372 Aquilegia oxysepala HOM05D003612 ORTHO05D004323 7.4e-39 165.2 275 34.9
FAN02G1760 Fragaria x ananassa HOM05D003612 ORTHO05D004323 7.4e-39 165.2 263 38.4
SGA_v2.0_scaffold94G28492 Striga asiatica HOM05D003612 ORTHO05D004323 7.4e-39 165.2 289 37.0
BraA04t16040Z Brassica rapa HOM05D003612 ORTHO05D004323 9.7e-39 164.9 286 37.4
Glyma.19G136600 Glycine max HOM05D003612 ORTHO05D004323 1.3e-38 164.5 85 92.9
Solyc10g079310.2 Solanum lycopersicum HOM05D003612 ORTHO05D004323 2.8e-38 163.3 284 35.6
Nitab4.5_0000912g0130 Nicotiana tabacum HOM05D003612 ORTHO05D004323 3.7e-38 162.9 271 36.5
PGSC0003DMG400008168 Solanum tuberosum HOM05D003612 ORTHO05D004323 3.7e-38 162.9 284 35.2
HanXRQChr04g0113101 Helianthus annuus HOM05D003612 ORTHO05D004323 4.8e-38 162.5 234 39.7
AL3G11670 Arabidopsis lyrata HOM05D003612 ORTHO05D004323 6.3e-38 162.2 276 36.2
Carub.0001s3481 Capsella rubella HOM05D003612 ORTHO05D004323 6.3e-38 162.2 287 36.6
Thhalv10006455m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 8.2e-38 161.8 273 37.7
BcaC02g09930 Brassica carinata HOM05D003612 ORTHO05D004323 1.1e-37 161.4 286 37.4
C04p35070 Brassica napus HOM05D003612 ORTHO05D004323 1.1e-37 161.4 286 37.4
BolC4t25063H Brassica oleracea HOM05D003612 ORTHO05D004323 1.1e-37 161.4 286 37.4
THA.LOC104802043 Tarenaya hassleriana HOM05D003612 ORTHO05D004323 1.4e-37 161.0 281 35.9
Zm00001eb102310 Zea mays HOM05D003612 ORTHO05D004323 2.4e-37 160.2 272 33.1
ATR0829G008 Amborella trichopoda HOM05D003612 ORTHO05D004323 4.1e-37 159.5 277 39.4
Nitab4.5_0010316g0020 Nicotiana tabacum HOM05D003612 ORTHO05D004323 5.3e-37 159.1 275 35.3
HPP92_020032 Vanilla planifolia HOM05D003612 ORTHO05D004323 1.6e-36 157.5 254 36.6
PSO210G2319 Papaver somniferum HOM05D003612 ORTHO05D004323 2.0e-36 157.1 285 34.7
Peaxi162Scf00059g01812 Petunia axillaris HOM05D003612 ORTHO05D004323 3.5e-36 156.4 286 33.6
Ah.03g134750 Amaranthus hybridus HOM05D003612 ORTHO05D004323 1.3e-35 154.5 268 37.3
A09p50260 Brassica napus HOM05D003612 ORTHO05D004323 2.9e-35 153.3 288 35.8
BraA09t40476Z Brassica rapa HOM05D003612 ORTHO05D004323 2.9e-35 153.3 288 35.8
CSS0050265 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.9e-35 153.3 218 39.9
ECA236G0894 Erigeron canadensis HOM05D003612 ORTHO05D004323 5.0e-35 152.5 273 35.5
Thhalv10009908m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 1.1e-34 151.4 292 36.0
PSO339G0745 Papaver somniferum HOM05D003612 ORTHO05D004323 1.1e-34 151.4 249 36.1
A04p03190 Brassica napus HOM05D003612 ORTHO05D004323 1.9e-34 150.6 310 34.5
PSO339G0740 Papaver somniferum HOM05D003612 ORTHO05D004323 1.9e-34 150.6 249 36.5
Lsat_1_v5_gn_7_11501 Lactuca sativa HOM05D000048 ORTHO05D000436 2.5e-34 150.2 237 35.9
unitig_52.g17667 Utricularia gibba HOM05D003612 ORTHO05D004323 4.2e-34 149.4 287 33.8
FAN24G0412 Fragaria x ananassa HOM05D003786 ORTHO05D004375 5.5e-34 149.1 284 32.7
Thhalv10009639m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 7.2e-34 148.7 272 36.4
Lj1C1128T4 Lonicera japonica HOM05D003612 ORTHO05D004323 2.7e-33 146.7 136 51.5
C08p32750 Brassica napus HOM05D003612 ORTHO05D004323 6.1e-33 145.6 288 34.7
BolC8t50886H Brassica oleracea HOM05D003612 ORTHO05D004323 6.1e-33 145.6 288 34.7
FvH4_2g14101 Fragaria vesca HOM05D003786 ORTHO05D004375 1.4e-32 144.4 284 32.4
MELO3C030712.2 Cucumis melo HOM05D003612 ORTHO05D004323 2.6e-31 140.2 140 52.9
AT3G02370 Arabidopsis thaliana HOM05D003612 ORTHO05D004323 4.4e-31 139.4 232 35.8
BcaB02g08320 Brassica carinata HOM05D003612 ORTHO05D004323 9.7e-31 138.3 241 35.3
Thhalv10008553m.g Eutrema salsugineum HOM05D003612 ORTHO05D004323 2.8e-30 136.7 233 35.2
Duzib128G0868 Durio zibethinus HOM05D003612 ORTHO05D004323 8.2e-30 135.2 276 33.3
Nn2g10440 Nelumbo nucifera HOM05D003612 ORTHO05D004323 8.2e-30 135.2 119 57.1
BcaC07g40390 Brassica carinata HOM05D003612 ORTHO05D004323 1.4e-29 134.4 233 37.3
Sopen03g026320 Solanum pennellii HOM05D003612 ORTHO05D004323 2.4e-29 133.7 227 34.4
Ah.02g117470 Amaranthus hybridus HOM05D003612 ORTHO05D004323 2.0e-28 130.6 164 44.5
SGA_v2.0_scaffold1G00588 Striga asiatica HOM05D003612 ORTHO05D004323 1.3e-27 127.9 272 31.2
Gohir.D01G184300 Gossypium hirsutum HOM05D003612 ORTHO05D004323 1.7e-27 127.5 199 35.2
Dinv02795 Davidia involucrata HOM05D003612 ORTHO05D004323 2.9e-27 126.7 245 31.8
CDE09G0671 Ceratophyllum demersum HOM05D003612 ORTHO05D004323 5.0e-27 125.9 278 32.0
BolC8t50888H Brassica oleracea HOM05D003612 ORTHO05D004323 3.2e-26 123.2 281 34.5
Prupe.5G048800 Prunus persica HOM05D003612 ORTHO05D004323 5.5e-26 122.5 233 32.2
Sc04g0007910 Simmondsia chinensis HOM05D003612 ORTHO05D004323 2.7e-25 120.2 200 34.0
TAR369G0664 Trochodendron aralioides HOM05D003612 ORTHO05D004323 9.8e-23 111.7 198 32.8
Pp3c3_37380 Physcomitrium patens HOM05D003612 ORTHO05D004323 1.3e-22 111.3 280 28.2
Sopen03g026330 Solanum pennellii HOM05D003612 ORTHO05D004323 1.3e-22 111.3 109 47.7
RcHm_v2.0_Chr1g0361791 Rosa chinensis HOM05D003612 ORTHO05D004323 3.7e-22 109.8 115 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1563 Anthoceros agrestis HOM05D003612 ORTHO05D004323 1.1e-21 108.2 255 30.6
PSO339G6630 Papaver somniferum HOM05D003612 ORTHO05D004323 2.4e-21 107.1 238 31.1
Mapoly0007s0121 Marchantia polymorpha HOM05D003612 ORTHO05D004323 5.4e-21 105.9 275 29.8
PGSC0003DMG400011936 Solanum tuberosum HOM05D003612 ORTHO05D004323 4.5e-20 102.8 196 31.6
Duzib093G1009 Durio zibethinus HOM05D003612 ORTHO05D004323 5.9e-20 102.4 74 60.8
Eucgr.A02319 Eucalyptus grandis HOM05D003612 ORTHO05D004323 8.6e-19 98.6 103 49.5
Peaxi162Scf00244g00019 Petunia axillaris HOM05D003612 ORTHO05D004323 3.2e-18 96.7 197 30.5
SMO364G0364 Selaginella moellendorffii HOM05D003612 ORTHO05D004323 1.2e-17 94.7 99 41.4
CSS0020602 Camellia sinensis var. sinensis HOM05D003612 ORTHO05D004323 2.8e-17 93.6 193 30.6
SEGI_02185 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 4.7e-17 92.8 203 29.6
Nitab4.5_0001598g0060 Nicotiana tabacum HOM05D003612 ORTHO05D004323 6.8e-16 89.0 127 40.9
BcaNung07094 Brassica carinata HOM05D003612 ORTHO05D004323 2.8e-14 83.6 189 30.2
Cfa015703 Carpinus fangiana HOM05D003612 ORTHO05D004323 7.8e-12 75.5 71 46.5
MD14G1076600 Malus domestica HOM05D003612 ORTHO05D004323 7.8e-12 75.5 263 27.4
RcHm_v2.0_Chr6g0276201 Rosa chinensis HOM05D003786 ORTHO05D004375 2.3e-11 73.9 94 41.5
CBR_g2822 Chara braunii HOM05D000019 ORTHO05D000048 2.9e-11 73.6 167 29.3
QL07p002858 Quercus lobata HOM05D003612 ORTHO05D004323 2.9e-11 73.6 196 26.5
PSO339G4790 Papaver somniferum HOM05D003612 ORTHO05D004323 1.2e-09 68.2 184 25.5
PGSC0003DMG400013536 Solanum tuberosum HOM05D003612 ORTHO05D004323 8.0e-09 65.5 87 43.7
Mapoly0119s0049 Marchantia polymorpha HOM05D003612 ORTHO05D004323 4.0e-08 63.2 242 30.6
C08p32770 Brassica napus HOM05D003612 ORTHO05D004323 2.6e-07 60.5 90 44.4
SEGI_36865 Sequoiadendron giganteum HOM05D003612 ORTHO05D004323 9.8e-07 58.5 78 46.2
Lj1A1127T48 Lonicera japonica HOM05D003612 ORTHO05D004323 2.2e-06 57.4 41 61.0
BcaNung07092 Brassica carinata HOM05D003612 ORTHO05D004323 4.9e-06 56.2 42 57.1


User provided reference genes

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