Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 1.3e-270 936.0 569 100.0
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 2.8e-196 689.1 587 76.1
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 3.0e-169 599.4 570 69.6
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.2e-156 556.6 596 61.7
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 8.1e-151 538.1 596 62.6
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 5.8e-149 531.9 583 60.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.0e-145 521.2 570 58.9
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.8e-137 493.8 574 62.2
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 8.8e-121 438.3 574 50.7
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 4.3e-120 436.0 573 53.6
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 2.4e-118 430.3 633 46.8
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 1.0e-116 424.9 614 51.6
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 5.0e-116 422.5 572 51.6
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 8.5e-116 421.8 590 48.1
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 3.2e-115 419.9 538 52.6
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 3.6e-114 416.4 580 55.2
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 1.8e-113 414.1 566 46.3
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.0e-113 413.3 591 50.1
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 6.9e-110 402.1 570 50.5
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 2.2e-108 397.1 578 48.8
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 7.2e-107 392.1 568 50.7
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 3.6e-106 389.8 586 46.8
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 3.6e-106 389.8 591 47.5
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 1.4e-105 387.9 582 49.5
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 2.3e-105 387.1 599 47.6
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 5.2e-105 386.0 590 47.1
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 5.7e-104 382.5 595 47.2
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 9.7e-104 381.7 614 48.5
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 2.2e-103 380.6 583 49.2
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 4.8e-103 379.4 607 51.6
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 1.8e-102 377.5 581 50.4
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 1.2e-101 374.8 608 47.0
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 3.5e-101 373.2 568 46.8
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 4.5e-101 372.9 567 49.6
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 7.7e-101 372.1 617 48.6
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 1.7e-100 370.9 592 52.2
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 2.9e-100 370.2 574 45.1
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 6.5e-100 369.0 592 46.5
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 8.5e-100 368.6 615 43.3
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 1.1e-99 368.2 606 49.8
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.9e-99 367.5 569 48.3
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 6.1e-98 362.5 580 48.6
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 2.3e-97 360.5 572 42.5
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 8.8e-97 358.6 571 47.8
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 7.5e-96 355.5 529 46.3
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 7.5e-96 355.5 587 47.4
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 1.3e-95 354.8 567 43.9
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 2.2e-95 354.0 529 46.7
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 2.8e-95 353.6 622 43.6
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.8e-95 353.6 538 43.5
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 1.8e-94 350.9 589 45.5
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 9.1e-94 348.6 678 42.5
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 2.7e-93 347.1 599 42.9
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 3.5e-93 346.7 622 46.0
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 4.5e-93 346.3 567 46.9
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 1.0e-92 345.1 605 43.3
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 1.3e-92 344.7 582 44.5
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 2.2e-92 344.0 590 45.8
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.9e-92 343.6 584 48.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 3.8e-92 343.2 590 44.7
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 6.5e-92 342.4 584 48.3
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 1.1e-91 341.7 572 46.5
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.1e-91 341.7 550 46.9
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.9e-91 340.9 586 47.6
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 2.5e-91 340.5 568 48.1
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 9.4e-91 338.6 574 46.9
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.6e-90 337.8 610 41.3
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.6e-90 337.8 589 46.5
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 3.0e-89 333.6 607 38.7
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 5.7e-88 329.3 570 46.8
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 9.8e-88 328.6 505 46.5
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 2.2e-87 327.4 570 45.1
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 2.2e-87 327.4 570 45.1
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 2.2e-87 327.4 593 44.9
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 1.4e-86 324.7 574 46.2
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 3.8e-84 316.6 569 46.6
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.5e-83 314.7 188 94.7
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 1.2e-80 305.1 577 41.6
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 2.0e-80 304.3 612 37.6
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 4.4e-80 303.1 522 45.6
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.8e-79 300.4 573 43.8
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 4.9e-79 299.7 578 42.6
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 6.3e-79 299.3 578 43.4
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 3.1e-78 297.0 574 44.9
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 4.1e-78 296.6 228 66.7
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 2.0e-77 294.3 572 42.8
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 2.3e-76 290.8 569 43.2
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 5.6e-75 286.2 638 43.6
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.2e-74 285.0 537 40.4
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.4e-73 281.6 577 43.7
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 8.9e-73 278.9 497 43.1
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 6.4e-71 272.7 282 57.1
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.4e-70 271.6 244 59.8
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 9.5e-67 258.8 216 67.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 1.4e-65 255.0 539 42.1
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 8.9e-65 252.3 522 41.4
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 7.5e-64 249.2 588 37.8
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 1.7e-63 248.1 394 47.0
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 7.0e-62 242.7 158 83.5
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 6.0e-61 239.6 234 56.8
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 2.5e-59 234.2 226 54.9
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 9.5e-59 232.3 506 39.3
arahy.Tifrunner.gnm1.ann1.MH0ZUI Arachis hypogaea HOM05D004380 ORTHO05D005134 8.1e-58 229.2 113 92.0
TPR.G23111 Trifolium pratense HOM05D004380 ORTHO05D005134 1.4e-57 228.4 118 86.4
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.3e-55 221.9 583 34.0
TPR.G20578 Trifolium pratense HOM05D004380 ORTHO05D005134 4.9e-55 219.9 113 86.7
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 3.2e-54 217.2 158 82.3
Cpa.g.sc69.32 Carica papaya HOM05D004380 ORTHO05D005134 5.4e-54 216.5 118 83.1
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.9e-52 210.3 271 45.4
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 6.6e-52 209.5 118 78.8
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.5e-51 208.4 168 63.1
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 2.5e-51 207.6 244 49.6
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 5.6e-51 206.5 167 62.9
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 2.8e-50 204.1 213 51.6
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 5.2e-49 199.9 179 58.7
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 4.4e-48 196.8 203 54.2
Aa31LG9G6660 Aethionema arabicum HOM05D004380 ORTHO05D005134 9.9e-48 195.7 118 74.6
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.4e-46 191.0 215 48.8
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 7.1e-46 189.5 237 48.1
DCAR_007574 Daucus carota HOM05D004380 ORTHO05D005134 3.9e-44 183.7 119 71.4
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 8.7e-44 182.6 493 39.4
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.5e-43 181.0 215 47.9
CSS0001415 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.8e-39 167.2 86 83.7
CSS0037993 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.8e-39 167.2 86 83.7
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 8.4e-39 166.0 443 37.0
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 3.4e-32 144.1 146 57.5
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 9.9e-32 142.5 144 63.9
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.7e-31 141.7 413 42.1
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 1.7e-31 141.7 413 42.1
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 1.9e-30 138.3 512 28.5
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 2.1e-29 134.8 283 43.8
MCO15G532 Micromonas commoda HOM05D004380 ORTHO05D005134 7.9e-29 132.9 252 34.1
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 3.9e-28 130.6 311 38.9
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 6.7e-28 129.8 316 44.9
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.9e-27 128.3 146 58.2
Cre01.g003487 Chlamydomonas reinhardtii HOM05D004380 ORTHO05D005134 4.3e-27 127.1 195 39.0
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 4.3e-27 127.1 289 38.4
Sp5g21510 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.6e-26 125.2 98 65.3
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 1.8e-25 121.7 182 43.4
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 2.2e-23 114.8 183 49.7
PRCOL_00005638 Prasinoderma coloniale HOM05D004380 ORTHO05D005134 1.0e-20 105.9 201 35.3
Dinv40656 Davidia involucrata HOM05D000301 ORTHO05D000303 2.5e-19 101.3 56 76.8
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.1e-17 94.4 98 57.1
AL3G52660 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 2.0e-16 91.7 66 60.6
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 7.1e-14 83.2 86 57.0
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 7.1e-14 83.2 128 41.4
Medtr4g081725 Medicago truncatula HOM05D004380 ORTHO05D005134 7.9e-13 79.7 68 64.7
Cfa026589 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.8e-12 78.6 115 39.1
C05p31200 Brassica napus HOM05D004380 ORTHO05D005134 3.3e-11 74.3 64 60.9
TPR.G23078 Trifolium pratense HOM05D004380 ORTHO05D005134 1.2e-08 65.9 42 81.0
vmacro21374 Vaccinium macrocarpon HOM05D000230 ORTHO05D011064 5.0e-07 60.5 48 64.6


User provided reference genes

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