Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 1.1e-119 435.3 465 100.0
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 1.5e-81 308.5 471 87.5
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 2.1e-70 271.6 463 78.8
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 7.1e-47 193.4 478 75.9
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 6.0e-46 190.3 183 54.1
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 1.0e-45 189.5 183 55.2
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 1.9e-44 185.3 184 55.4
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 4.1e-42 177.6 131 67.9
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.0e-40 172.9 194 51.5
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.3e-40 172.6 184 55.4
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 2.5e-39 168.3 189 55.0
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 3.0e-37 161.4 183 47.0
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 4.3e-36 157.5 159 50.9
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 7.4e-36 156.8 187 47.6
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 7.4e-36 156.8 132 54.5
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 1.1e-34 152.9 133 55.6
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 4.1e-34 151.0 193 44.6
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 1.1e-31 142.9 204 40.2
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 4.6e-30 137.5 133 47.4
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 3.9e-29 134.4 133 47.4
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 5.1e-29 134.0 132 48.5
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 1.1e-28 132.9 143 49.0
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 2.0e-28 132.1 143 46.2
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 7.4e-28 130.2 201 40.8
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 7.4e-28 130.2 134 45.5
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 7.4e-28 130.2 186 38.7
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 1.7e-27 129.0 191 41.4
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 1.7e-27 129.0 134 50.0
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 3.7e-27 127.9 120 49.2
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 1.1e-26 126.3 171 43.3
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 1.1e-26 126.3 184 39.1
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 3.1e-26 124.8 133 45.1
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 6.9e-26 123.6 170 38.8
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 6.9e-26 123.6 129 46.5
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 9.1e-26 123.2 162 43.2
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 1.2e-25 122.9 133 48.1
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 3.4e-25 121.3 125 48.8
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 3.4e-25 121.3 134 42.5
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.0e-24 119.8 149 43.0
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 1.4e-23 115.9 126 45.2
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 1.6e-22 112.5 134 41.8
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 2.7e-22 111.7 137 45.3
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.7e-22 111.7 137 45.3
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 3.6e-22 111.3 148 40.5
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 4.7e-22 110.9 133 43.6
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 6.1e-22 110.5 189 36.5
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 7.9e-22 110.2 133 39.8
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 1.4e-21 109.4 126 46.0
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 3.9e-21 107.8 126 45.2
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 6.7e-21 107.1 186 33.9
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 1.1e-20 106.3 128 39.8
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 4.4e-20 104.4 136 42.6
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 4.4e-20 104.4 181 34.8
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 5.7e-20 104.0 191 36.1
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 5.7e-20 104.0 189 31.7
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 5.7e-20 104.0 189 31.7
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 7.4e-20 103.6 184 34.2
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 9.7e-20 103.2 133 38.3
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 1.3e-19 102.8 133 38.3
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 1.7e-19 102.4 133 39.1
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 2.2e-19 102.1 138 37.7
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 4.8e-19 100.9 140 40.0
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.4e-18 99.4 155 37.4
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.4e-18 99.4 122 35.2
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 1.8e-18 99.0 133 35.3
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.4e-18 98.6 194 35.1
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 2.4e-18 98.6 133 35.3
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 3.1e-18 98.2 137 41.6
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 7.0e-18 97.1 194 34.5
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 9.1e-18 96.7 175 34.9
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 9.1e-18 96.7 153 37.3
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 9.1e-18 96.7 133 34.6
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 1.2e-17 96.3 195 34.9
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 3.5e-17 94.7 145 37.2
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 7.7e-17 93.6 137 41.6
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.3e-16 92.8 132 34.1
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 1.7e-16 92.4 136 40.4
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.2e-16 92.0 129 38.8
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 2.2e-16 92.0 85 54.1
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 2.9e-16 91.7 133 39.8
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 5.0e-16 90.9 138 37.7
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 1.5e-15 89.4 137 40.1
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 1.5e-15 89.4 137 40.1
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 9.4e-15 86.7 144 35.4
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 4.7e-14 84.3 135 35.6
ATR0782G035 Amborella trichopoda HOM05D006287 ORTHO05D008192 8.8e-13 80.1 133 31.6
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 1.5e-12 79.3 121 35.5
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 1.5e-12 79.3 85 50.6
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.0e-12 79.0 125 34.4
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 1.3e-11 76.3 107 37.4
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 2.2e-11 75.5 151 31.8
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 2.2e-11 75.5 77 41.6
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 2.4e-10 72.0 113 33.6
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 3.1e-10 71.6 138 26.1
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 3.1e-10 71.6 128 31.2
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 4.1e-10 71.2 132 27.3
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 2.7e-09 68.6 110 40.9
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 3.5e-09 68.2 119 34.5
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 7.7e-09 67.0 121 29.8
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 7.7e-09 67.0 121 32.2
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 2.2e-08 65.5 84 41.7
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 2.9e-08 65.1 138 26.8
MELO3C018417.2 Cucumis melo HOM05D007083 ORTHO05D008801 8.5e-08 63.5 184 32.1
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 2.5e-07 62.0 65 41.5
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 3.2e-07 61.6 61 45.9
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 1.2e-06 59.7 73 46.6
ECA233G4604 Erigeron canadensis HOM05D005914 ORTHO05D007361 4.7e-06 57.8 53 45.3


User provided reference genes

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