Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 5.6e-127 457.6 230 100.0
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 2.2e-99 365.9 237 81.0
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.3e-91 340.1 236 72.5
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 1.3e-75 287.0 219 68.0
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 8.8e-72 274.2 231 58.0
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 2.6e-71 272.7 232 57.8
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 4.1e-69 265.4 240 55.4
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.3e-67 260.4 231 55.0
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 1.5e-66 256.9 232 53.9
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 1.9e-66 256.5 232 53.9
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 3.3e-66 255.8 238 52.1
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.0e-64 250.8 231 55.0
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.8e-64 248.1 236 53.8
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 5.7e-63 245.0 233 52.8
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 4.9e-62 241.9 240 51.7
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.9e-62 241.9 232 52.2
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 6.3e-62 241.5 231 53.2
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-61 240.7 232 52.6
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.1e-61 240.7 240 50.8
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 1.4e-61 240.4 230 50.9
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.4e-61 240.4 240 51.2
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 2.4e-61 239.6 231 52.8
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.1e-61 239.2 240 51.2
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.1e-61 239.2 231 51.1
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 7.0e-61 238.0 240 51.2
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 1.6e-60 236.9 230 51.3
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 2.7e-60 236.1 231 49.8
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 4.5e-60 235.3 230 50.9
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 1.0e-59 234.2 231 51.5
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 2.3e-59 233.0 231 48.9
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.3e-59 233.0 234 50.0
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 2.3e-59 233.0 231 51.5
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 8.6e-59 231.1 234 49.1
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 8.6e-59 231.1 231 48.9
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.9e-58 229.9 231 49.8
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 5.6e-58 228.4 234 48.7
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 1.2e-57 227.3 231 47.2
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.1e-57 226.5 239 48.5
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 3.6e-57 225.7 230 46.5
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 6.1e-57 224.9 231 47.2
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 1.0e-56 224.2 231 46.3
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.4e-56 223.8 231 47.2
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 2.3e-56 223.0 231 49.8
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 3.1e-56 222.6 231 49.8
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 4.0e-56 222.2 233 47.6
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 4.0e-56 222.2 230 47.8
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 5.2e-56 221.9 231 50.2
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 6.8e-56 221.5 231 45.5
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 8.9e-56 221.1 237 48.1
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 1.2e-55 220.7 212 47.6
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.4e-55 219.2 228 48.2
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 3.7e-54 215.7 234 45.3
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 4.9e-54 215.3 233 45.9
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 6.4e-54 214.9 234 45.3
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.3e-54 214.5 237 45.1
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 8.3e-54 214.5 228 45.6
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 8.3e-54 214.5 228 46.9
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-53 213.8 234 45.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 1.4e-53 213.8 234 45.3
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 2.4e-53 213.0 230 43.9
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 3.2e-53 212.6 231 45.0
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 7.0e-53 211.5 234 47.0
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 1.6e-52 210.3 229 47.2
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 2.0e-52 209.9 229 44.5
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 3.5e-52 209.1 227 45.8
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 4.6e-52 208.8 200 50.5
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 6.0e-52 208.4 237 46.8
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.8e-52 208.0 235 46.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 1.0e-51 207.6 235 46.4
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.0e-51 207.6 225 46.7
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 1.3e-51 207.2 237 45.6
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.7e-51 206.8 225 45.8
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.7e-51 206.8 227 45.4
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 3.0e-51 206.1 226 44.2
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 6.6e-51 204.9 199 48.2
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 6.6e-51 204.9 228 46.5
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 6.6e-51 204.9 231 43.7
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 1.1e-50 204.1 215 48.4
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 1.5e-50 203.8 229 45.9
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 1.9e-50 203.4 232 46.6
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 2.5e-50 203.0 221 44.8
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 3.3e-50 202.6 224 45.1
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 4.3e-50 202.2 195 50.3
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 1.2e-49 200.7 215 45.1
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 1.6e-49 200.3 231 43.7
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.2e-49 198.4 230 44.8
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.2e-49 198.4 230 44.8
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-48 197.6 230 44.3
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.1e-48 197.6 209 46.4
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.8e-48 196.8 230 44.3
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 1.8e-48 196.8 234 43.2
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 3.1e-48 196.1 230 44.3
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 3.1e-48 196.1 233 44.2
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 6.8e-48 194.9 235 44.3
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 8.9e-48 194.5 233 43.8
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 8.9e-48 194.5 228 44.7
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 1.5e-47 193.7 206 44.2
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 2.6e-47 193.0 228 44.3
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 4.4e-47 192.2 232 43.1
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 5.8e-47 191.8 227 44.5
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 7.5e-47 191.4 230 45.7
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 9.8e-47 191.0 223 42.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.7e-46 189.1 228 42.5
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 6.4e-46 188.3 227 44.1
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 5.4e-45 185.3 227 43.6
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 1.6e-44 183.7 215 41.9
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 2.7e-44 183.0 236 42.4
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.5e-44 182.6 198 43.4
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 6.0e-44 181.8 229 39.3
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 7.8e-44 181.4 233 41.6
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 7.8e-44 181.4 233 41.6
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 1.0e-43 181.0 233 41.6
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.3e-43 180.6 195 47.2
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 1.7e-43 180.3 233 41.2
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 1.7e-43 180.3 233 41.2
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 3.0e-43 179.5 230 43.5
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 3.0e-43 179.5 218 39.9
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 8.6e-43 177.9 233 41.2
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 3.3e-42 176.0 216 40.7
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 7.3e-42 174.9 230 41.7
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 7.3e-42 174.9 210 45.2
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 7.3e-42 174.9 137 64.2
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 9.5e-42 174.5 233 40.8
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.2e-41 171.8 227 43.2
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 8.1e-41 171.4 232 42.2
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 1.8e-40 170.2 232 40.9
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 2.3e-40 169.9 188 44.7
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 3.1e-40 169.5 154 51.3
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 4.0e-40 169.1 174 45.4
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 2.0e-39 166.8 229 41.0
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 1.3e-38 164.1 227 39.6
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 1.7e-38 163.7 229 41.0
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.1e-37 161.0 200 41.5
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 2.4e-37 159.8 200 41.0
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 7.1e-37 158.3 229 40.2
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 1.2e-36 157.5 150 50.7
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 1.6e-36 157.1 229 39.7
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.6e-36 157.1 231 37.7
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.5e-36 156.0 215 38.1
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 4.6e-36 155.6 154 49.4
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 6.0e-36 155.2 229 40.6
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 6.0e-36 155.2 165 44.8
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 1.9e-34 150.2 152 46.7
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.6e-34 148.7 182 40.1
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 7.3e-34 148.3 227 35.7
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.6e-33 147.1 185 40.0
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 2.1e-33 146.7 147 50.3
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-33 146.0 234 39.3
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 3.6e-33 146.0 234 39.3
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 6.2e-33 145.2 183 38.8
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 3.1e-32 142.9 231 34.6
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 3.4e-31 139.4 140 47.1
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 7.6e-31 138.3 213 36.6
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 6.6e-27 125.2 203 39.4
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 1.1e-26 124.4 225 33.8
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 2.5e-26 123.2 108 56.5
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 3.3e-26 122.9 161 41.6
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 6.2e-25 118.6 99 59.6
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 2.6e-23 113.2 121 47.9
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 9.9e-23 111.3 115 46.1
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 6.4e-22 108.6 79 63.3
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.1e-20 103.6 165 40.0
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 3.9e-19 99.4 116 42.2
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 3.3e-18 96.3 81 49.4
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.3e-18 95.9 133 43.6
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 7.3e-18 95.1 126 45.2
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.3e-18 95.1 190 34.2
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 6.9e-16 88.6 144 37.5
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.5e-15 87.4 76 51.3
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 4.9e-14 82.4 70 55.7
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 4.6e-12 75.9 90 44.4
Atru.chr1.3033 Acer truncatum HOM05D003762 ORTHO05D004374 1.0e-11 74.7 78 46.2
PSO384G2135 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-11 74.3 101 39.6
PSO384G3622 Papaver somniferum HOM05D003762 ORTHO05D004374 1.3e-11 74.3 100 40.0
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.8e-11 73.9 62 54.8
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 5.1e-11 72.4 92 39.1
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 1.6e-09 67.4 108 31.5
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 2.1e-09 67.0 72 47.2
SEGI_04929 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 1.3e-06 57.8 64 39.1


User provided reference genes

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