Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.07G018400 Glycine max HOM05D002908 ORTHO05D007390 4.7e-191 671.0 332 100.0
Glyma.08G203400 Glycine max HOM05D002908 ORTHO05D007390 4.7e-183 644.4 332 96.7
VMungo0331G0294 Vigna mungo HOM05D002908 ORTHO05D007390 7.5e-181 637.1 332 95.8
Phvul.010G147500 Phaseolus vulgaris HOM05D002908 ORTHO05D007390 1.8e-179 632.5 332 94.9
Medtr8g013660 Medicago truncatula HOM05D002908 ORTHO05D007390 6.4e-172 607.4 331 91.5
Lalb_Chr01g0013051 Lupinus albus HOM05D002908 ORTHO05D007390 1.1e-171 606.7 329 91.8
Ca_11526_v3 Cicer arietinum L. HOM05D002908 ORTHO05D007390 1.4e-171 606.3 331 92.4
TPR.G14821 Trifolium pratense HOM05D002908 ORTHO05D007390 1.0e-169 600.1 329 90.9
arahy.Tifrunner.gnm1.ann1.0NGS5F Arachis hypogaea HOM05D002908 ORTHO05D007390 6.2e-167 590.9 329 88.4
arahy.Tifrunner.gnm1.ann1.E6TYPI Arachis hypogaea HOM05D002908 ORTHO05D007390 6.2e-167 590.9 329 88.4
QL05p021375 Quercus lobata HOM05D002908 ORTHO05D007390 1.3e-161 573.2 327 86.5
Cfa002106 Carpinus fangiana HOM05D002908 ORTHO05D007390 3.9e-161 571.6 324 87.3
CANSAT56G3591 Cannabis sativa HOM05D002908 ORTHO05D007390 2.5e-160 568.9 325 85.2
Thecc.06G094700 Theobroma cacao HOM05D002908 ORTHO05D007390 5.6e-160 567.8 326 86.5
COL.COLO4_30459 Corchorus olitorius HOM05D002908 ORTHO05D007390 8.1e-159 563.9 325 85.2
MD09G1208200 Malus domestica HOM05D002908 ORTHO05D007390 8.1e-159 563.9 330 84.5
Gorai.010G229600 Gossypium raimondii HOM05D002908 ORTHO05D007390 1.1e-158 563.5 325 85.2
Dinv30470 Davidia involucrata HOM05D002908 ORTHO05D007390 1.5e-157 559.7 324 84.0
FvH4_6g31910 Fragaria vesca HOM05D002908 ORTHO05D007390 2.6e-157 558.9 330 84.2
FAN14G2394 Fragaria x ananassa HOM05D002908 ORTHO05D007390 2.6e-157 558.9 330 84.2
Manes.04G131100 Manihot esculenta HOM05D002908 ORTHO05D007390 7.5e-157 557.4 323 84.5
RcHm_v2.0_Chr2g0139271 Rosa chinensis HOM05D002908 ORTHO05D007390 9.9e-157 557.0 330 84.2
FAN02G4032 Fragaria x ananassa HOM05D002908 ORTHO05D007390 1.7e-156 556.2 330 83.9
Atru.chr1.3416 Acer truncatum HOM05D002908 ORTHO05D007390 2.9e-156 555.4 324 85.2
MD17G1189500 Malus domestica HOM05D002908 ORTHO05D007390 2.4e-155 552.4 329 82.4
Potri.003G051500 Populus trichocarpa HOM05D002908 ORTHO05D007390 3.2e-155 552.0 325 83.7
FAN09G2740 Fragaria x ananassa HOM05D002908 ORTHO05D007390 4.1e-155 551.6 330 83.3
Ciclev10026026m.g Citrus clementina HOM05D002908 ORTHO05D007390 5.4e-155 551.2 323 84.5
Duzib235G0543 Durio zibethinus HOM05D002908 ORTHO05D007390 5.4e-155 551.2 325 83.7
GSVIVG01017049001 Vitis vinifera HOM05D002908 ORTHO05D007390 9.2e-155 550.4 318 84.9
Manes.11G036900 Manihot esculenta HOM05D002908 ORTHO05D007390 1.6e-154 549.7 323 82.4
TWI18G0563 Tripterygium wilfordii HOM05D002908 ORTHO05D007390 2.7e-154 548.9 325 83.4
ClCG07G013190 Citrullus lanatus HOM05D002908 ORTHO05D007390 1.3e-153 546.6 318 84.9
Sed0011260 Sechium edule HOM05D002908 ORTHO05D007390 1.3e-153 546.6 318 84.9
Sopen06g024840 Solanum pennellii HOM05D002908 ORTHO05D007390 1.7e-153 546.2 325 82.5
Solyc06g066570.4 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.0e-153 545.4 325 82.5
Nitab4.5_0009963g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 3.9e-153 545.0 325 81.2
Sc15g0002180 Simmondsia chinensis HOM05D002908 ORTHO05D007390 3.9e-153 545.0 326 81.0
CsaV3_3G023830 Cucumis sativus L. HOM05D002908 ORTHO05D007390 6.6e-153 544.3 318 84.6
Duzib192G0943 Durio zibethinus HOM05D002908 ORTHO05D007390 1.1e-152 543.5 325 82.8
MELO3C012977.2 Cucumis melo HOM05D002908 ORTHO05D007390 1.5e-152 543.1 318 84.6
Gorai.011G073300 Gossypium raimondii HOM05D002908 ORTHO05D007390 2.5e-152 542.3 323 82.7
CSS0023180 Camellia sinensis var. sinensis HOM05D002908 ORTHO05D007390 9.5e-152 540.4 321 82.9
PGSC0003DMG400016501 Solanum tuberosum HOM05D002908 ORTHO05D007390 9.5e-152 540.4 325 81.5
Actinidia32717 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.2e-151 540.0 324 82.1
AUR62011685 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.6e-151 539.7 325 81.2
CAN.G1152.12 Capsicum annuum HOM05D002908 ORTHO05D007390 2.1e-151 539.3 322 82.6
PGR102G0394 Punica granatum HOM05D002908 ORTHO05D007390 2.1e-151 539.3 324 82.7
Lj3g0013088 Lotus japonicus HOM05D002908 ORTHO05D007390 3.6e-151 538.5 293 91.8
Lsat_1_v5_gn_5_131021 Lactuca sativa HOM05D002908 ORTHO05D007390 4.7e-151 538.1 327 80.1
ECA234G0421 Erigeron canadensis HOM05D002908 ORTHO05D007390 1.1e-150 537.0 320 82.5
HanXRQChr04g0096211 Helianthus annuus HOM05D002908 ORTHO05D007390 3.1e-150 535.4 327 80.4
Peaxi162Scf00015g00145 Petunia axillaris HOM05D002908 ORTHO05D007390 4.0e-150 535.0 316 82.6
Eucgr.J02953 Eucalyptus grandis HOM05D002908 ORTHO05D007390 1.2e-149 533.5 318 81.8
Migut.D01011 Erythranthe guttata HOM05D002908 ORTHO05D007390 1.5e-149 533.1 320 83.4
Cc06_g20260 Coffea canephora HOM05D002908 ORTHO05D007390 2.0e-149 532.7 328 79.3
MSTRG.4742 Avicennia marina HOM05D002908 ORTHO05D007390 4.4e-149 531.6 324 80.9
TAR624G0208 Trochodendron aralioides HOM05D002908 ORTHO05D007390 4.4e-149 531.6 326 80.7
Oeu000462.1 Olea europaea HOM05D002908 ORTHO05D007390 5.8e-149 531.2 324 81.8
Potri.001G186000 Populus trichocarpa HOM05D002908 ORTHO05D007390 5.8e-149 531.2 321 82.6
HanXRQChr12g0360831 Helianthus annuus HOM05D002908 ORTHO05D007390 7.6e-149 530.8 326 79.8
vmacro18877 Vaccinium macrocarpon HOM05D002908 ORTHO05D007390 3.8e-148 528.5 323 80.2
SGA_v2.0_scaffold68G22970 Striga asiatica HOM05D002908 ORTHO05D007390 1.1e-147 526.9 324 80.2
EL10Ac9g22051 Beta vulgaris HOM05D002908 ORTHO05D007390 1.4e-147 526.6 325 78.2
Nn2g11662 Nelumbo nucifera HOM05D002908 ORTHO05D007390 1.9e-147 526.2 327 79.8
Nitab4.5_0000351g0020 Nicotiana tabacum HOM05D002908 ORTHO05D007390 3.2e-147 525.4 325 78.8
Sabra03G0027500 Salix brachista HOM05D002908 ORTHO05D007390 5.4e-147 524.6 352 75.3
THA.LOC104813553 Tarenaya hassleriana HOM05D002908 ORTHO05D007390 1.6e-146 523.1 327 78.3
SGA_v2.0_scaffold4G02012 Striga asiatica HOM05D002908 ORTHO05D007390 2.7e-146 522.3 324 79.6
MBI04_g14938_MAGBIO Magnolia biondii HOM05D002908 ORTHO05D007390 3.5e-146 521.9 332 78.3
Aqoxy7G01537 Aquilegia oxysepala HOM05D002908 ORTHO05D007390 3.9e-145 518.5 327 77.4
Sp5g35950 Schrenkiella parvula HOM05D002908 ORTHO05D007390 3.9e-145 518.5 323 78.9
CARHR074760 Cardamine hirsuta HOM05D002908 ORTHO05D007390 5.1e-145 518.1 326 77.9
Actinidia21691 Actinidia chinensis HOM05D002908 ORTHO05D007390 1.1e-144 516.9 307 83.7
PSO566G0119 Papaver somniferum HOM05D002908 ORTHO05D007390 7.3e-144 514.2 333 77.2
AL2G41740 Arabidopsis lyrata HOM05D002908 ORTHO05D007390 1.6e-143 513.1 323 78.9
PSO782G2745 Papaver somniferum HOM05D002908 ORTHO05D007390 1.6e-143 513.1 333 76.9
AT1G79810 Arabidopsis thaliana HOM05D002908 ORTHO05D007390 4.7e-143 511.5 325 78.2
Thhalv10018845m.g Eutrema salsugineum HOM05D002908 ORTHO05D007390 6.2e-143 511.1 323 78.0
Carub.0002s2769 Capsella rubella HOM05D002908 ORTHO05D007390 8.1e-143 510.8 326 77.9
Haze_16343 Corylus avellana HOM05D002908 ORTHO05D007390 8.1e-143 510.8 291 87.6
HPP92_002914 Vanilla planifolia HOM05D002908 ORTHO05D007390 2.4e-142 509.2 327 77.1
A07p26340 Brassica napus HOM05D002908 ORTHO05D007390 6.9e-142 507.7 324 77.5
BraA07t30278Z Brassica rapa HOM05D002908 ORTHO05D007390 6.9e-142 507.7 324 77.5
Hund00658 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.5e-141 506.5 325 75.4
BolC6t38042H Brassica oleracea HOM05D002908 ORTHO05D007390 3.4e-141 505.4 324 77.2
TAR636G3411 Trochodendron aralioides HOM05D002908 ORTHO05D007390 7.6e-141 504.2 325 77.2
C06p28730 Brassica napus HOM05D002908 ORTHO05D007390 3.8e-140 501.9 321 77.6
CDE05G0315 Ceratophyllum demersum HOM05D002908 ORTHO05D007390 3.8e-140 501.9 326 74.5
AUR62016511 Chenopodium quinoa HOM05D002908 ORTHO05D007390 1.1e-139 500.4 295 83.1
unitig_736.g22790 Utricularia gibba HOM05D002908 ORTHO05D007390 7.3e-136 487.6 326 73.3
Lj5C318G10 Lonicera japonica HOM05D002908 ORTHO05D007390 3.6e-135 485.3 291 82.1
Aa31LG4G20 Aethionema arabicum HOM05D002908 ORTHO05D007390 3.1e-134 482.3 353 68.3
Rhsim08G0224800 Rhododendron simsii HOM05D002908 ORTHO05D007390 5.3e-134 481.5 328 75.6
Hund06642 Selenicereus undatus HOM05D002908 ORTHO05D007390 1.5e-133 479.9 292 81.5
Os05g0275700 Oryza sativa ssp. japonica HOM05D002908 ORTHO05D007390 2.0e-133 479.6 324 73.8
ATR0315G165 Amborella trichopoda HOM05D002908 ORTHO05D007390 7.6e-133 477.6 323 73.4
Prupe.3G064400 Prunus persica HOM05D002908 ORTHO05D007390 6.4e-132 474.6 262 87.0
Gohir.D06G197300 Gossypium hirsutum HOM05D002908 ORTHO05D007390 5.4e-131 471.5 258 87.2
Gohir.A06G188700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 3.5e-130 468.8 254 88.2
Sabra01G0154100 Salix brachista HOM05D002908 ORTHO05D007390 1.5e-128 463.4 320 75.0
Zm00001eb031430 Zea mays HOM05D002908 ORTHO05D007390 7.4e-128 461.1 289 77.9
CiPaw.02G148100 Carya illinoinensis HOM05D002908 ORTHO05D007390 6.9e-126 454.5 257 84.8
SalBow7G1474 Salvia bowleyana HOM05D002908 ORTHO05D007390 8.4e-124 447.6 344 68.0
DCAR_026336 Daucus carota HOM05D002908 ORTHO05D007390 2.7e-122 442.6 329 70.5
Lsat_1_v5_gn_1_35361 Lactuca sativa HOM05D002908 ORTHO05D007390 1.2e-117 427.2 274 79.2
Gohir.D10G068700 Gossypium hirsutum HOM05D002908 ORTHO05D007390 2.9e-116 422.5 256 81.2
CiPaw.01G234600 Carya illinoinensis HOM05D002908 ORTHO05D007390 4.8e-111 405.2 225 87.1
Dinv38008 Davidia involucrata HOM05D002908 ORTHO05D007390 4.5e-109 398.7 230 85.2
Pp3c3_18540 Physcomitrium patens HOM05D002908 ORTHO05D007390 3.4e-101 372.5 327 58.1
Mapoly0052s0120 Marchantia polymorpha HOM05D002908 ORTHO05D007390 3.8e-100 369.0 326 58.6
SMO146G0339 Selaginella moellendorffii HOM05D002908 ORTHO05D007390 3.8e-100 369.0 328 57.0
Lalb_Chr25g0280041 Lupinus albus HOM05D002908 ORTHO05D007390 1.1e-88 330.9 281 66.2
Cpa.g.sc109.47 Carica papaya HOM05D002908 ORTHO05D007390 4.2e-83 312.4 207 76.8
CBR_g960 Chara braunii HOM05D002908 ORTHO05D007390 8.8e-81 304.7 299 53.8
SEGI_14821 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 2.0e-77 293.5 205 67.3
Gohir.A10G083732 Gossypium hirsutum HOM05D002908 ORTHO05D007390 9.4e-75 284.6 175 80.6
Psat4g199400 Pisum sativum HOM05D002908 ORTHO05D007390 2.0e-72 276.9 150 90.0
AagrBONN_evm.TU.Sc2ySwM_228.2361 Anthoceros agrestis HOM05D002908 ORTHO05D007390 7.0e-62 241.9 206 60.2
Sed0019299 Sechium edule HOM05D002908 ORTHO05D007390 1.7e-60 237.3 213 61.5
MCO16G131 Micromonas commoda HOM05D002908 ORTHO05D007390 5.0e-52 209.1 318 38.4
Lsat_1_v5_gn_1_85060 Lactuca sativa HOM05D002908 ORTHO05D007390 3.6e-50 203.0 177 61.0
PGSC0003DMG400002631 Solanum tuberosum HOM05D002908 ORTHO05D007390 2.6e-48 196.8 316 43.0
Solyc03g120520.2 Solanum lycopersicum HOM05D002908 ORTHO05D007390 3.7e-47 193.0 238 46.2
Cre17.g698800 Chlamydomonas reinhardtii HOM05D002908 ORTHO05D007390 3.9e-44 183.0 409 34.0
CAN.G438.36 Capsicum annuum HOM05D002908 ORTHO05D007390 3.1e-41 173.3 114 75.4
Lj5C56G8 Lonicera japonica HOM05D002908 ORTHO05D007390 1.1e-38 164.9 227 49.8
PRCOL_00006980 Prasinoderma coloniale HOM05D000198 ORTHO05D003232 6.0e-37 159.1 322 36.6
SEGI_00949 Sequoiadendron giganteum HOM05D002908 ORTHO05D007390 3.8e-31 139.8 109 65.1
Medtr7g090350 Medicago truncatula HOM05D002908 ORTHO05D007390 2.1e-26 124.0 259 37.1
Rhsim02G0192800 Rhododendron simsii HOM05D002908 ORTHO05D004240 1.3e-18 98.2 57 86.0
Sopen00g008760 Solanum pennellii HOM05D002908 ORTHO05D007390 5.3e-17 92.8 98 52.0
Rhsim03G0241200 Rhododendron simsii HOM05D002908 ORTHO05D050692 5.8e-16 89.4 45 91.1
Lsat_1_v5_gn_3_20480 Lactuca sativa HOM05D001398 ORTHO05D011740 2.1e-13 80.9 78 56.4
Rhsim12G0105800 Rhododendron simsii HOM05D002908 ORTHO05D340239 3.9e-12 76.6 55 69.1
Solyc12g027700.1 Solanum lycopersicum HOM05D002908 ORTHO05D050692 1.2e-08 65.1 30 90.0
Nn3g18125 Nelumbo nucifera HOM05D002908 ORTHO05D007390 3.2e-06 57.0 47 66.0


User provided reference genes

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