Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G320100 Glycine max HOM05D004098 ORTHO05D005215 0.0e+00 1263.4 737 100.0
Glyma.04G116700 Glycine max HOM05D004098 ORTHO05D005215 0.0e+00 1215.3 739 96.6
VMungo1080G0600 Vigna mungo HOM05D004098 ORTHO05D005215 0.0e+00 1155.6 736 92.0
Phvul.005G006500 Phaseolus vulgaris HOM05D004098 ORTHO05D005215 0.0e+00 1153.7 737 92.0
Lj3g0001916 Lotus japonicus HOM05D004098 ORTHO05D005215 7.4e-306 1053.5 745 85.1
Lalb_Chr15g0079811 Lupinus albus HOM05D004098 ORTHO05D005215 2.7e-295 1018.5 753 82.2
arahy.Tifrunner.gnm1.ann1.FI1VU9 Arachis hypogaea HOM05D004098 ORTHO05D005215 1.5e-290 1002.7 753 83.0
Lalb_Chr18g0048751 Lupinus albus HOM05D004098 ORTHO05D005215 9.8e-290 1000.0 753 81.5
arahy.Tifrunner.gnm1.ann1.36GALV Arachis hypogaea HOM05D004098 ORTHO05D005215 4.8e-289 997.7 775 80.8
Medtr3g009230 Medicago truncatula HOM05D004098 ORTHO05D005215 5.9e-287 990.7 747 82.7
Psat5g230760 Pisum sativum HOM05D004098 ORTHO05D005215 7.7e-287 990.3 747 81.8
Ca_14121_v3 Cicer arietinum L. HOM05D004098 ORTHO05D005215 4.1e-280 968.0 747 81.4
TPR.G16705 Trifolium pratense HOM05D004098 ORTHO05D005215 1.5e-274 949.5 632 79.3
Cfa016972 Carpinus fangiana HOM05D004098 ORTHO05D005215 1.5e-258 896.3 749 75.2
Potri.011G170000 Populus trichocarpa HOM05D004098 ORTHO05D005215 5.4e-256 887.9 748 74.5
Manes.01G008000 Manihot esculenta HOM05D004098 ORTHO05D005215 1.2e-255 886.7 749 74.0
TWI14G0432 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-255 886.7 746 75.9
TWI39G0299 Tripterygium wilfordii HOM05D004098 ORTHO05D005215 1.2e-255 886.7 746 75.9
CiPaw.11G211200 Carya illinoinensis HOM05D004098 ORTHO05D005215 2.1e-255 885.9 755 75.1
Prupe.6G036900 Prunus persica HOM05D004098 ORTHO05D005215 3.0e-254 882.1 758 73.1
Ciclev10007566m.g Citrus clementina HOM05D004098 ORTHO05D005215 2.5e-253 879.0 746 74.3
COL.COLO4_07798 Corchorus olitorius HOM05D004098 ORTHO05D005215 2.1e-252 875.9 735 74.6
MD11G1047800 Malus domestica HOM05D004098 ORTHO05D005215 3.2e-248 862.1 750 72.5
TAR626G1397 Trochodendron aralioides HOM05D004098 ORTHO05D005215 5.4e-248 861.3 760 72.6
Dinv42526 Davidia involucrata HOM05D004098 ORTHO05D005215 1.0e-246 857.1 639 68.9
Rhsim04G0006500 Rhododendron simsii HOM05D004098 ORTHO05D005215 1.3e-246 856.7 793 58.1
PGR083G2418 Punica granatum HOM05D004098 ORTHO05D005215 5.1e-246 854.7 743 72.4
Dinv19633 Davidia involucrata HOM05D004098 ORTHO05D005215 9.6e-245 850.5 753 72.8
QL08p000136 Quercus lobata HOM05D004098 ORTHO05D005215 9.6e-245 850.5 757 72.9
Potri.001G473100 Populus trichocarpa HOM05D004098 ORTHO05D005215 8.1e-244 847.4 748 73.4
FAN16G0876 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.2e-242 843.6 758 71.4
Manes.05G203450 Manihot esculenta HOM05D004098 ORTHO05D005215 1.2e-242 843.6 749 72.4
MD03G1045600 Malus domestica HOM05D004098 ORTHO05D005215 1.5e-242 843.2 749 71.4
FAN21G3119 Fragaria x ananassa HOM05D004098 ORTHO05D005215 5.8e-242 841.3 758 71.4
FvH4_3g41350 Fragaria vesca HOM05D004098 ORTHO05D005215 7.6e-242 840.9 750 72.0
GSVIVG01014864001 Vitis vinifera HOM05D004098 ORTHO05D005215 9.9e-242 840.5 746 72.8
Gohir.A04G000400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.2e-241 839.3 744 72.6
FAN11G1160 Fragaria x ananassa HOM05D004098 ORTHO05D005215 4.9e-241 838.2 750 71.9
Gohir.D05G388750 Gossypium hirsutum HOM05D004098 ORTHO05D005215 6.4e-241 837.8 744 72.4
Actinidia37106 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.4e-240 836.6 756 70.8
Atru.chr2.3913 Acer truncatum HOM05D004098 ORTHO05D005215 2.4e-240 835.9 634 69.9
Gohir.D05G388800 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.2e-240 835.1 745 72.3
RcHm_v2.0_Chr5g0074241 Rosa chinensis HOM05D004098 ORTHO05D005215 4.2e-240 835.1 757 71.6
Gorai.009G455400 Gossypium raimondii HOM05D004098 ORTHO05D005215 5.4e-240 834.7 745 72.3
Cc05_g15840 Coffea canephora HOM05D004098 ORTHO05D005215 7.1e-240 834.3 745 73.0
Eucgr.F01979 Eucalyptus grandis HOM05D004098 ORTHO05D005215 1.2e-239 833.6 742 71.8
Oeu052018.2 Olea europaea HOM05D004098 ORTHO05D005215 2.7e-239 832.4 771 69.4
Thecc.07G000300 Theobroma cacao HOM05D004098 ORTHO05D005215 3.5e-239 832.0 740 71.9
Duzib268G0918 Durio zibethinus HOM05D004098 ORTHO05D005215 2.3e-238 829.3 742 70.8
CANSAT11G1316 Cannabis sativa HOM05D004098 ORTHO05D005215 1.1e-237 827.0 757 70.7
FAN25G0546 Fragaria x ananassa HOM05D004098 ORTHO05D005215 1.9e-237 826.2 775 70.1
Peaxi162Scf00018g00064 Petunia axillaris HOM05D004098 ORTHO05D005215 9.6e-237 823.9 783 67.7
THA.LOC104813473 Tarenaya hassleriana HOM05D004098 ORTHO05D005215 3.6e-236 822.0 738 70.3
Sabra11G0137000 Salix brachista HOM05D004098 ORTHO05D005215 3.1e-235 818.9 827 66.7
Aqoxy4G02276 Aquilegia oxysepala HOM05D004098 ORTHO05D005215 3.4e-234 815.5 765 70.1
Sc03g0011840 Simmondsia chinensis HOM05D004098 ORTHO05D005215 2.9e-233 812.4 758 69.4
SalBow8G2465 Salvia bowleyana HOM05D004098 ORTHO05D005215 2.4e-232 809.3 764 69.1
Hma1.2p1_0321F.1_g124430 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 3.2e-232 808.9 744 70.6
DCAR_016814 Daucus carota HOM05D004098 ORTHO05D005215 4.6e-231 805.1 774 67.4
Lj8C185G3 Lonicera japonica HOM05D004098 ORTHO05D005215 1.1e-229 800.4 842 63.1
Nn2g14376 Nelumbo nucifera HOM05D004098 ORTHO05D005215 1.5e-229 800.0 758 69.4
MELO3C014028.2 Cucumis melo HOM05D004098 ORTHO05D005215 1.3e-228 797.0 753 69.6
CsaV3_3G003580 Cucumis sativus L. HOM05D004098 ORTHO05D005215 3.7e-228 795.4 753 69.5
PSO675G3414 Papaver somniferum HOM05D004098 ORTHO05D005215 8.1e-228 794.3 767 67.9
Nitab4.5_0000611g0190 Nicotiana tabacum HOM05D004098 ORTHO05D005215 4.0e-227 792.0 788 56.6
Migut.M01572 Erythranthe guttata HOM05D004098 ORTHO05D005215 1.7e-225 786.6 742 69.1
PSO541G4185 Papaver somniferum HOM05D004098 ORTHO05D005215 2.2e-225 786.2 767 67.5
BolC3t14019H Brassica oleracea HOM05D004098 ORTHO05D005215 4.2e-224 781.9 768 65.6
MSTRG.16125 Avicennia marina HOM05D004098 ORTHO05D005215 9.3e-224 780.8 754 68.0
PGSC0003DMG400011237 Solanum tuberosum HOM05D004098 ORTHO05D005215 2.1e-223 779.6 748 68.3
Solyc10g005650.3 Solanum lycopersicum HOM05D004098 ORTHO05D005215 3.9e-222 775.4 748 67.9
AL8G31920 Arabidopsis lyrata HOM05D004098 ORTHO05D005215 6.7e-222 774.6 740 67.2
BraA03t10663Z Brassica rapa HOM05D004098 ORTHO05D005215 6.7e-222 774.6 768 58.7
Sopen10g001620 Solanum pennellii HOM05D004098 ORTHO05D005215 1.5e-221 773.5 748 67.9
C03p15880 Brassica napus HOM05D004098 ORTHO05D005215 9.6e-221 770.8 742 67.3
HanXRQChr05g0160701 Helianthus annuus HOM05D004098 ORTHO05D005215 1.6e-220 770.0 744 69.1
AT5G56290 Arabidopsis thaliana HOM05D004098 ORTHO05D005215 2.1e-220 769.6 740 67.3
CARHR269690 Cardamine hirsuta HOM05D004098 ORTHO05D005215 4.8e-220 768.5 741 66.8
Lsat_1_v5_gn_5_241 Lactuca sativa HOM05D004098 ORTHO05D005215 8.2e-220 767.7 753 68.9
ECA246G1615 Erigeron canadensis HOM05D004098 ORTHO05D005215 3.1e-219 765.8 739 69.0
DCAR_019936 Daucus carota HOM05D004098 ORTHO05D005215 4.0e-219 765.4 797 56.8
BcaB01g04390 Brassica carinata HOM05D004098 ORTHO05D005215 9.0e-219 764.2 742 66.8
CSS0008075 Camellia sinensis var. sinensis HOM05D004098 ORTHO05D005215 3.4e-218 762.3 680 70.6
Nitab4.5_0004488g0010 Nicotiana tabacum HOM05D004098 ORTHO05D005215 1.7e-217 760.0 788 64.2
ClCG10G003580 Citrullus lanatus HOM05D004098 ORTHO05D005215 2.9e-217 759.2 839 63.2
BcaC01g06414 Brassica carinata HOM05D004098 ORTHO05D005215 1.9e-216 756.5 743 66.8
Thhalv10012791m.g Eutrema salsugineum HOM05D004098 ORTHO05D005215 5.5e-216 755.0 740 66.2
A03p13590 Brassica napus HOM05D004098 ORTHO05D005215 4.6e-215 751.9 742 66.7
AUR62043123 Chenopodium quinoa HOM05D004098 ORTHO05D005215 7.9e-215 751.1 748 66.8
BraA10t43460Z Brassica rapa HOM05D004098 ORTHO05D005215 3.9e-214 748.8 778 63.8
Carub.0008s1661 Capsella rubella HOM05D004098 ORTHO05D005215 1.9e-213 746.5 740 66.6
BolC9t57610H Brassica oleracea HOM05D004098 ORTHO05D005215 2.4e-211 739.6 745 65.0
Aa31LG3G12200 Aethionema arabicum HOM05D004098 ORTHO05D005215 1.2e-210 737.3 741 65.9
Sp6g18140 Schrenkiella parvula HOM05D004098 ORTHO05D005215 2.6e-210 736.1 742 65.1
unitig_749.g13703 Utricularia gibba HOM05D004098 ORTHO05D005215 7.7e-210 734.6 762 63.6
A10p13580 Brassica napus HOM05D004098 ORTHO05D005215 1.2e-207 727.2 741 65.0
CAN.G492.64 Capsicum annuum HOM05D004098 ORTHO05D005215 4.3e-205 718.8 748 64.7
C09p47570 Brassica napus HOM05D004098 ORTHO05D005215 1.8e-203 713.4 741 64.2
EL10Ac4g07494 Beta vulgaris HOM05D004098 ORTHO05D005215 7.2e-200 701.4 749 64.6
Haze_09929 Corylus avellana HOM05D004098 ORTHO05D005215 7.7e-194 681.4 791 61.4
SGA_v2.0_scaffold7G03562 Striga asiatica HOM05D004098 ORTHO05D005215 1.0e-193 681.0 795 61.5
BcaB05g22257 Brassica carinata HOM05D004098 ORTHO05D005215 3.8e-193 679.1 775 60.3
MSTRG.7048 Avicennia marina HOM05D004098 ORTHO05D005215 1.4e-190 670.6 749 62.2
Actinidia35440 Actinidia chinensis HOM05D004098 ORTHO05D005215 1.1e-189 667.5 770 50.5
BcaC04g20111 Brassica carinata HOM05D004098 ORTHO05D005215 1.8e-179 633.6 746 56.4
Sed0000599 Sechium edule HOM05D004098 ORTHO05D005215 1.8e-179 633.6 564 63.3
Hma1.2p1_0321F.1_g124440 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 4.5e-178 629.0 551 74.2
ClCG00G000320 Citrullus lanatus HOM05D004098 ORTHO05D005215 3.8e-177 625.9 1242 43.6
ATR0751G081 Amborella trichopoda HOM05D004098 ORTHO05D005215 2.6e-173 613.2 724 60.1
Mapoly0064s0022 Marchantia polymorpha HOM05D004098 ORTHO05D005215 1.0e-158 564.7 763 54.3
Os08g0500100 Oryza sativa ssp. japonica HOM05D004098 ORTHO05D005215 5.8e-157 558.9 753 57.5
Pp3c14_5170 Physcomitrium patens HOM05D004098 ORTHO05D005215 2.0e-154 550.4 769 54.4
HPP92_017855 Vanilla planifolia HOM05D004098 ORTHO05D005215 2.8e-151 540.0 452 62.4
Zm00001eb199560 Zea mays HOM05D004098 ORTHO05D005215 2.8e-151 540.0 760 55.7
SMO361G0081 Selaginella moellendorffii HOM05D004098 ORTHO05D005215 6.8e-150 535.4 647 50.7
Zm00001eb034080 Zea mays HOM05D004098 ORTHO05D005215 6.8e-150 535.4 758 56.1
SEGI_20896 Sequoiadendron giganteum HOM05D004098 ORTHO05D005215 3.6e-127 459.9 440 56.1
vmacro09792 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 3.6e-127 459.9 535 50.3
CBR_g45681 Chara braunii HOM05D004098 ORTHO05D005215 2.4e-115 420.6 647 42.5
Ah.04g164860 Amaranthus hybridus HOM05D004098 ORTHO05D005215 7.6e-109 399.1 360 81.7
AUR62017764 Chenopodium quinoa HOM05D004098 ORTHO05D005215 6.7e-105 386.0 384 77.9
CDE05G2641 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 1.3e-103 381.7 361 79.2
AUR62017765 Chenopodium quinoa HOM05D004098 ORTHO05D005215 3.4e-101 373.6 378 55.6
vmacro09791 Vaccinium macrocarpon HOM05D004098 ORTHO05D005215 1.4e-99 368.2 303 90.8
Ah.04g164850 Amaranthus hybridus HOM05D000499 ORTHO05D002036 4.5e-85 320.1 377 51.5
CDE05G2368 Ceratophyllum demersum HOM05D004098 ORTHO05D005215 2.2e-76 291.2 335 51.6
Cre14.g616750 Chlamydomonas reinhardtii HOM05D004098 ORTHO05D005215 6.5e-76 289.7 740 32.8
BolC2t07653H Brassica oleracea HOM05D004098 ORTHO05D005215 6.1e-74 283.1 490 38.6
Gohir.A13G000950 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.7e-71 275.0 314 51.3
Gohir.A04G000600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-67 261.5 168 75.0
Cpa.g.sc12.52 Carica papaya HOM05D004098 ORTHO05D005215 5.7e-64 250.0 202 63.9
MCO05G026 Micromonas commoda HOM05D004098 ORTHO05D005215 9.1e-62 242.7 846 38.3
C02p15370 Brassica napus HOM05D004098 ORTHO05D005215 7.2e-59 233.0 484 34.7
Cpa.g.sc12.51 Carica papaya HOM05D004098 ORTHO05D005215 1.3e-55 222.2 148 75.0
PRCOL_00000784 Prasinoderma coloniale HOM05D004098 ORTHO05D005215 2.8e-55 221.1 692 30.6
Gohir.A03G000002 Gossypium hirsutum HOM05D004098 ORTHO05D005215 4.3e-43 180.6 236 45.3
Gohir.A06G201500 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.2e-40 172.6 98 86.7
Gohir.1Z049490 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.8e-40 169.5 92 89.1
Gorai.009G455200 Gossypium raimondii HOM05D004098 ORTHO05D005215 2.9e-39 167.9 236 43.6
Gohir.A12G000850 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.0e-36 157.1 236 41.9
Haze_09931 Corylus avellana HOM05D000997 ORTHO05D000828 1.5e-32 145.6 109 67.0
Gohir.A08G253600 Gossypium hirsutum HOM05D004098 ORTHO05D005215 3.4e-32 144.4 80 87.5
Gohir.A11G000300 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.9e-31 141.4 84 83.3
Lsat_1_v5_gn_6_79681 Lactuca sativa HOM05D004098 ORTHO05D005215 1.4e-30 139.0 152 50.0
Gohir.A01G000401 Gossypium hirsutum HOM05D004098 ORTHO05D005215 1.9e-30 138.7 82 79.3
Lsat_1_v5_gn_8_35540 Lactuca sativa HOM05D004098 ORTHO05D005215 1.1e-27 129.4 167 50.3
A02p09220 Brassica napus HOM05D004098 ORTHO05D005215 1.9e-27 128.6 93 71.0
Gohir.1Z049406 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.6e-27 127.1 101 66.3
Lsat_1_v5_gn_8_153381 Lactuca sativa HOM05D004098 ORTHO05D005215 9.5e-27 126.3 143 51.7
Gohir.A03G000007 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.1e-26 125.2 67 83.6
Gohir.A07G135000 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.6e-24 116.7 87 69.0
Gohir.A05G415701 Gossypium hirsutum HOM05D002376 ORTHO05D004654 2.2e-23 115.2 70 78.6
Gohir.A12G000500 Gossypium hirsutum HOM05D004741 ORTHO05D005454 2.4e-22 111.7 61 85.2
Gohir.D03G178425 Gossypium hirsutum HOM05D004098 ORTHO05D005215 5.4e-22 110.5 61 83.6
Lsat_1_v5_gn_2_71300 Lactuca sativa HOM05D004098 ORTHO05D005215 2.1e-21 108.6 82 69.5
TPR.G8441 Trifolium pratense HOM05D004098 ORTHO05D021823 5.1e-20 104.0 156 92.9
Cpa.g.sc12.49 Carica papaya HOM05D004098 ORTHO05D021823 4.3e-19 100.9 154 91.6
MBI15_g32219_MAGBIO Magnolia biondii HOM05D004098 ORTHO05D005215 5.2e-17 94.0 107 56.1
Gohir.A05G415601 Gossypium hirsutum HOM05D004098 ORTHO05D005215 9.3e-14 83.2 91 49.5
Lsat_1_v5_gn_3_67900 Lactuca sativa HOM05D004098 ORTHO05D005215 2.1e-13 82.0 207 32.9
Gohir.A03G081400 Gossypium hirsutum HOM05D004098 ORTHO05D005215 7.8e-13 80.1 60 70.0
HPP92_017856 Vanilla planifolia HOM05D004098 ORTHO05D005215 8.7e-12 76.6 110 48.2
C02p15380 Brassica napus HOM05D004098 ORTHO05D005215 3.3e-11 74.7 136 41.2
Hma1.2p1_0321F.1_g124420 Hydrangea macrophylla HOM05D004098 ORTHO05D005215 9.6e-11 73.2 119 46.2
Cfa024256 Carpinus fangiana HOM05D032100 ORTHO05D126575 1.3e-10 72.8 190 31.1
Gohir.1Z049608 Gossypium hirsutum HOM05D004098 ORTHO05D005215 2.0e-08 65.5 50 58.0
Hund01805 Selenicereus undatus HOM05D004098 ORTHO05D005215 2.0e-08 65.5 43 74.4
Gohir.A06G201400 Gossypium hirsutum HOM05D002376 ORTHO05D004654 1.9e-06 58.9 30 86.7
Lsat_1_v5_gn_3_135720 Lactuca sativa HOM05D004098 ORTHO05D005215 2.4e-06 58.5 50 66.0
Gohir.A08G000028 Gossypium hirsutum HOM05D002376 ORTHO05D004654 3.2e-06 58.2 29 89.7
Hma1.2p1_1190F.1_g265410 Hydrangea macrophylla HOM05D001237 ORTHO05D001827 3.2e-06 58.2 57 50.9
Gohir.A09G249700 Gossypium hirsutum HOM05D004098 ORTHO05D021823 7.1e-06 57.0 30 83.3


User provided reference genes

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