Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G297000 Glycine max HOM05D004586 ORTHO05D005266 4.5e-234 814.7 574 100.0
Glyma.12G108100 Glycine max HOM05D004586 ORTHO05D005266 2.5e-192 676.0 577 85.8
Phvul.011G112400 Phaseolus vulgaris HOM05D004586 ORTHO05D005266 3.1e-150 536.2 581 68.2
VMungo1127G2109 Vigna mungo HOM05D004586 ORTHO05D005266 6.9e-150 535.0 588 66.3
Lj3g0023901 Lotus japonicus HOM05D004586 ORTHO05D005266 1.2e-133 481.1 446 59.0
Lalb_Chr01g0005391 Lupinus albus HOM05D004586 ORTHO05D005266 1.0e-132 478.0 424 59.0
Ca_20687_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 2.8e-119 433.3 435 59.5
Medtr0072s0050 Medicago truncatula HOM05D004586 ORTHO05D005266 4.7e-114 416.0 424 54.7
arahy.Tifrunner.gnm1.ann1.FC6AAX Arachis hypogaea HOM05D004586 ORTHO05D005266 1.1e-110 404.8 427 55.7
TPR.G21660 Trifolium pratense HOM05D004586 ORTHO05D005266 1.2e-109 401.4 484 53.7
arahy.Tifrunner.gnm1.ann1.SANC69 Arachis hypogaea HOM05D004586 ORTHO05D005266 2.1e-106 390.6 444 53.8
Psat0s4261g0040 Pisum sativum HOM05D004586 ORTHO05D005266 2.0e-101 374.0 627 49.3
Haze_13103 Corylus avellana HOM05D004586 ORTHO05D005266 1.6e-90 337.8 445 46.1
CANSAT64G2104 Cannabis sativa HOM05D004586 ORTHO05D005266 8.1e-90 335.5 433 46.0
CiPaw.03G171000 Carya illinoinensis HOM05D004586 ORTHO05D005266 2.0e-88 330.9 408 48.3
MD09G1092000 Malus domestica HOM05D004586 ORTHO05D005266 1.9e-86 324.3 477 43.2
Cfa014556 Carpinus fangiana HOM05D004586 ORTHO05D005266 1.0e-84 318.5 439 46.0
Hma1.2p1_0875F.1_g231553 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.1e-83 315.1 437 45.8
Hma1.2p1_0875F.1_g231580 Hydrangea macrophylla HOM05D004586 ORTHO05D005266 1.1e-83 315.1 437 45.8
MD17G1081900 Malus domestica HOM05D004586 ORTHO05D005266 4.3e-83 313.2 457 44.2
QL10p048480 Quercus lobata HOM05D004586 ORTHO05D005266 7.3e-83 312.4 410 47.3
Prupe.3G233000 Prunus persica HOM05D004586 ORTHO05D005266 4.7e-82 309.7 367 49.9
Actinidia09891 Actinidia chinensis HOM05D004586 ORTHO05D005266 3.1e-81 307.0 432 44.2
Atru.chr6.3049 Acer truncatum HOM05D004586 ORTHO05D005266 1.2e-80 305.1 436 45.0
Potri.013G145300 Populus trichocarpa HOM05D004586 ORTHO05D005266 2.6e-80 303.9 427 45.2
Sabra13G0117000 Salix brachista HOM05D004586 ORTHO05D005266 2.6e-80 303.9 416 45.4
FAN02G1766 Fragaria x ananassa HOM05D004586 ORTHO05D005266 9.9e-80 302.0 377 49.3
RcHm_v2.0_Chr2g0162091 Rosa chinensis HOM05D004586 ORTHO05D005266 9.9e-80 302.0 375 48.0
GSVIVG01030569001 Vitis vinifera HOM05D004586 ORTHO05D005266 1.3e-79 301.6 426 43.2
FAN09G2343 Fragaria x ananassa HOM05D004586 ORTHO05D005266 1.7e-79 301.2 377 48.3
FvH4_6g44910 Fragaria vesca HOM05D004586 ORTHO05D005266 6.4e-79 299.3 357 49.3
Ca_27565_v3 Cicer arietinum L. HOM05D004586 ORTHO05D005266 1.4e-78 298.1 452 43.4
Ciclev10014470m.g Citrus clementina HOM05D004586 ORTHO05D005266 1.4e-78 298.1 435 45.5
FAN14G4866 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.1e-77 294.3 355 48.5
Thecc.02G173500 Theobroma cacao HOM05D004586 ORTHO05D005266 3.5e-77 293.5 423 46.3
Potri.019G104400 Populus trichocarpa HOM05D004586 ORTHO05D005266 6.0e-77 292.7 394 45.9
Eucgr.B03848 Eucalyptus grandis HOM05D004586 ORTHO05D005266 1.0e-76 292.0 438 43.2
Manes.12G079600 Manihot esculenta HOM05D004586 ORTHO05D005266 2.3e-76 290.8 431 43.9
Duzib052G0504 Durio zibethinus HOM05D004586 ORTHO05D005266 3.9e-76 290.0 410 43.9
Duzib106G1111 Durio zibethinus HOM05D004586 ORTHO05D005266 6.6e-76 289.3 417 43.2
Gorai.013G166800 Gossypium raimondii HOM05D004586 ORTHO05D005266 8.7e-76 288.9 417 45.6
Actinidia12449 Actinidia chinensis HOM05D004586 ORTHO05D005266 1.1e-75 288.5 439 45.6
COL.COLO4_13701 Corchorus olitorius HOM05D004586 ORTHO05D005266 1.1e-75 288.5 410 44.1
Cpa.g.sc34.112 Carica papaya HOM05D004586 ORTHO05D005266 3.3e-75 287.0 440 44.8
TWI36G0730 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 4.3e-75 286.6 442 43.0
Gohir.D13G149100 Gossypium hirsutum HOM05D004586 ORTHO05D005266 7.3e-75 285.8 417 45.1
Gohir.A13G144300 Gossypium hirsutum HOM05D004586 ORTHO05D005266 1.8e-73 281.2 412 44.9
Oeu025511.1 Olea europaea HOM05D004586 ORTHO05D005266 3.1e-73 280.4 430 42.8
TAR627G0949 Trochodendron aralioides HOM05D004586 ORTHO05D005266 4.0e-73 280.0 420 43.8
CSS0039758 Camellia sinensis var. sinensis HOM05D004586 ORTHO05D005266 5.2e-73 279.6 311 50.5
FAN05G3704 Fragaria x ananassa HOM05D004586 ORTHO05D005266 2.0e-72 277.7 376 45.7
Nitab4.5_0009520g0030 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.4e-72 276.9 436 42.9
arahy.Tifrunner.gnm1.ann1.IS01QF Arachis hypogaea HOM05D004586 ORTHO05D005266 4.4e-72 276.6 462 42.2
Nitab4.5_0003018g0070 Nicotiana tabacum HOM05D004586 ORTHO05D005266 5.8e-72 276.2 435 42.3
Rhsim06G0149700 Rhododendron simsii HOM05D004586 ORTHO05D005266 7.6e-72 275.8 418 41.4
Sed0007770 Sechium edule HOM05D004586 ORTHO05D005266 3.8e-71 273.5 475 39.8
Lj1C734T7 Lonicera japonica HOM05D004586 ORTHO05D005266 1.4e-70 271.6 294 53.1
SalBow1G4799 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.9e-70 271.2 384 51.0
SalBow7G1236 Salvia bowleyana HOM05D004586 ORTHO05D005266 1.9e-70 271.2 384 51.0
arahy.Tifrunner.gnm1.ann1.7D4Z5S Arachis hypogaea HOM05D004586 ORTHO05D005266 2.4e-70 270.8 441 41.3
PGR042G3101 Punica granatum HOM05D004586 ORTHO05D005266 1.6e-69 268.1 436 44.0
Lj3g0000702 Lotus japonicus HOM05D004586 ORTHO05D005266 4.6e-69 266.5 562 35.2
Medtr2g090095 Medicago truncatula HOM05D004586 ORTHO05D005266 4.6e-69 266.5 345 48.7
HanXRQChr14g0441421 Helianthus annuus HOM05D004586 ORTHO05D005266 3.9e-68 263.5 190 64.7
ClCG02G017410 Citrullus lanatus HOM05D004586 ORTHO05D005266 6.6e-68 262.7 377 43.0
TAR629G0893 Trochodendron aralioides HOM05D004586 ORTHO05D005266 8.7e-68 262.3 434 41.5
MSTRG.14187 Avicennia marina HOM05D004586 ORTHO05D005266 1.1e-67 261.9 437 41.0
ECA234G1777 Erigeron canadensis HOM05D004586 ORTHO05D005266 1.1e-67 261.9 189 65.6
CsaV3_2G036510 Cucumis sativus L. HOM05D004586 ORTHO05D005266 1.9e-67 261.2 497 40.8
MELO3C021880.2 Cucumis melo HOM05D004586 ORTHO05D005266 2.5e-67 260.8 443 40.2
PSO541G0834 Papaver somniferum HOM05D004586 ORTHO05D005266 2.5e-67 260.8 190 66.3
PSO675G0516 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-66 258.5 190 66.8
MBI02_g10548_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 2.8e-66 257.3 454 41.6
SGA_v2.0_scaffold159G37633 Striga asiatica HOM05D004586 ORTHO05D005266 2.8e-66 257.3 182 68.7
vmacro12267 Vaccinium macrocarpon HOM05D004586 ORTHO05D005266 3.6e-66 256.9 448 39.1
Cc00_g21120 Coffea canephora HOM05D004586 ORTHO05D005266 4.8e-66 256.5 430 40.9
HanXRQChr05g0140481 Helianthus annuus HOM05D004586 ORTHO05D005266 4.8e-66 256.5 416 41.1
SGA_v2.0_scaffold49G18309 Striga asiatica HOM05D004586 ORTHO05D005266 8.1e-66 255.8 360 44.7
TWI18G0514 Tripterygium wilfordii HOM05D004586 ORTHO05D005266 8.1e-66 255.8 504 38.3
Migut.H01030 Erythranthe guttata HOM05D004586 ORTHO05D005266 1.1e-65 255.4 405 49.1
MELO3C003861.2 Cucumis melo HOM05D004586 ORTHO05D005266 1.8e-65 254.6 433 39.7
Lsat_1_v5_gn_4_68860 Lactuca sativa HOM05D004586 ORTHO05D005266 2.4e-65 254.2 180 66.1
PGSC0003DMG400018364 Solanum tuberosum HOM05D004586 ORTHO05D005266 4.0e-65 253.4 439 40.1
COL.COLO4_08510 Corchorus olitorius HOM05D004586 ORTHO05D005266 6.9e-65 252.7 400 40.5
Sopen07g028400 Solanum pennellii HOM05D004586 ORTHO05D005266 1.5e-64 251.5 428 41.8
AUR62035735 Chenopodium quinoa HOM05D004586 ORTHO05D005266 2.6e-64 250.8 454 38.5
Sc12g0002770 Simmondsia chinensis HOM05D004586 ORTHO05D005266 5.8e-64 249.6 167 69.5
unitig_26.g9937 Utricularia gibba HOM05D004586 ORTHO05D005266 5.8e-64 249.6 184 65.2
Peaxi162Scf00007g02845 Petunia axillaris HOM05D004586 ORTHO05D005266 7.6e-64 249.2 410 41.2
THA.LOC104826023 Tarenaya hassleriana HOM05D004586 ORTHO05D005266 2.2e-63 247.7 361 42.9
AL1G13040 Arabidopsis lyrata HOM05D004586 ORTHO05D005266 2.9e-63 247.3 393 42.0
Solyc07g054460.4 Solanum lycopersicum HOM05D004586 ORTHO05D005266 1.9e-62 244.6 427 40.5
C05p01990 Brassica napus HOM05D004586 ORTHO05D005266 2.4e-62 244.2 368 43.5
Thhalv10006867m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 7.1e-62 242.7 362 42.8
BcaB02g06919 Brassica carinata HOM05D004586 ORTHO05D005266 9.3e-62 242.3 394 40.9
Carub.0001s0267 Capsella rubella HOM05D004586 ORTHO05D005266 1.2e-61 241.9 189 63.5
CAN.G78.83 Capsicum annuum HOM05D004586 ORTHO05D005266 2.7e-61 240.7 429 39.6
Sp1g02460 Schrenkiella parvula HOM05D004586 ORTHO05D005266 2.7e-61 240.7 372 43.3
AT1G03530 Arabidopsis thaliana HOM05D004586 ORTHO05D005266 3.5e-61 240.4 389 41.9
BcaC05g24523 Brassica carinata HOM05D004586 ORTHO05D005266 1.0e-60 238.8 370 46.8
BolC5t28977H Brassica oleracea HOM05D004586 ORTHO05D005266 1.0e-60 238.8 370 46.8
PSO384G2677 Papaver somniferum HOM05D004586 ORTHO05D005266 1.3e-60 238.4 176 64.8
BraA10t42477Z Brassica rapa HOM05D000330 ORTHO05D000209 3.9e-60 236.9 368 46.5
A10p02080 Brassica napus HOM05D000330 ORTHO05D005266 5.1e-60 236.5 395 47.8
EL10As5g23555 Beta vulgaris HOM05D004586 ORTHO05D005266 6.7e-60 236.1 178 63.5
Psat5g270160 Pisum sativum HOM05D004586 ORTHO05D005266 9.6e-59 232.3 330 42.4
Hund09647 Selenicereus undatus HOM05D004586 ORTHO05D005266 2.8e-58 230.7 434 39.6
CARHR002890 Cardamine hirsuta HOM05D004586 ORTHO05D005266 3.7e-58 230.3 391 39.6
TPR.G27075 Trifolium pratense HOM05D004586 ORTHO05D005266 8.1e-58 229.2 405 38.5
ATR0693G407 Amborella trichopoda HOM05D004586 ORTHO05D005266 1.1e-57 228.8 158 69.0
AUR62000198 Chenopodium quinoa HOM05D004586 ORTHO05D005266 6.9e-57 226.1 411 39.4
CAN.G996.7 Capsicum annuum HOM05D004586 ORTHO05D005266 3.4e-56 223.8 426 39.2
SHI10466 Sapria himalayana HOM05D004586 ORTHO05D005266 9.9e-56 222.2 208 55.3
Peaxi162Scf00485g00032 Petunia axillaris HOM05D004586 ORTHO05D005266 3.8e-55 220.3 418 40.2
Aa31LG1G20890 Aethionema arabicum HOM05D004586 ORTHO05D005266 3.2e-54 217.2 393 43.8
Dinv15471 Davidia involucrata HOM05D004586 ORTHO05D005266 1.6e-53 214.9 369 39.8
C08p00660 Brassica napus HOM05D004586 ORTHO05D005266 2.1e-53 214.5 192 58.3
CDE02G0135 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 1.0e-52 212.2 155 63.2
HPP92_014062 Vanilla planifolia HOM05D004586 ORTHO05D005266 1.0e-52 212.2 162 61.7
Os05g0502800 Oryza sativa ssp. japonica HOM05D004586 ORTHO05D005266 3.0e-52 210.7 353 38.8
A08p37340 Brassica napus HOM05D004586 ORTHO05D005266 6.7e-52 209.5 369 39.3
BraA08t35631Z Brassica rapa HOM05D004586 ORTHO05D005266 3.3e-51 207.2 367 41.7
Zm00001eb292050 Zea mays HOM05D004586 ORTHO05D005266 9.6e-51 205.7 164 59.1
DCAR_019194 Daucus carota HOM05D004586 ORTHO05D005266 1.6e-50 204.9 130 71.5
Nn1g03938 Nelumbo nucifera HOM05D004586 ORTHO05D005266 2.1e-50 204.5 168 60.1
Nitab4.5_0007732g0010 Nicotiana tabacum HOM05D004586 ORTHO05D005266 3.7e-50 203.8 154 63.0
SEGI_15076 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 3.7e-50 203.8 158 58.9
Ah.01g003940 Amaranthus hybridus HOM05D004586 ORTHO05D005266 3.1e-49 200.7 191 53.4
BolC8t46864H Brassica oleracea HOM05D004586 ORTHO05D005266 3.1e-49 200.7 187 54.0
Thhalv10024822m.g Eutrema salsugineum HOM05D004586 ORTHO05D005266 1.0e-47 195.7 161 57.8
CDE02G4059 Ceratophyllum demersum HOM05D004586 ORTHO05D005266 2.4e-41 174.5 155 56.1
SMO137G0274 Selaginella moellendorffii HOM05D004586 ORTHO05D005266 6.9e-41 172.9 136 58.8
Lalb_Chr22g0356411 Lupinus albus HOM05D004586 ORTHO05D005266 2.0e-40 171.4 132 62.9
CBR_g12767 Chara braunii HOM05D004586 ORTHO05D005266 2.1e-37 161.4 159 51.6
Pp3c14_14050 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.0e-36 159.1 137 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2920 Anthoceros agrestis HOM05D004586 ORTHO05D005266 3.9e-36 157.1 163 49.7
Mapoly0108s0039 Marchantia polymorpha HOM05D004586 ORTHO05D005266 6.7e-36 156.4 160 51.9
MBI02_g27225_MAGBIO Magnolia biondii HOM05D004586 ORTHO05D005266 8.8e-36 156.0 414 35.7
Pp3c10_10230 Physcomitrium patens HOM05D004586 ORTHO05D005266 1.5e-35 155.2 136 55.1
SEGI_36208 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.7e-35 153.3 122 56.6
Psat0s10217g0080 Pisum sativum HOM05D004586 ORTHO05D005266 1.7e-26 125.2 89 71.9
BcaB08g36102 Brassica carinata HOM05D004586 ORTHO05D005266 3.1e-25 120.9 97 61.9
BcaB01g00913 Brassica carinata HOM05D004586 ORTHO05D005266 1.5e-24 118.6 97 60.8
Medtr7g116780 Medicago truncatula HOM05D004586 ORTHO05D005266 1.6e-16 92.0 71 63.4
PSO339G0898 Papaver somniferum HOM05D004586 ORTHO05D005266 3.8e-15 87.4 77 54.5
DCAR_012988 Daucus carota HOM05D004586 ORTHO05D005266 2.3e-12 78.2 59 66.1
MCO05G032 Micromonas commoda HOM05D004586 ORTHO05D005266 3.0e-12 77.8 158 32.3
Cre10.g467100 Chlamydomonas reinhardtii HOM05D004586 ORTHO05D005266 2.6e-11 74.7 160 33.8
AL2G23840 Arabidopsis lyrata HOM05D020923 ORTHO05D021440 9.1e-09 66.2 105 37.1
Carub.0006s3370 Capsella rubella HOM05D020923 ORTHO05D021440 2.9e-07 61.2 105 36.2
SEGI_25704 Sequoiadendron giganteum HOM05D004586 ORTHO05D005266 5.0e-07 60.5 44 61.4


User provided reference genes

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