Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 0.0e+00 1111.3 566 100.0
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 5.5e-293 1010.4 552 93.3
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 8.6e-286 986.5 565 87.8
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 4.3e-285 984.2 563 88.8
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 2.8e-284 981.5 565 87.8
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.4e-283 979.2 567 88.0
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 2.3e-283 978.4 565 88.1
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 6.6e-278 960.3 567 86.6
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 9.5e-277 956.4 553 87.7
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 8.6e-270 933.3 566 85.2
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 1.1e-259 899.8 566 80.2
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 6.4e-257 890.6 559 80.5
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 1.9e-256 889.0 568 78.5
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 2.4e-256 888.6 565 79.1
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 2.1e-255 885.6 562 79.9
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 6.0e-255 884.0 563 79.0
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.9e-254 881.3 567 78.0
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.9e-253 879.0 567 78.0
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 2.5e-253 878.6 552 81.3
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 6.2e-252 874.0 566 78.3
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 8.1e-252 873.6 569 78.6
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 3.1e-251 871.7 572 78.3
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 6.9e-251 870.5 565 78.1
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 1.5e-250 869.4 564 78.7
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 3.4e-250 868.2 565 78.8
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 9.9e-250 866.7 568 77.1
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.3e-249 866.3 565 78.6
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.2e-249 865.5 556 79.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 2.9e-249 865.1 565 78.4
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 2.4e-248 862.1 552 79.3
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.7e-247 858.6 567 76.7
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 1.3e-246 856.3 566 77.2
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 3.0e-246 855.1 574 76.8
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 3.9e-246 854.7 566 75.6
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 4.3e-245 851.3 566 75.1
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 1.6e-244 849.4 566 74.6
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 3.6e-244 848.2 566 75.3
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 5.8e-242 840.9 627 70.8
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 1.9e-240 835.9 549 77.2
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.3e-238 829.7 559 74.2
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 5.1e-238 827.8 558 74.9
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 6.7e-238 827.4 572 74.1
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 2.5e-237 825.5 565 74.5
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 2.1e-236 822.4 565 74.2
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 3.7e-236 821.6 568 72.5
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.8e-235 819.3 564 73.4
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 3.1e-235 818.5 567 73.0
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 7.6e-234 813.9 558 72.9
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 4.9e-233 811.2 558 72.8
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 1.4e-232 809.7 558 72.9
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 3.2e-232 808.5 549 75.8
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 1.0e-230 803.5 563 71.9
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 1.3e-228 796.6 587 70.0
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 3.7e-228 795.0 567 72.0
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 8.2e-228 793.9 567 72.8
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 1.4e-227 793.1 567 72.0
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 3.1e-227 792.0 567 72.3
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 6.9e-227 790.8 566 72.1
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 1.2e-226 790.0 566 71.9
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.2e-226 790.0 568 70.4
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 1.2e-226 790.0 567 71.8
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 1.5e-226 789.6 562 71.9
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 2.6e-226 788.9 566 71.9
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 3.4e-226 788.5 565 71.5
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 4.5e-226 788.1 567 70.7
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 1.3e-225 786.6 576 70.3
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.3e-225 786.6 566 71.6
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 2.2e-225 785.8 568 72.0
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 3.2e-224 781.9 550 72.9
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 1.0e-222 776.9 605 68.6
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 9.7e-221 770.4 564 69.7
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 2.6e-218 762.3 588 67.9
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.0e-217 760.4 584 68.2
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 5.0e-217 758.1 557 69.5
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 4.2e-216 755.0 535 72.9
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 5.5e-216 754.6 569 67.8
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 1.2e-215 753.4 601 67.6
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 1.4e-214 750.0 571 70.8
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 3.9e-214 748.4 549 70.9
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 3.9e-214 748.4 568 68.1
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 6.7e-214 747.7 563 69.3
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 8.8e-214 747.3 551 71.0
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.5e-213 746.5 575 68.0
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 3.1e-211 738.8 563 67.1
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 5.3e-211 738.0 565 66.2
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 3.4e-210 735.3 579 67.2
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 1.0e-193 680.6 511 68.9
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 8.5e-193 677.6 430 82.3
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 1.5e-173 613.6 685 51.7
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.1e-171 607.4 430 72.3
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 3.3e-168 595.9 562 56.2
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 3.6e-167 592.4 577 55.6
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.9e-156 556.2 567 55.2
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 2.3e-153 546.6 566 52.1
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.4e-142 510.8 553 53.3
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 4.8e-119 432.6 324 70.1
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 3.4e-109 399.8 273 72.5
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.1e-98 364.0 275 67.6
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 4.5e-93 346.3 280 62.9
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 3.8e-92 343.2 222 78.8
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 4.8e-71 273.1 190 71.1
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 7.0e-54 216.1 166 65.7
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 2.7e-53 214.2 296 47.6
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 8.3e-47 192.6 240 42.5
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 6.6e-44 183.0 115 80.9
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 1.5e-40 171.8 147 60.5
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 7.5e-40 169.5 120 70.0
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 2.1e-37 161.4 116 70.7
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.1e-37 161.4 120 66.7
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 1.5e-32 145.2 184 49.5
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.7e-31 141.7 131 58.0
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 5.8e-24 116.7 96 58.3
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.2e-22 110.5 176 41.5
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 1.7e-20 105.1 130 44.6
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 4.3e-19 100.5 189 38.1
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 1.8e-17 95.1 82 62.2
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 8.4e-15 86.3 139 43.2
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 3.5e-13 80.9 89 48.3
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 3.3e-11 74.3 55 70.9
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.4e-09 68.9 176 32.4
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 3.1e-09 67.8 45 68.9
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 9.0e-09 66.2 96 40.6
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 2.6e-08 64.7 51 68.6
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 5.8e-08 63.5 37 81.1
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.3e-07 62.4 208 28.4
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 4.9e-07 60.5 153 32.0


User provided reference genes

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