Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G260700 Glycine max HOM05D002303 ORTHO05D007639 7.3e-89 330.5 162 100.0
Glyma.20G140800 Glycine max HOM05D002303 ORTHO05D007639 6.7e-66 254.2 132 91.7
TPR.G10028 Trifolium pratense HOM05D002303 ORTHO05D007639 7.6e-62 240.7 152 76.3
Psat4g130880 Pisum sativum HOM05D002303 ORTHO05D007639 8.4e-61 237.3 154 76.6
Phvul.011G153301 Phaseolus vulgaris HOM05D002303 ORTHO05D007639 1.9e-60 236.1 132 84.8
VMungo1127G1472 Vigna mungo HOM05D002303 ORTHO05D007639 1.9e-60 236.1 132 85.6
Medtr8g467040 Medicago truncatula HOM05D002303 ORTHO05D007639 2.5e-60 235.7 132 85.6
Lj3g0023309 Lotus japonicus HOM05D002303 ORTHO05D007639 1.2e-59 233.4 153 75.2
Ca_22984_v3 Cicer arietinum L. HOM05D002303 ORTHO05D007639 1.6e-59 233.0 154 74.7
Lalb_Chr01g0006291 Lupinus albus HOM05D002303 ORTHO05D007639 1.5e-57 226.5 132 81.1
QL08p014652 Quercus lobata HOM05D002303 ORTHO05D007639 2.1e-56 222.6 152 69.1
Cfa020474 Carpinus fangiana HOM05D002303 ORTHO05D007639 3.7e-56 221.9 143 72.0
Gorai.002G079300 Gossypium raimondii HOM05D002303 ORTHO05D007639 4.8e-56 221.5 152 69.7
Gohir.A01G071600 Gossypium hirsutum HOM05D002303 ORTHO05D007639 6.3e-56 221.1 152 69.7
Haze_09569 Corylus avellana HOM05D002303 ORTHO05D007639 1.8e-55 219.5 144 70.8
Gohir.D01G058500 Gossypium hirsutum HOM05D002303 ORTHO05D007639 1.8e-55 219.5 152 69.1
arahy.Tifrunner.gnm1.ann1.JSHU92 Arachis hypogaea HOM05D002303 ORTHO05D007639 2.4e-55 219.2 143 74.1
Manes.15G080400 Manihot esculenta HOM05D002303 ORTHO05D007639 2.4e-55 219.2 152 70.4
Thecc.07G058600 Theobroma cacao HOM05D002303 ORTHO05D007639 2.4e-55 219.2 152 68.4
arahy.Tifrunner.gnm1.ann1.MFBI28 Arachis hypogaea HOM05D002303 ORTHO05D007639 5.3e-55 218.0 143 74.1
Dinv02835 Davidia involucrata HOM05D002303 ORTHO05D007639 6.9e-55 217.6 152 68.4
GSVIVG01014543001 Vitis vinifera HOM05D002303 ORTHO05D007639 6.9e-55 217.6 143 72.0
COL.COLO4_09527 Corchorus olitorius HOM05D002303 ORTHO05D007639 1.0e-53 213.8 152 67.8
CSS0024301 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D007639 1.3e-53 213.4 152 65.8
Duzib268G0512 Durio zibethinus HOM05D002303 ORTHO05D007639 1.3e-53 213.4 143 70.6
TWI38G2363 Tripterygium wilfordii HOM05D002303 ORTHO05D007639 2.9e-53 212.2 143 70.6
AUR62029278 Chenopodium quinoa HOM05D002303 ORTHO05D007639 1.1e-52 210.3 143 70.6
Ciclev10008307m.g Citrus clementina HOM05D002303 ORTHO05D007639 1.1e-52 210.3 152 66.4
Nn1g03778 Nelumbo nucifera HOM05D002303 ORTHO05D007639 1.1e-52 210.3 154 63.0
Atru.chr2.3118 Acer truncatum HOM05D002303 ORTHO05D007639 1.4e-52 209.9 143 68.5
Atru.chr2.3125 Acer truncatum HOM05D002303 ORTHO05D007639 1.4e-52 209.9 143 68.5
AUR62041151 Chenopodium quinoa HOM05D002303 ORTHO05D007639 1.4e-52 209.9 143 70.6
Cc05_g12930 Coffea canephora HOM05D002303 ORTHO05D007639 1.4e-52 209.9 152 65.1
Potri.001G410500 Populus trichocarpa HOM05D002303 ORTHO05D007639 3.2e-52 208.8 143 70.6
CiPaw.11G180000 Carya illinoinensis HOM05D002303 ORTHO05D007639 4.2e-52 208.4 152 65.8
Nitab4.5_0002113g0100 Nicotiana tabacum HOM05D002303 ORTHO05D007639 4.2e-52 208.4 143 69.2
Sabra16G0276300 Salix brachista HOM05D002303 ORTHO05D007639 4.2e-52 208.4 144 68.8
Sabra16G0280700 Salix brachista HOM05D002303 ORTHO05D007639 7.2e-52 207.6 143 69.2
Eucgr.F03385 Eucalyptus grandis HOM05D002303 ORTHO05D007639 1.2e-51 206.8 143 66.4
Peaxi162Scf00760g00026 Petunia axillaris HOM05D002303 ORTHO05D007639 1.2e-51 206.8 131 73.3
Hund23363 Selenicereus undatus HOM05D002303 ORTHO05D007639 1.2e-51 206.8 155 64.5
Actinidia28700 Actinidia chinensis HOM05D002303 ORTHO05D007639 1.6e-51 206.5 152 65.8
Nitab4.5_0007261g0030 Nicotiana tabacum HOM05D002303 ORTHO05D007639 2.7e-51 205.7 143 67.8
Oeu052326.1 Olea europaea HOM05D002303 ORTHO05D007639 3.5e-51 205.3 152 65.1
Sc03g0009470 Simmondsia chinensis HOM05D002303 ORTHO05D007639 1.3e-50 203.4 154 64.3
ECA246G5178 Erigeron canadensis HOM05D002303 ORTHO05D007639 2.3e-50 202.6 143 69.2
RcHm_v2.0_Chr5g0036881 Rosa chinensis HOM05D002303 ORTHO05D007639 2.3e-50 202.6 137 69.3
Lj1A860T39 Lonicera japonica HOM05D002303 ORTHO05D007639 3.9e-50 201.8 143 66.4
BolC3t14116H Brassica oleracea HOM05D002303 ORTHO05D007639 6.7e-50 201.1 131 71.8
Migut.M01837 Erythranthe guttata HOM05D002303 ORTHO05D007639 6.7e-50 201.1 137 69.3
BraA03t10750Z Brassica rapa HOM05D002303 ORTHO05D007639 8.7e-50 200.7 131 71.0
Thhalv10013494m.g Eutrema salsugineum HOM05D002303 ORTHO05D007639 8.7e-50 200.7 131 71.0
Lsat_1_v5_gn_8_163300 Lactuca sativa HOM05D002303 ORTHO05D007639 8.7e-50 200.7 143 65.7
AT5G54520 Arabidopsis thaliana HOM05D002303 ORTHO05D007639 1.9e-49 199.5 143 65.0
BcaC01g06311 Brassica carinata HOM05D002303 ORTHO05D007639 3.3e-49 198.7 131 71.0
Prupe.4G196900 Prunus persica HOM05D002303 ORTHO05D007639 3.3e-49 198.7 152 61.8
RhsimUnG0255200 Rhododendron simsii HOM05D002303 ORTHO05D007639 3.3e-49 198.7 152 63.2
Sp6g16490 Schrenkiella parvula HOM05D002303 ORTHO05D007639 3.3e-49 198.7 131 68.7
vmacro09591 Vaccinium macrocarpon HOM05D002303 ORTHO05D007639 3.3e-49 198.7 152 63.2
C03p17060 Brassica napus HOM05D002303 ORTHO05D007639 4.3e-49 198.4 131 71.0
A03p14600 Brassica napus HOM05D002303 ORTHO05D007639 5.7e-49 198.0 131 69.5
FAN16G0687 Fragaria x ananassa HOM05D002303 ORTHO05D007639 5.7e-49 198.0 138 66.7
MD03G1215900 Malus domestica HOM05D002303 ORTHO05D007639 5.7e-49 198.0 152 63.8
MSTRG.6872 Avicennia marina HOM05D002303 ORTHO05D007639 7.4e-49 197.6 131 72.5
Lsat_1_v5_gn_5_5021 Lactuca sativa HOM05D002303 ORTHO05D007639 7.4e-49 197.6 143 65.7
FAN21G1165 Fragaria x ananassa HOM05D002303 ORTHO05D007639 9.7e-49 197.2 152 61.8
MBI02_g37283_MAGBIO Magnolia biondii HOM05D002303 ORTHO05D007639 9.7e-49 197.2 152 61.2
Ah.04g165230 Amaranthus hybridus HOM05D002303 ORTHO05D007639 2.2e-48 196.1 141 66.0
SGA_v2.0_scaffold495G52459 Striga asiatica HOM05D002303 ORTHO05D007639 2.2e-48 196.1 131 70.2
Aa31LG3G10470 Aethionema arabicum HOM05D002303 ORTHO05D007639 4.8e-48 194.9 131 68.7
FvH4_3g21450 Fragaria vesca HOM05D002303 ORTHO05D007639 1.1e-47 193.7 152 61.2
CARHR267800 Cardamine hirsuta HOM05D002303 ORTHO05D007639 1.8e-47 193.0 132 67.4
FAN11G3805 Fragaria x ananassa HOM05D002303 ORTHO05D007639 2.4e-47 192.6 152 60.5
unitig_8.g3262 Utricularia gibba HOM05D002303 ORTHO05D007639 2.4e-47 192.6 131 69.5
Carub.0008s1480 Capsella rubella HOM05D002303 ORTHO05D007639 9.0e-47 190.7 131 67.2
SalBow4G1991 Salvia bowleyana HOM05D002303 ORTHO05D007639 9.0e-47 190.7 132 66.7
THA.LOC104809285 Tarenaya hassleriana HOM05D002303 ORTHO05D007639 9.0e-47 190.7 143 62.2
DCAR_008699 Daucus carota HOM05D002303 ORTHO05D007639 1.2e-46 190.3 152 59.9
CsaV3_3G005620 Cucumis sativus L. HOM05D002303 ORTHO05D007639 1.5e-46 189.9 132 68.2
MELO3C016614.2 Cucumis melo HOM05D002303 ORTHO05D007639 2.0e-46 189.5 132 68.2
AL8G29890 Arabidopsis lyrata HOM05D002303 ORTHO05D007639 3.4e-46 188.7 143 60.1
PSO210G2368 Papaver somniferum HOM05D002303 ORTHO05D007639 7.7e-46 187.6 132 65.9
Aqoxy1G03964 Aquilegia oxysepala HOM05D002303 ORTHO05D007639 1.3e-45 186.8 132 61.4
ClCG10G006020 Citrullus lanatus HOM05D002303 ORTHO05D007639 1.3e-45 186.8 132 67.4
BcaB01g04298 Brassica carinata HOM05D002303 ORTHO05D007639 1.7e-45 186.4 144 61.1
PGR083G0747 Punica granatum HOM05D002303 ORTHO05D007639 5.0e-45 184.9 137 61.3
HPP92_022654 Vanilla planifolia HOM05D002303 ORTHO05D007639 1.1e-44 183.7 143 60.1
ATR0804G071 Amborella trichopoda HOM05D002303 ORTHO05D007639 3.6e-43 178.7 131 64.9
BcaB01g04312 Brassica carinata HOM05D002303 ORTHO05D007639 6.1e-43 177.9 125 67.2
Sopen04g004480 Solanum pennellii HOM05D002303 ORTHO05D007639 6.1e-43 177.9 121 69.4
Solyc04g009360.3 Solanum lycopersicum HOM05D002303 ORTHO05D007639 1.4e-42 176.8 118 70.3
PGSC0003DMG400032540 Solanum tuberosum HOM05D002303 ORTHO05D007639 1.4e-42 176.8 118 70.3
Actinidia35299 Actinidia chinensis HOM05D002303 ORTHO05D007639 2.5e-41 172.6 144 59.0
HanXRQChr05g0158911 Helianthus annuus HOM05D002303 ORTHO05D007639 7.4e-41 171.0 121 68.6
TAR624G0310 Trochodendron aralioides HOM05D002303 ORTHO05D007639 1.3e-40 170.2 115 68.7
Sed0022141 Sechium edule HOM05D002303 ORTHO05D007639 5.3e-39 164.9 125 62.4
SEGI_10698 Sequoiadendron giganteum HOM05D002303 ORTHO05D007639 1.0e-37 160.6 131 55.0
Zm00001eb118470 Zea mays HOM05D002303 ORTHO05D007639 1.1e-36 157.1 137 54.7
Zm00001eb164250 Zea mays HOM05D002303 ORTHO05D007639 1.1e-36 157.1 137 54.7
Os02g0319800 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D007639 1.6e-35 153.3 137 54.0
Mapoly0024s0099 Marchantia polymorpha HOM05D002303 ORTHO05D007639 1.0e-34 150.6 131 50.4
Pp3c11_840 Physcomitrium patens HOM05D002303 ORTHO05D007639 5.1e-34 148.3 131 45.8
AagrBONN_evm.TU.Sc2ySwM_228.1852 Anthoceros agrestis HOM05D002303 ORTHO05D007639 5.7e-33 144.8 131 49.6
Sed0007456 Sechium edule HOM05D002303 ORTHO05D007639 2.8e-32 142.5 126 55.6
Atru.chr2.3293 Acer truncatum HOM05D002303 ORTHO05D007639 7.0e-31 137.9 161 49.1
ECA236G1149 Erigeron canadensis HOM05D000037 ORTHO05D000419 1.5e-28 130.2 154 48.1
FAN25G1148 Fragaria x ananassa HOM05D002303 ORTHO05D007639 6.1e-27 124.8 103 54.4
Glyma.12G141100 Glycine max HOM05D002303 ORTHO05D007639 6.7e-26 121.3 58 93.1
Actinidia35293 Actinidia chinensis HOM05D002303 ORTHO05D007639 2.7e-22 109.4 83 61.4
SEGI_17343 Sequoiadendron giganteum HOM05D002303 ORTHO05D006504 5.0e-13 78.6 123 33.3
ATR0810G196 Amborella trichopoda HOM05D002303 ORTHO05D006504 8.5e-13 77.8 123 33.3
Eucgr.B03345 Eucalyptus grandis HOM05D002303 ORTHO05D006504 2.5e-12 76.3 123 31.7
TAR374G1747 Trochodendron aralioides HOM05D002303 ORTHO05D006504 2.5e-12 76.3 123 32.5
AT1G10580 Arabidopsis thaliana HOM05D002303 ORTHO05D006504 3.2e-12 75.9 123 33.3
AL1G21402 Arabidopsis lyrata HOM05D002303 ORTHO05D006504 4.2e-12 75.5 123 32.5
CARHR010740 Cardamine hirsuta HOM05D002303 ORTHO05D006504 4.2e-12 75.5 123 32.5
Carub.0001s1002 Capsella rubella HOM05D002303 ORTHO05D006504 5.5e-12 75.1 123 32.5
Sp1g09240 Schrenkiella parvula HOM05D002303 ORTHO05D006504 5.5e-12 75.1 123 32.5
BcaC05g24865 Brassica carinata HOM05D002303 ORTHO05D006504 9.5e-12 74.3 123 31.7
BcaC05g24944 Brassica carinata HOM05D002303 ORTHO05D006504 9.5e-12 74.3 123 31.7
A06p07370 Brassica napus HOM05D002303 ORTHO05D006504 9.5e-12 74.3 123 31.7
C05p08850 Brassica napus HOM05D002303 ORTHO05D006504 9.5e-12 74.3 123 31.7
BolC5t29633H Brassica oleracea HOM05D002303 ORTHO05D006504 9.5e-12 74.3 123 31.7
BraA06t23941Z Brassica rapa HOM05D002303 ORTHO05D006504 9.5e-12 74.3 123 31.7
Haze_27084 Corylus avellana HOM05D002303 ORTHO05D007639 9.5e-12 74.3 128 32.8
PGR102G1063 Punica granatum HOM05D002303 ORTHO05D006504 1.6e-11 73.6 123 30.9
Zm00001eb019350 Zea mays HOM05D002303 ORTHO05D006504 1.6e-11 73.6 123 30.1
Zm00001eb392750 Zea mays HOM05D002303 ORTHO05D006504 1.6e-11 73.6 123 30.1
Gohir.D07G176600 Gossypium hirsutum HOM05D002303 ORTHO05D006504 2.1e-11 73.2 123 30.9
Gorai.001G197400 Gossypium raimondii HOM05D002303 ORTHO05D006504 2.1e-11 73.2 123 30.9
Os03g0397500 Oryza sativa ssp. japonica HOM05D002303 ORTHO05D006504 2.1e-11 73.2 123 30.1
Peaxi162Scf00527g00063 Petunia axillaris HOM05D002303 ORTHO05D006504 2.7e-11 72.8 123 30.9
PRCOL_00001031 Prasinoderma coloniale HOM05D002303 ORTHO05D006504 2.7e-11 72.8 123 32.5
Solyc02g078970.4 Solanum lycopersicum HOM05D002303 ORTHO05D006504 3.6e-11 72.4 123 30.9
TWI36G0505 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.0e-10 70.9 123 29.3
Atru.chr11.2018 Acer truncatum HOM05D002303 ORTHO05D006504 1.4e-10 70.5 123 30.1
TWI18G0905 Tripterygium wilfordii HOM05D002303 ORTHO05D006504 1.4e-10 70.5 123 28.5
Glyma.12G141050 Glycine max HOM05D002303 ORTHO05D007639 1.8e-10 70.1 36 91.7
Gohir.A07G170300 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.8e-10 70.1 123 30.1
MD13G1091700 Malus domestica HOM05D002303 ORTHO05D006504 1.8e-10 70.1 123 30.1
MD16G1092300 Malus domestica HOM05D002303 ORTHO05D006504 1.8e-10 70.1 123 30.1
Oeu044822.1 Olea europaea HOM05D002303 ORTHO05D006504 2.3e-10 69.7 123 29.3
Lsat_1_v5_gn_9_45861 Lactuca sativa HOM05D002303 ORTHO05D006504 5.2e-10 68.6 123 30.9
Nitab4.5_0001170g0230 Nicotiana tabacum HOM05D002303 ORTHO05D006504 5.2e-10 68.6 123 29.3
Nitab4.5_0003676g0010 Nicotiana tabacum HOM05D002303 ORTHO05D006504 5.2e-10 68.6 123 29.3
Duzib170G0905 Durio zibethinus HOM05D002303 ORTHO05D007639 6.8e-10 68.2 74 48.6
Cfa009142 Carpinus fangiana HOM05D002303 ORTHO05D006504 2.0e-09 66.6 123 28.5
Haze_12176 Corylus avellana HOM05D002303 ORTHO05D006504 2.0e-09 66.6 123 28.5
Sopen02g023780 Solanum pennellii HOM05D002303 ORTHO05D006504 2.0e-09 66.6 123 29.3
PGSC0003DMG400022364 Solanum tuberosum HOM05D002303 ORTHO05D006504 2.0e-09 66.6 123 29.3
Hma1.2p1_0867F.1_g230200 Hydrangea macrophylla HOM05D002303 ORTHO05D006504 3.4e-09 65.9 123 29.3
Cre04.g226450 Chlamydomonas reinhardtii HOM05D002303 ORTHO05D006504 4.4e-09 65.5 134 30.6
Manes.12G029100 Manihot esculenta HOM05D002303 ORTHO05D006504 4.4e-09 65.5 123 28.5
VMungo0720G0741 Vigna mungo HOM05D002303 ORTHO05D006504 4.4e-09 65.5 123 29.3
GSVIVG01020240001 Vitis vinifera HOM05D002303 ORTHO05D006504 4.4e-09 65.5 123 28.5
Potri.010G064600 Populus trichocarpa HOM05D002303 ORTHO05D006504 5.7e-09 65.1 123 28.5
arahy.Tifrunner.gnm1.ann1.5RAP3T Arachis hypogaea HOM05D002303 ORTHO05D006504 9.8e-09 64.3 123 28.5
arahy.Tifrunner.gnm1.ann1.FDC534 Arachis hypogaea HOM05D002303 ORTHO05D006504 9.8e-09 64.3 123 28.5
Duzib168G1309 Durio zibethinus HOM05D002303 ORTHO05D006504 1.3e-08 63.9 123 27.6
Gohir.A05G001900 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.3e-08 63.9 123 27.6
Thecc.09G187500 Theobroma cacao HOM05D002303 ORTHO05D006504 1.3e-08 63.9 123 27.6
COL.COLO4_06925 Corchorus olitorius HOM05D002303 ORTHO05D006504 1.7e-08 63.5 123 27.6
Gohir.D05G002200 Gossypium hirsutum HOM05D002303 ORTHO05D006504 1.7e-08 63.5 123 26.8
Gorai.009G002100 Gossypium raimondii HOM05D002303 ORTHO05D006504 1.7e-08 63.5 123 26.8
Sabra08G0132000 Salix brachista HOM05D002303 ORTHO05D006504 1.7e-08 63.5 123 27.6
QL03p061244 Quercus lobata HOM05D002303 ORTHO05D006504 2.2e-08 63.2 123 27.6
Dinv24860 Davidia involucrata HOM05D002303 ORTHO05D006504 2.8e-08 62.8 123 27.6
RcHm_v2.0_Chr5g0051741 Rosa chinensis HOM05D002303 ORTHO05D006504 3.7e-08 62.4 124 29.8
Cc00_g31710 Coffea canephora HOM05D002303 ORTHO05D006504 8.3e-08 61.2 123 26.8
Cc01_g07870 Coffea canephora HOM05D002303 ORTHO05D006504 8.3e-08 61.2 123 26.8
Oeu003451.1 Olea europaea HOM05D002303 ORTHO05D006504 8.3e-08 61.2 123 26.8
Actinidia13510 Actinidia chinensis HOM05D002303 ORTHO05D006504 1.1e-07 60.8 123 26.0
ATR0810G235 Amborella trichopoda HOM05D002303 ORTHO05D006504 1.1e-07 60.8 123 27.6
Actinidia18732 Actinidia chinensis HOM05D002303 ORTHO05D007639 7.0e-07 58.2 150 31.3
CSS0001865 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 9.2e-07 57.8 107 28.0
CSS0020077 Camellia sinensis var. sinensis HOM05D002303 ORTHO05D006504 1.2e-06 57.4 123 25.2
Sed0003805 Sechium edule HOM05D002303 ORTHO05D006504 5.9e-06 55.1 121 25.6
QL04p079730 Quercus lobata HOM05D002303 ORTHO05D006504 7.7e-06 54.7 93 32.3


User provided reference genes

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