Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 2.3e-185 652.1 345 100.0
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 8.6e-180 633.6 345 97.1
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 1.7e-172 609.4 345 93.3
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 6.2e-170 600.9 346 92.2
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 4.6e-157 558.1 341 85.3
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 1.1e-153 547.0 349 83.7
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 9.3e-142 507.3 309 87.7
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 1.0e-140 503.8 346 81.5
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 1.0e-132 477.2 363 73.3
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 2.1e-130 469.5 355 74.6
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 3.1e-129 465.7 379 70.7
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 2.0e-128 463.0 363 73.0
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 2.6e-128 462.6 352 75.3
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 4.5e-128 461.8 379 70.4
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 1.7e-127 459.9 362 72.4
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 2.2e-127 459.5 365 71.8
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 3.8e-127 458.8 382 69.4
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 3.8e-127 458.8 382 69.4
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 5.0e-127 458.4 360 72.5
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 6.5e-127 458.0 358 71.5
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 1.9e-126 456.4 333 75.7
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 2.5e-126 456.1 294 84.0
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 4.2e-126 455.3 292 83.6
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 5.5e-126 454.9 359 72.4
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.2e-125 453.8 266 89.8
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.1e-125 453.0 334 74.3
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 2.1e-125 453.0 357 72.0
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 2.7e-125 452.6 285 85.6
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 3.6e-125 452.2 361 70.6
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 3.6e-125 452.2 354 71.5
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 3.6e-125 452.2 263 90.5
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 4.6e-125 451.8 344 74.4
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 1.3e-124 450.3 290 83.4
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 3.9e-124 448.7 293 83.3
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 3.9e-124 448.7 288 83.7
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 5.1e-124 448.4 293 83.6
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 5.1e-124 448.4 294 82.0
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 6.7e-124 448.0 286 83.6
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 6.7e-124 448.0 286 83.6
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 6.7e-124 448.0 290 82.8
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 1.1e-123 447.2 340 72.1
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 1.9e-123 446.4 277 85.6
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.7e-123 444.9 328 74.7
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 5.7e-123 444.9 286 83.2
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 5.7e-123 444.9 298 81.5
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 2.8e-122 442.6 336 72.6
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 4.8e-122 441.8 284 83.1
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 4.8e-122 441.8 266 86.8
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 4.8e-122 441.8 266 86.8
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 6.3e-122 441.4 263 87.8
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 8.2e-122 441.0 295 81.7
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 2.4e-121 439.5 355 71.0
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 3.1e-121 439.1 265 87.9
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 4.1e-121 438.7 283 82.3
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 5.3e-121 438.3 327 74.0
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 1.5e-120 436.8 266 86.8
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 2.0e-120 436.4 290 81.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.6e-120 436.0 291 82.5
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 2.6e-120 436.0 289 81.0
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 7.7e-120 434.5 291 81.8
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 1.7e-119 433.3 291 82.1
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.7e-119 433.3 288 81.2
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 2.2e-119 433.0 291 81.1
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 2.2e-119 433.0 291 81.1
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 5.0e-119 431.8 303 78.2
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 6.5e-119 431.4 302 77.5
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 8.5e-119 431.0 290 81.4
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 8.5e-119 431.0 291 80.8
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 1.9e-118 429.9 296 78.0
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 3.2e-118 429.1 271 84.5
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 7.2e-118 427.9 287 82.2
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 7.2e-118 427.9 291 80.4
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 9.4e-118 427.6 287 82.2
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 1.2e-117 427.2 271 84.1
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 2.1e-117 426.4 309 77.7
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 3.6e-117 425.6 290 79.7
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 1.0e-116 424.1 289 77.2
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 1.4e-116 423.7 318 73.9
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 1.8e-116 423.3 325 72.6
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.0e-116 422.5 378 65.6
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 3.9e-116 422.2 283 80.9
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 1.1e-115 420.6 287 80.8
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 1.7e-114 416.8 267 84.6
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 3.7e-114 415.6 273 78.4
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 4.1e-113 412.1 341 68.0
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 6.9e-113 411.4 258 84.5
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 2.2e-111 406.4 275 77.8
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 1.1e-110 404.1 341 66.0
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 3.9e-108 395.6 319 70.2
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 1.2e-104 384.0 308 69.5
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 2.0e-104 383.3 276 78.3
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 4.5e-104 382.1 352 65.3
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 1.0e-103 380.9 242 82.2
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 2.9e-103 379.4 284 75.4
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 6.5e-103 378.3 303 71.6
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.1e-102 377.5 258 78.3
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 1.1e-102 377.5 246 82.1
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 3.2e-102 375.9 300 68.0
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 4.2e-102 375.6 319 68.0
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 5.2e-100 368.6 333 66.4
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 1.1e-97 360.9 257 74.7
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 5.3e-97 358.6 223 84.3
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 7.0e-97 358.2 232 83.6
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 5.0e-95 352.1 344 59.3
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.8e-90 335.5 195 89.7
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 1.3e-87 327.4 267 68.9
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 3.8e-87 325.9 262 68.7
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 1.2e-83 314.3 260 65.4
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 1.3e-74 284.3 243 67.1
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 1.6e-72 277.3 244 67.2
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 3.1e-68 263.1 244 58.2
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 5.2e-68 262.3 273 56.0
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 3.3e-62 243.0 277 52.3
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 6.2e-61 238.8 271 53.9
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 4.0e-60 236.1 230 62.2
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 3.0e-55 219.9 230 60.0
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 8.6e-55 218.4 167 72.5
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 1.7e-47 194.1 135 77.8
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.5e-46 191.0 140 77.9
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 1.0e-39 168.3 98 89.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 1.3e-37 161.4 142 67.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 4.8e-37 159.5 204 55.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 2.4e-33 147.1 93 82.8
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 2.3e-31 140.6 157 55.4
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 6.7e-31 139.0 157 54.8
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 4.0e-28 129.8 90 75.6
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 2.1e-21 107.5 80 72.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.4e-17 94.7 96 60.4
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 6.0e-16 89.4 60 78.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 8.2e-13 79.0 225 32.4
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 2.0e-11 74.3 47 83.0
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 7.4e-06 55.8 41 68.3
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 9.7e-06 55.5 29 96.6


User provided reference genes

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