Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G252800 Glycine max HOM05D002927 ORTHO05D022232 7.4e-33 143.3 72 100.0
Glyma.13G027850 Glycine max HOM05D002927 ORTHO05D022232 7.4e-25 116.7 69 88.4
Glyma.08G207800 Glycine max HOM05D002927 ORTHO05D003841 3.7e-24 114.4 66 87.9
Glyma.07G034300 Glycine max HOM05D002927 ORTHO05D003841 1.1e-23 112.8 66 86.4
Dinv30530 Davidia involucrata HOM05D002927 ORTHO05D003841 1.5e-22 109.0 66 83.3
VMungo0331G1773 Vigna mungo HOM05D002927 ORTHO05D003841 2.6e-22 108.2 66 81.8
Phvul.010G151600 Phaseolus vulgaris HOM05D002927 ORTHO05D003841 1.3e-21 105.9 66 81.8
PGR102G2510 Punica granatum HOM05D002927 ORTHO05D003841 1.7e-21 105.5 66 78.8
Lalb_Chr25g0279601 Lupinus albus HOM05D002927 ORTHO05D003841 5.0e-21 104.0 66 78.8
Cpa.g.sc10.167 Carica papaya HOM05D002927 ORTHO05D022232 6.5e-21 103.6 66 80.3
Gorai.011G078200 Gossypium raimondii HOM05D002927 ORTHO05D003841 8.4e-21 103.2 66 80.3
Oeu063956.1 Olea europaea HOM05D002927 ORTHO05D003841 8.4e-21 103.2 66 77.3
Dinv38060 Davidia involucrata HOM05D002927 ORTHO05D003841 1.4e-20 102.4 66 80.3
Potri.001G178000 Populus trichocarpa HOM05D002927 ORTHO05D003841 1.9e-20 102.1 66 80.3
MD09G1215200 Malus domestica HOM05D002927 ORTHO05D003841 2.5e-20 101.7 66 78.8
Sabra03G0032300 Salix brachista HOM05D002927 ORTHO05D003841 2.5e-20 101.7 66 80.3
Thecc.06G082500 Theobroma cacao HOM05D002927 ORTHO05D003841 2.5e-20 101.7 66 77.3
Nn8g39281 Nelumbo nucifera HOM05D002927 ORTHO05D003841 3.2e-20 101.3 66 75.8
Prupe.3G074300 Prunus persica HOM05D002927 ORTHO05D003841 3.2e-20 101.3 66 78.8
arahy.Tifrunner.gnm1.ann1.A9FW4X Arachis hypogaea HOM05D002927 ORTHO05D003841 5.5e-20 100.5 66 80.3
arahy.Tifrunner.gnm1.ann1.QQR1AK Arachis hypogaea HOM05D002927 ORTHO05D003841 5.5e-20 100.5 66 80.3
Lj9C506T2 Lonicera japonica HOM05D002927 ORTHO05D003841 7.1e-20 100.1 66 77.3
Sabra01G0148600 Salix brachista HOM05D002927 ORTHO05D003841 7.1e-20 100.1 66 80.3
Ca_01105_v3 Cicer arietinum L. HOM05D002927 ORTHO05D003841 9.3e-20 99.8 66 78.8
TWI12G0585 Tripterygium wilfordii HOM05D002927 ORTHO05D003841 9.3e-20 99.8 66 75.8
COL.COLO4_30327 Corchorus olitorius HOM05D002927 ORTHO05D003841 1.2e-19 99.4 66 74.2
Lalb_Chr14g0373541 Lupinus albus HOM05D002927 ORTHO05D003841 1.2e-19 99.4 66 77.3
MD17G1197900 Malus domestica HOM05D002927 ORTHO05D003841 1.2e-19 99.4 66 75.8
TAR624G0871 Trochodendron aralioides HOM05D002927 ORTHO05D003841 1.6e-19 99.0 66 74.2
FAN09G4597 Fragaria x ananassa HOM05D002927 ORTHO05D003841 2.1e-19 98.6 64 81.2
Gohir.A05G127400 Gossypium hirsutum HOM05D002927 ORTHO05D003841 2.1e-19 98.6 66 78.8
Haze_16459 Corylus avellana HOM05D002927 ORTHO05D003841 2.7e-19 98.2 66 77.3
Duzib235G0335 Durio zibethinus HOM05D002927 ORTHO05D003841 2.7e-19 98.2 66 77.3
Lalb_Chr24g0395741 Lupinus albus HOM05D002927 ORTHO05D003841 2.7e-19 98.2 66 75.8
Medtr2g102435 Medicago truncatula HOM05D002927 ORTHO05D003841 2.7e-19 98.2 66 77.3
Nn2g11837 Nelumbo nucifera HOM05D002927 ORTHO05D003841 2.7e-19 98.2 66 77.3
Oeu033496.1 Olea europaea HOM05D002927 ORTHO05D003841 2.7e-19 98.2 62 80.6
TPR.G24164 Trifolium pratense HOM05D002927 ORTHO05D003841 2.7e-19 98.2 66 74.2
Atru.chr1.3222 Acer truncatum HOM05D002927 ORTHO05D003841 3.5e-19 97.8 66 74.2
Cfa002048 Carpinus fangiana HOM05D002927 ORTHO05D003841 3.5e-19 97.8 66 75.8
CiPaw.02G152400 Carya illinoinensis HOM05D002927 ORTHO05D003841 3.5e-19 97.8 66 75.8
Sed0022010 Sechium edule HOM05D002927 ORTHO05D003841 3.5e-19 97.8 66 74.2
TAR383G0846 Trochodendron aralioides HOM05D002927 ORTHO05D003841 3.5e-19 97.8 66 74.2
Actinidia01792 Actinidia chinensis HOM05D002927 ORTHO05D003841 4.6e-19 97.4 66 74.2
DCAR_021318 Daucus carota HOM05D002927 ORTHO05D003841 4.6e-19 97.4 66 75.8
FAN02G2217 Fragaria x ananassa HOM05D002927 ORTHO05D003841 4.6e-19 97.4 66 77.3
FAN05G2514 Fragaria x ananassa HOM05D002927 ORTHO05D003841 4.6e-19 97.4 66 77.3
Gohir.A02G122600 Gossypium hirsutum HOM05D002927 ORTHO05D003841 4.6e-19 97.4 66 74.2
Gohir.A10G078900 Gossypium hirsutum HOM05D002927 ORTHO05D003841 4.6e-19 97.4 66 78.8
Glyma.15G013000 Glycine max HOM05D002927 ORTHO05D003841 6.1e-19 97.1 66 74.2
Gohir.D05G128300 Gossypium hirsutum HOM05D002927 ORTHO05D003841 6.1e-19 97.1 66 77.3
Gorai.009G132500 Gossypium raimondii HOM05D002927 ORTHO05D003841 6.1e-19 97.1 66 77.3
Manes.11G052000 Manihot esculenta HOM05D002927 ORTHO05D003841 7.9e-19 96.7 66 77.3
Medtr4g011890 Medicago truncatula HOM05D002927 ORTHO05D003841 7.9e-19 96.7 66 74.2
Phvul.005G172700 Phaseolus vulgaris HOM05D002927 ORTHO05D003841 7.9e-19 96.7 66 74.2
Potri.003G056700 Populus trichocarpa HOM05D002927 ORTHO05D003841 7.9e-19 96.7 66 77.3
VMungo1080G1114 Vigna mungo HOM05D002927 ORTHO05D003841 7.9e-19 96.7 66 74.2
Actinidia15825 Actinidia chinensis HOM05D002927 ORTHO05D003841 1.0e-18 96.3 66 74.2
CiPaw.01G240700 Carya illinoinensis HOM05D002927 ORTHO05D003841 1.0e-18 96.3 66 77.3
Duzib192G1045 Durio zibethinus HOM05D002927 ORTHO05D003841 1.0e-18 96.3 66 75.8
Nitab4.5_0000351g0230 Nicotiana tabacum HOM05D002927 ORTHO05D003841 1.0e-18 96.3 66 75.8
Nitab4.5_0002327g0070 Nicotiana tabacum HOM05D002927 ORTHO05D003841 1.0e-18 96.3 66 75.8
Sed0021699 Sechium edule HOM05D002927 ORTHO05D003841 1.0e-18 96.3 66 72.7
Lj3g0020255 Lotus japonicus HOM05D002927 ORTHO05D003841 1.3e-18 95.9 66 75.8
TWI75G0487 Tripterygium wilfordii HOM05D002927 ORTHO05D003841 1.3e-18 95.9 66 74.2
Ca_20406_v3 Cicer arietinum L. HOM05D002927 ORTHO05D003841 1.8e-18 95.5 66 74.2
Cc04_g03600 Coffea canephora HOM05D002927 ORTHO05D003841 1.8e-18 95.5 66 77.3
FvH4_6g30900 Fragaria vesca HOM05D002927 ORTHO05D003841 1.8e-18 95.5 66 75.8
FAN14G3898 Fragaria x ananassa HOM05D002927 ORTHO05D003841 1.8e-18 95.5 66 75.8
Lj3g0010300 Lotus japonicus HOM05D002927 ORTHO05D003841 1.8e-18 95.5 66 74.2
Manes.04G121200 Manihot esculenta HOM05D002927 ORTHO05D003841 1.8e-18 95.5 66 74.2
ECA232G1494 Erigeron canadensis HOM05D002927 ORTHO05D003841 2.3e-18 95.1 66 74.2
Glyma.13G360900 Glycine max HOM05D002927 ORTHO05D003841 2.3e-18 95.1 66 72.7
Psat5g299320 Pisum sativum HOM05D002927 ORTHO05D003841 2.3e-18 95.1 66 72.7
RcHm_v2.0_Chr2g0137391 Rosa chinensis HOM05D002927 ORTHO05D003841 2.3e-18 95.1 66 74.2
CSS0017782 Camellia sinensis var. sinensis HOM05D002927 ORTHO05D003841 3.0e-18 94.7 66 72.7
Hma1.2p1_0682F.1_g202640 Hydrangea macrophylla HOM05D002927 ORTHO05D003841 3.0e-18 94.7 66 75.8
Lj5C63T3 Lonicera japonica HOM05D002927 ORTHO05D003841 3.0e-18 94.7 66 74.2
Rhsim08G0218500 Rhododendron simsii HOM05D002927 ORTHO05D003841 3.0e-18 94.7 66 72.7
TPR.G37235 Trifolium pratense HOM05D002927 ORTHO05D003841 3.0e-18 94.7 66 72.7
Ciclev10024839m.g Citrus clementina HOM05D002927 ORTHO05D003841 3.9e-18 94.4 66 74.2
Nitab4.5_0003159g0060 Nicotiana tabacum HOM05D002927 ORTHO05D003841 3.9e-18 94.4 66 69.7
Psat7g253400 Pisum sativum HOM05D002927 ORTHO05D003841 3.9e-18 94.4 66 71.2
vmacro18935 Vaccinium macrocarpon HOM05D002927 ORTHO05D003841 3.9e-18 94.4 66 71.2
Sopen06g025070 Solanum pennellii HOM05D002927 ORTHO05D003841 5.1e-18 94.0 66 71.2
CAN.G395.20 Capsicum annuum HOM05D002927 ORTHO05D003841 6.7e-18 93.6 66 71.2
Lsat_1_v5_gn_4_103500 Lactuca sativa HOM05D002927 ORTHO05D003841 8.7e-18 93.2 66 71.2
Peaxi162Scf00015g00253 Petunia axillaris HOM05D002927 ORTHO05D003841 8.7e-18 93.2 66 69.7
A07p45260 Brassica napus HOM05D002927 ORTHO05D003841 1.1e-17 92.8 66 74.2
ClCG09G002330 Citrullus lanatus HOM05D002927 ORTHO05D003841 1.1e-17 92.8 66 72.7
Thhalv10018100m.g Eutrema salsugineum HOM05D002927 ORTHO05D003841 1.1e-17 92.8 66 74.2
Peaxi162Scf00207g00840 Petunia axillaris HOM05D002927 ORTHO05D003841 1.1e-17 92.8 66 72.7
Aqoxy7G01853 Aquilegia oxysepala HOM05D002927 ORTHO05D003841 1.5e-17 92.4 66 72.7
BraA07t32030Z Brassica rapa HOM05D002927 ORTHO05D003841 1.5e-17 92.4 66 72.7
Solyc06g066790.3 Solanum lycopersicum HOM05D002927 ORTHO05D003841 1.5e-17 92.4 66 69.7
Psat1g029880 Pisum sativum HOM05D002927 ORTHO05D003841 1.9e-17 92.0 66 69.7
ATR0037G015 Amborella trichopoda HOM05D002927 ORTHO05D003841 2.5e-17 91.7 66 68.2
CsaV3_7G032990 Cucumis sativus L. HOM05D002927 ORTHO05D003841 2.5e-17 91.7 66 72.7
Hund06600 Selenicereus undatus HOM05D002927 ORTHO05D003841 3.3e-17 91.3 66 71.2
HanXRQChr10g0314931 Helianthus annuus HOM05D002927 ORTHO05D003841 4.3e-17 90.9 66 71.2
PSO063G0077 Papaver somniferum HOM05D002927 ORTHO05D003841 4.3e-17 90.9 66 69.7
PSO782G4571 Papaver somniferum HOM05D002927 ORTHO05D003841 4.3e-17 90.9 66 69.7
SalBow2G0578 Salvia bowleyana HOM05D002927 ORTHO05D003841 4.3e-17 90.9 66 71.2
MSTRG.11092 Avicennia marina HOM05D002927 ORTHO05D003841 5.7e-17 90.5 66 69.7
SGA_v2.0_scaffold37G14805 Striga asiatica HOM05D002927 ORTHO05D003841 5.7e-17 90.5 66 72.7
C06p54110 Brassica napus HOM05D002927 ORTHO05D003841 7.4e-17 90.1 66 71.2
BolC6t40424H Brassica oleracea HOM05D002927 ORTHO05D003841 7.4e-17 90.1 66 71.2
Ah.01g020990 Amaranthus hybridus HOM05D002927 ORTHO05D003841 9.7e-17 89.7 66 71.2
Eucgr.F03005 Eucalyptus grandis HOM05D002927 ORTHO05D003841 9.7e-17 89.7 66 66.7
unitig_21.g20350 Utricularia gibba HOM05D002927 ORTHO05D003841 9.7e-17 89.7 66 68.2
Aa31LG4G680 Aethionema arabicum HOM05D002927 ORTHO05D003841 1.3e-16 89.4 66 72.7
CAN.G438.51 Capsicum annuum HOM05D002927 ORTHO05D003841 1.3e-16 89.4 66 68.2
Carub.0002s2716 Capsella rubella HOM05D002927 ORTHO05D003841 1.6e-16 89.0 66 71.2
MELO3C023369.2 Cucumis melo HOM05D002927 ORTHO05D003841 1.6e-16 89.0 66 71.2
Sp5g35400 Schrenkiella parvula HOM05D002927 ORTHO05D003841 1.6e-16 89.0 66 71.2
ECA234G1721 Erigeron canadensis HOM05D002927 ORTHO05D003841 2.2e-16 88.6 66 69.7
THA.LOC104812472 Tarenaya hassleriana HOM05D002927 ORTHO05D003841 2.2e-16 88.6 66 69.7
THA.LOC104813572 Tarenaya hassleriana HOM05D002927 ORTHO05D003841 2.8e-16 88.2 66 69.7
AL2G41090 Arabidopsis lyrata HOM05D002927 ORTHO05D003841 3.7e-16 87.8 66 69.7
AT1G80410 Arabidopsis thaliana HOM05D002927 ORTHO05D003841 3.7e-16 87.8 66 69.7
DCAR_016229 Daucus carota HOM05D002927 ORTHO05D003841 3.7e-16 87.8 58 75.9
Lsat_1_v5_gn_5_129901 Lactuca sativa HOM05D002927 ORTHO05D003841 3.7e-16 87.8 66 68.2
Solyc03g120350.3 Solanum lycopersicum HOM05D002927 ORTHO05D003841 3.7e-16 87.8 66 66.7
Sopen03g039240 Solanum pennellii HOM05D002927 ORTHO05D003841 3.7e-16 87.8 66 66.7
PGSC0003DMG400002639 Solanum tuberosum HOM05D002927 ORTHO05D003841 3.7e-16 87.8 66 66.7
HanXRQChr16g0501061 Helianthus annuus HOM05D002927 ORTHO05D003841 4.8e-16 87.4 66 69.7
THA.LOC104808208 Tarenaya hassleriana HOM05D002927 ORTHO05D003841 4.8e-16 87.4 66 68.2
CDE07G0468 Ceratophyllum demersum HOM05D002927 ORTHO05D003841 6.3e-16 87.0 66 68.2
EL10Ac9g21989 Beta vulgaris HOM05D002927 ORTHO05D003841 1.1e-15 86.3 66 66.7
HanXRQChr14g0455941 Helianthus annuus HOM05D002927 ORTHO05D003841 1.8e-15 85.5 66 66.7
Sc12g0009020 Simmondsia chinensis HOM05D002927 ORTHO05D003841 1.8e-15 85.5 66 65.2
Sc12g0009150 Simmondsia chinensis HOM05D002927 ORTHO05D003841 1.8e-15 85.5 66 65.2
CANSAT56G4360 Cannabis sativa HOM05D002927 ORTHO05D003841 2.4e-15 85.1 66 69.7
HPP92_003639 Vanilla planifolia HOM05D002927 ORTHO05D003841 2.4e-15 85.1 66 65.2
Migut.I00844 Erythranthe guttata HOM05D002927 ORTHO05D003841 3.1e-15 84.7 66 68.2
GSVIVG01017154001 Vitis vinifera HOM05D002927 ORTHO05D003841 3.1e-15 84.7 66 69.7
MSTRG.22704 Avicennia marina HOM05D002927 ORTHO05D003841 9.0e-15 83.2 66 66.7
BcaB02g07275 Brassica carinata HOM05D002927 ORTHO05D003841 9.0e-15 83.2 66 68.2
AUR62011613 Chenopodium quinoa HOM05D002927 ORTHO05D003841 1.2e-14 82.8 66 65.2
AUR62016429 Chenopodium quinoa HOM05D002927 ORTHO05D003841 1.2e-14 82.8 66 65.2
CARHR074830 Cardamine hirsuta HOM05D002927 ORTHO05D003841 3.4e-14 81.3 66 66.7
Zm00001eb159790 Zea mays HOM05D002927 ORTHO05D003841 3.4e-14 81.3 66 60.6
A07p26660 Brassica napus HOM05D002927 ORTHO05D003841 4.5e-14 80.9 66 66.7
BraA07t30309Z Brassica rapa HOM05D002927 ORTHO05D003841 4.5e-14 80.9 66 66.7
BcaB05g25270 Brassica carinata HOM05D002927 ORTHO05D003841 5.9e-14 80.5 66 66.7
BolC2t09744H Brassica oleracea HOM05D002927 ORTHO05D003841 7.7e-14 80.1 66 66.7
Os01g0617500 Oryza sativa ssp. japonica HOM05D002927 ORTHO05D003841 1.0e-13 79.7 66 60.6
BcaC03g15969 Brassica carinata HOM05D002927 ORTHO05D003841 3.8e-13 77.8 66 65.2
C02p37340 Brassica napus HOM05D002927 ORTHO05D003841 3.8e-13 77.8 66 65.2
SHI09685 Sapria himalayana HOM05D002927 ORTHO05D003841 3.8e-13 77.8 63 63.5
SEGI_16698 Sequoiadendron giganteum HOM05D002927 ORTHO05D003841 5.0e-13 77.4 66 60.6
BcaC08g45310 Brassica carinata HOM05D002927 ORTHO05D003841 8.5e-13 76.6 66 63.6
C06p29140 Brassica napus HOM05D002927 ORTHO05D003841 8.5e-13 76.6 66 63.6
A02p23570 Brassica napus HOM05D002927 ORTHO05D003841 1.4e-12 75.9 66 63.6
BraA02t07350Z Brassica rapa HOM05D002927 ORTHO05D003841 1.4e-12 75.9 66 63.6
Gorai.002G058200 Gossypium raimondii HOM05D002927 ORTHO05D003841 1.2e-11 72.8 66 60.6
Duzib063G0008 Durio zibethinus HOM05D002927 ORTHO05D022232 7.4e-09 63.5 58 62.1
Mapoly0079s0051 Marchantia polymorpha HOM05D002927 ORTHO05D003841 1.7e-08 62.4 66 50.0
BolC6t38078H Brassica oleracea HOM05D002927 ORTHO05D003841 4.8e-08 60.8 66 56.1
Pp3c10_20750 Physcomitrium patens HOM05D002927 ORTHO05D003841 4.8e-08 60.8 66 48.5
Pp3c4_20560 Physcomitrium patens HOM05D002927 ORTHO05D003841 4.8e-08 60.8 66 47.0
CBR_g51323 Chara braunii HOM05D002927 ORTHO05D003841 8.2e-08 60.1 66 48.5
Nitab4.5_0003885g0030 Nicotiana tabacum HOM05D002927 ORTHO05D003841 8.2e-08 60.1 58 55.2
AagrBONN_evm.TU.Sc2ySwM_228.5803 Anthoceros agrestis HOM05D002927 ORTHO05D003841 1.1e-07 59.7 66 50.0
SMO364G0531 Selaginella moellendorffii HOM05D002927 ORTHO05D003841 4.1e-07 57.8 65 49.2
Pp3c3_24080 Physcomitrium patens HOM05D002927 ORTHO05D003841 1.2e-06 56.2 66 43.9


User provided reference genes

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