Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 3039.2 1745 100.0
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 0.0e+00 2926.3 1623 96.7
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 0.0e+00 2329.3 1668 77.2
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 0.0e+00 1908.3 1646 68.2
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 0.0e+00 1848.2 1399 74.1
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 0.0e+00 1749.9 1653 61.6
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 0.0e+00 1748.4 1640 62.3
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 0.0e+00 1747.3 1639 62.1
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 1691.4 1663 60.4
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 0.0e+00 1680.6 1714 58.3
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 0.0e+00 1632.8 1660 58.7
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1131.7 1708 44.7
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1109.4 1712 43.1
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 0.0e+00 1087.0 933 63.6
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1084.7 1694 43.2
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 7.2e-307 1058.1 1683 43.6
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 7.2e-299 1031.6 1695 42.2
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 7.2e-299 1031.6 1695 42.2
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 5.5e-291 1005.4 1736 40.3
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 1.2e-290 1004.2 1690 41.9
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 1.0e-284 984.6 1757 40.3
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.7e-284 983.8 1684 42.0
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 4.2e-283 979.2 1739 41.5
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 2.4e-278 963.4 1723 41.6
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 9.1e-278 961.4 1727 40.6
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 1.3e-276 957.6 1773 40.7
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 3.6e-274 949.5 1732 39.4
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 3.7e-271 939.5 1797 39.5
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 5.4e-270 935.6 1690 40.9
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 7.0e-270 935.3 1670 40.1
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 5.7e-264 915.6 1697 38.9
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 7.5e-264 915.2 1693 38.5
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 2.9e-260 903.3 1734 39.2
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 1.6e-253 880.9 1680 38.9
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.0e-252 875.9 1663 38.6
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 2.3e-249 867.1 1599 38.7
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 1.5e-248 864.4 1707 38.1
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 2.2e-247 860.5 1819 36.3
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 1.3e-244 851.3 1646 39.0
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 3.1e-241 840.1 1782 36.8
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 5.8e-240 835.9 1760 36.4
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 9.8e-240 835.1 1743 37.2
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 1.7e-239 834.3 1781 36.9
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 6.4e-239 832.4 1736 37.4
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 3.0e-236 823.5 1738 37.5
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 4.3e-235 819.7 1805 35.8
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 1.2e-234 818.1 1665 37.8
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 2.1e-234 817.4 1694 37.5
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 8.1e-234 815.5 1660 37.7
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 2.4e-230 803.9 1689 38.3
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 3.5e-229 800.0 1751 36.9
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 3.5e-229 800.0 1749 36.1
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 1.9e-227 794.3 1690 36.3
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 8.9e-225 785.4 1843 36.2
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.7e-223 781.2 1625 38.1
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.2e-223 780.8 1751 35.6
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.4e-222 776.2 1840 35.5
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 6.6e-220 769.2 1259 42.0
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.1e-219 768.5 1725 35.4
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.1e-218 764.2 2084 33.3
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 1.4e-214 751.5 1728 35.3
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.6e-213 748.0 1712 35.5
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 1.6e-213 748.0 1776 35.3
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 3.3e-211 740.3 1627 35.5
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 2.4e-209 734.2 1703 34.9
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 7.6e-208 729.2 1652 35.7
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 1.2e-205 721.8 1745 35.8
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 2.8e-202 710.7 1651 35.2
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 4.5e-200 703.4 1674 35.4
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 2.7e-197 694.1 1691 34.2
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 5.1e-196 689.9 1124 40.2
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 4.8e-194 683.3 1692 35.4
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 4.8e-194 683.3 1558 36.0
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 2.5e-190 671.0 1712 35.0
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 9.3e-190 669.1 1651 33.1
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 2.1e-189 667.9 1679 34.7
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 8.2e-186 656.0 1714 35.4
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 9.4e-182 642.5 1647 34.5
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 8.0e-173 612.8 1725 31.1
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 4.8e-170 603.6 1626 31.5
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 4.1e-161 573.9 1638 31.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 5.7e-147 526.9 1634 30.4
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 5.4e-137 493.8 478 53.1
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 5.0e-135 487.3 1450 32.0
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.5e-128 464.5 1392 32.0
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.5e-128 464.5 1392 32.0
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.9e-126 458.8 976 39.7
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 3.1e-116 424.9 917 36.5
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 6.0e-112 410.6 872 35.1
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 3.0e-111 408.3 787 36.7
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 3.6e-109 401.4 431 49.4
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.2e-105 387.9 846 36.6
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 1.3e-101 376.3 242 79.8
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 6.4e-90 337.4 877 31.2
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.8e-87 329.3 923 38.4
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 9.6e-86 323.6 1106 27.8
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 8.4e-82 310.5 862 32.4
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 1.6e-80 306.2 1012 28.2
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.6e-72 279.6 834 33.8
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 9.7e-70 270.4 471 37.2
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 4.8e-69 268.1 1050 28.3
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.0e-66 260.4 990 30.8
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 2.5e-65 255.8 1708 24.6
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 4.2e-65 255.0 636 30.8
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.6e-64 253.1 596 33.7
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 1.7e-61 243.0 290 49.3
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 2.5e-57 229.2 492 42.5
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 3.9e-55 221.9 841 31.5
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 3.3e-54 218.8 231 51.9
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 9.7e-54 217.2 276 46.7
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.0e-50 207.2 189 58.2
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.1e-49 203.8 231 46.8
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 2.1e-48 199.5 182 54.4
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 1.4e-47 196.8 166 63.3
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 5.3e-44 184.9 146 56.8
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 1.2e-43 183.7 655 31.9
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 1.5e-41 176.8 199 50.3
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 4.7e-40 171.8 233 48.1
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 5.7e-38 164.9 664 32.4
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 1.3e-34 153.7 992 26.8
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 8.6e-34 151.0 456 31.4
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 1.1e-33 150.6 284 43.3
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.8e-31 143.3 127 57.5
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.6e-27 130.2 127 52.0
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 3.5e-27 129.0 183 42.1
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.3e-25 122.5 221 36.2
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 2.1e-24 119.8 634 28.1
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 1.8e-23 116.7 121 46.3
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 3.1e-23 115.9 229 34.1
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 8.9e-23 114.4 91 57.1
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 1.7e-21 110.2 198 34.3
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.2e-21 109.8 331 32.9
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 6.4e-21 108.2 92 59.8
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.8e-16 92.8 124 41.9
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 1.8e-15 90.1 68 60.3
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.8e-15 88.2 149 38.3
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 8.9e-15 87.8 111 39.6
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 1.2e-14 87.4 113 53.1
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 4.9e-13 82.0 68 55.9
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.2e-12 77.8 63 55.6
QL04p013873 Quercus lobata HOM05D004493 ORTHO05D005117 1.0e-10 74.3 65 52.3
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.0e-10 72.8 53 62.3
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 6.2e-08 65.1 466 23.6
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.1e-08 64.7 47 59.6
CDE02G0298 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 1.8e-07 63.5 55 52.7


User provided reference genes

Program Settings