Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G206800 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1664.8 950 100.0
Glyma.04G158400 Glycine max HOM05D005717 ORTHO05D007221 0.0e+00 1508.0 955 89.4
VMungo1309G2787 Vigna mungo HOM05D005717 ORTHO05D007221 0.0e+00 1381.3 952 82.2
Phvul.009G204400 Phaseolus vulgaris HOM05D005717 ORTHO05D007221 0.0e+00 1355.9 953 81.0
Ca_26377_v3 Cicer arietinum L. HOM05D005717 ORTHO05D007221 0.0e+00 1270.4 958 76.8
TPR.G15323 Trifolium pratense HOM05D005717 ORTHO05D007221 0.0e+00 1260.4 954 75.5
Medtr2g059200 Medicago truncatula HOM05D005717 ORTHO05D007221 0.0e+00 1240.7 955 74.9
Lj1g0015597 Lotus japonicus HOM05D005717 ORTHO05D007221 0.0e+00 1238.4 953 68.7
arahy.Tifrunner.gnm1.ann1.V6HMAT Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1232.6 956 69.4
arahy.Tifrunner.gnm1.ann1.06HQ5Q Arachis hypogaea HOM05D005717 ORTHO05D007221 0.0e+00 1227.2 956 69.4
Psat1g029000 Pisum sativum HOM05D005717 ORTHO05D007221 0.0e+00 1206.0 953 73.9
Lalb_Chr08g0235411 Lupinus albus HOM05D005717 ORTHO05D007221 0.0e+00 1203.0 947 69.1
QL10p021360 Quercus lobata HOM05D005717 ORTHO05D007221 0.0e+00 1131.3 953 65.3
CiPaw.16G080600 Carya illinoinensis HOM05D005717 ORTHO05D007221 0.0e+00 1079.3 895 70.4
CsaV3_1G003250 Cucumis sativus L. HOM05D005717 ORTHO05D007221 0.0e+00 1078.9 961 61.7
Cfa019855 Carpinus fangiana HOM05D005717 ORTHO05D007221 0.0e+00 1076.2 965 62.2
ClCG06G015370 Citrullus lanatus HOM05D005717 ORTHO05D007221 1.3e-311 1072.8 966 61.7
MELO3C017258.2 Cucumis melo HOM05D005717 ORTHO05D007221 6.0e-311 1070.8 964 61.2
Ciclev10018495m.g Citrus clementina HOM05D005717 ORTHO05D007221 9.5e-309 1063.5 961 62.3
Manes.06G080000 Manihot esculenta HOM05D005717 ORTHO05D007221 7.5e-306 1053.9 952 67.6
Atru.chr9.636 Acer truncatum HOM05D005717 ORTHO05D007221 9.8e-306 1053.5 965 61.1
Potri.012G065200 Populus trichocarpa HOM05D005717 ORTHO05D007221 4.9e-305 1051.2 967 65.1
CANSAT80G2305 Cannabis sativa HOM05D005717 ORTHO05D007221 2.4e-304 1048.9 956 66.7
Thecc.03G110500 Theobroma cacao HOM05D005717 ORTHO05D007221 1.5e-301 1039.6 954 65.3
Haze_18548 Corylus avellana HOM05D005717 ORTHO05D007221 1.9e-301 1039.3 1044 57.1
Duzib205G0984 Durio zibethinus HOM05D005717 ORTHO05D007221 9.5e-301 1036.9 956 64.7
Duzib068G1379 Durio zibethinus HOM05D005717 ORTHO05D007221 2.3e-299 1032.3 954 65.5
GSVIVG01008170001 Vitis vinifera HOM05D005717 ORTHO05D007221 5.2e-299 1031.2 959 57.7
Sed0011544 Sechium edule HOM05D005717 ORTHO05D007221 8.9e-299 1030.4 968 56.7
Sabra12G0046300 Salix brachista HOM05D005717 ORTHO05D007221 7.5e-298 1027.3 971 59.7
MD06G1206600 Malus domestica HOM05D005717 ORTHO05D007221 6.4e-297 1024.2 962 64.7
PGR044G0409 Punica granatum HOM05D005717 ORTHO05D007221 1.7e-294 1016.1 972 63.9
RcHm_v2.0_Chr7g0183891 Rosa chinensis HOM05D005717 ORTHO05D007221 1.9e-293 1012.7 956 63.5
MD14G1217300 Malus domestica HOM05D005717 ORTHO05D007221 4.3e-293 1011.5 964 61.3
MSTRG.9576 Avicennia marina HOM05D005717 ORTHO05D007221 2.8e-292 1008.8 953 59.1
Actinidia24269 Actinidia chinensis HOM05D005717 ORTHO05D007221 4.7e-292 1008.1 964 58.7
Rhsim12G0147200 Rhododendron simsii HOM05D005717 ORTHO05D007221 8.1e-292 1007.3 973 58.1
Lj5A138T57 Lonicera japonica HOM05D005717 ORTHO05D007221 1.4e-291 1006.5 957 60.3
Migut.D01493 Erythranthe guttata HOM05D005717 ORTHO05D007221 4.4e-290 1001.5 884 61.5
Gorai.003G103900 Gossypium raimondii HOM05D005717 ORTHO05D007221 3.8e-289 998.4 988 61.8
Nitab4.5_0002805g0040 Nicotiana tabacum HOM05D005717 ORTHO05D007221 6.4e-289 997.7 893 60.7
CSS0018836 Camellia sinensis var. sinensis HOM05D005717 ORTHO05D007221 1.1e-288 996.9 960 58.5
TAR629G3288 Trochodendron aralioides HOM05D005717 ORTHO05D007221 7.1e-288 994.2 947 64.2
PGSC0003DMG400024615 Solanum tuberosum HOM05D005717 ORTHO05D007221 9.2e-288 993.8 891 66.3
Nn4g23582 Nelumbo nucifera HOM05D005717 ORTHO05D007221 1.2e-287 993.4 958 64.4
Eucgr.K02631 Eucalyptus grandis HOM05D005717 ORTHO05D007221 1.0e-286 990.3 960 63.0
Gohir.A03G072200 Gossypium hirsutum HOM05D005717 ORTHO05D007221 1.0e-286 990.3 961 62.2
HanXRQChr16g0501941 Helianthus annuus HOM05D005717 ORTHO05D007221 1.3e-286 989.9 972 59.1
Cc04_g08130 Coffea canephora HOM05D005717 ORTHO05D007221 5.1e-286 988.0 940 57.9
TWI60G0681 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.5e-285 986.5 955 57.7
Gohir.D03G099000 Gossypium hirsutum HOM05D005717 ORTHO05D007221 5.6e-285 984.6 960 62.9
Sopen03g033760 Solanum pennellii HOM05D005717 ORTHO05D007221 5.6e-285 984.6 975 59.2
Peaxi162Scf00017g03258 Petunia axillaris HOM05D005717 ORTHO05D007221 8.1e-284 980.7 895 60.2
FvH4_5g13280 Fragaria vesca HOM05D005717 ORTHO05D007221 1.4e-283 979.9 964 62.1
Prupe.5G211000 Prunus persica HOM05D005717 ORTHO05D007221 3.1e-283 978.8 969 60.6
FAN08G0926 Fragaria x ananassa HOM05D005717 ORTHO05D007221 8.9e-283 977.2 964 62.2
Nitab4.5_0000646g0340 Nicotiana tabacum HOM05D005717 ORTHO05D007221 1.2e-282 976.9 989 56.4
Sc04g0003990 Simmondsia chinensis HOM05D005717 ORTHO05D007221 1.2e-282 976.9 960 57.3
FAN18G3426 Fragaria x ananassa HOM05D005717 ORTHO05D007221 7.6e-282 974.2 964 61.8
FAN13G2659 Fragaria x ananassa HOM05D005717 ORTHO05D007221 9.9e-282 973.8 956 61.9
Oeu031929.1 Olea europaea HOM05D005717 ORTHO05D007221 1.0e-278 963.8 947 58.5
TWI81G0191 Tripterygium wilfordii HOM05D005717 ORTHO05D007221 1.3e-278 963.4 956 57.0
SalBow1G6140 Salvia bowleyana HOM05D005717 ORTHO05D007221 5.1e-278 961.4 998 56.1
vmacro16471 Vaccinium macrocarpon HOM05D005717 ORTHO05D007221 1.3e-276 956.8 991 55.4
ECA232G0673 Erigeron canadensis HOM05D005717 ORTHO05D007221 3.6e-276 955.3 885 57.3
MBI15_g42003_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.6e-276 955.3 954 60.7
Dinv36820 Davidia involucrata HOM05D005717 ORTHO05D007221 1.1e-275 953.7 955 57.3
Aqoxy3G00578 Aquilegia oxysepala HOM05D005717 ORTHO05D004235 3.4e-274 948.7 957 55.6
DCAR_014013 Daucus carota HOM05D005717 ORTHO05D007221 4.9e-273 944.9 970 60.1
Lsat_1_v5_gn_4_112460 Lactuca sativa HOM05D005717 ORTHO05D007221 2.4e-272 942.6 947 54.1
Hund09972 Selenicereus undatus HOM05D005717 ORTHO05D007221 8.7e-270 934.1 989 54.4
CDE01G0371 Ceratophyllum demersum HOM05D005717 ORTHO05D007221 1.6e-268 929.9 962 55.0
EL10Ac5g11198 Beta vulgaris HOM05D005717 ORTHO05D007221 1.4e-267 926.8 989 53.9
Ah.11g047340 Amaranthus hybridus HOM05D005717 ORTHO05D007221 4.0e-267 925.2 957 54.8
SGA_v2.0_scaffold42G16051 Striga asiatica HOM05D005717 ORTHO05D007221 6.9e-267 924.5 953 54.5
AUR62039684 Chenopodium quinoa HOM05D005717 ORTHO05D007221 3.2e-264 915.6 1003 53.2
AL5G20890 Arabidopsis lyrata HOM05D005717 ORTHO05D007221 1.6e-263 913.3 964 59.0
AUR62032150 Chenopodium quinoa HOM05D005717 ORTHO05D007221 5.1e-262 908.3 988 52.6
Carub.0005s0880 Capsella rubella HOM05D005717 ORTHO05D007221 1.3e-260 903.7 963 53.7
Dinv38628 Davidia involucrata HOM05D005717 ORTHO05D007221 1.4e-259 900.2 911 56.3
Thhalv10016196m.g Eutrema salsugineum HOM05D005717 ORTHO05D007221 1.4e-259 900.2 961 58.6
THA.LOC104804979 Tarenaya hassleriana HOM05D005717 ORTHO05D007221 6.9e-259 897.9 947 60.7
AT3G42660 Arabidopsis thaliana HOM05D005717 ORTHO05D007221 2.5e-253 879.4 965 57.9
CARHR153710 Cardamine hirsuta HOM05D005717 ORTHO05D007221 4.3e-253 878.6 964 57.9
Sp5g17930 Schrenkiella parvula HOM05D005717 ORTHO05D007221 7.4e-253 877.9 956 57.9
SpUn0079_0020 Schrenkiella parvula HOM05D005717 ORTHO05D007221 7.4e-253 877.9 956 57.9
BcaB01g01238 Brassica carinata HOM05D005717 ORTHO05D007221 2.8e-252 875.9 957 58.3
C03p68460 Brassica napus HOM05D005717 ORTHO05D007221 9.0e-251 870.9 959 58.3
A06p22690 Brassica napus HOM05D005717 ORTHO05D007221 4.5e-250 868.6 956 57.7
BolC3t19078H Brassica oleracea HOM05D005717 ORTHO05D007221 4.5e-250 868.6 958 58.0
BraA06t25353Z Brassica rapa HOM05D005717 ORTHO05D007221 4.5e-250 868.6 958 57.8
Aa31LG4G13310 Aethionema arabicum HOM05D005717 ORTHO05D007221 1.3e-249 867.1 885 61.1
BcaC01g02114 Brassica carinata HOM05D005717 ORTHO05D007221 2.2e-249 866.3 958 57.9
Solyc03g114690.4 Solanum lycopersicum HOM05D005717 ORTHO05D007221 7.7e-242 841.3 806 58.8
PSO017G2079 Papaver somniferum HOM05D005717 ORTHO05D007221 1.4e-240 837.0 966 55.9
PSO478G4609 Papaver somniferum HOM05D005717 ORTHO05D007221 2.3e-238 829.7 971 50.7
unitig_578.g15938 Utricularia gibba HOM05D005717 ORTHO05D007221 1.1e-237 827.4 956 50.9
Cpa.g.sc3.215 Carica papaya HOM05D005717 ORTHO05D007221 5.7e-237 825.1 941 50.5
Os09g0241100 Oryza sativa ssp. japonica HOM05D005717 ORTHO05D007221 2.2e-225 786.6 992 48.7
SEGI_19386 Sequoiadendron giganteum HOM05D005717 ORTHO05D007221 1.0e-209 734.6 839 53.2
ATR0691G143 Amborella trichopoda HOM05D005717 ORTHO05D007221 3.6e-207 726.1 825 52.1
Zm00001eb308160 Zea mays HOM05D005717 ORTHO05D007221 2.9e-201 706.4 773 52.4
AagrBONN_evm.TU.Sc2ySwM_344.3979 Anthoceros agrestis HOM05D005717 ORTHO05D007221 2.2e-172 610.5 964 43.0
Mapoly0112s0022 Marchantia polymorpha HOM05D005717 ORTHO05D007221 9.3e-163 578.6 958 44.9
SMO201G0059 Selaginella moellendorffii HOM05D005717 ORTHO05D007221 4.8e-159 566.2 805 51.2
SHI19002 Sapria himalayana HOM05D005717 ORTHO05D007221 3.1e-158 563.5 600 58.3
Pp3c26_14490 Physcomitrium patens HOM05D005717 ORTHO05D007221 3.7e-127 460.3 563 47.2
HPP92_020490 Vanilla planifolia HOM05D005717 ORTHO05D007221 1.8e-121 441.4 504 52.0
CBR_g19153 Chara braunii HOM05D005717 ORTHO05D007221 2.9e-116 424.1 812 36.9
HPP92_020489 Vanilla planifolia HOM05D005717 ORTHO05D007221 9.4e-115 419.1 470 51.9
MCO04G151 Micromonas commoda HOM05D005717 ORTHO05D007221 3.1e-86 324.3 873 30.5
PRCOL_00001230 Prasinoderma coloniale HOM05D005717 ORTHO05D007221 3.8e-84 317.4 867 29.5
SHI19003 Sapria himalayana HOM05D005717 ORTHO05D007221 1.7e-76 292.0 375 50.1
Peaxi162Scf00417g01311 Petunia axillaris HOM05D005717 ORTHO05D007221 6.2e-58 230.3 536 33.6
Cre16.g652950 Chlamydomonas reinhardtii HOM05D005717 ORTHO05D007221 2.4e-57 228.4 874 26.1
Peaxi162Scf00417g01333 Petunia axillaris HOM05D005717 ORTHO05D007221 9.0e-49 199.9 173 59.5
Lsat_1_v5_gn_5_133280 Lactuca sativa HOM05D005717 ORTHO05D007221 7.6e-48 196.8 202 50.0
Lsat_1_v5_gn_4_132261 Lactuca sativa HOM05D005717 ORTHO05D007221 5.6e-43 180.6 203 45.8
Medtr8g432590 Medicago truncatula HOM05D005717 ORTHO05D007221 5.7e-27 127.5 82 74.4
Actinidia04785 Actinidia chinensis HOM05D005717 ORTHO05D007221 2.2e-23 115.5 67 77.6
Medtr2g090685 Medicago truncatula HOM05D005717 ORTHO05D007221 6.7e-20 104.0 66 75.8
C03p68400 Brassica napus HOM05D005717 ORTHO05D007221 3.7e-18 98.2 89 58.4
BolC3t19074H Brassica oleracea HOM05D005717 ORTHO05D007221 4.8e-18 97.8 89 58.4
Lsat_1_v5_gn_4_12100 Lactuca sativa HOM05D005717 ORTHO05D007221 4.1e-17 94.7 96 51.0
BraA06t25356Z Brassica rapa HOM05D005717 ORTHO05D007221 1.9e-14 85.9 100 53.0
A06p22750 Brassica napus HOM05D005717 ORTHO05D007221 3.2e-14 85.1 89 56.2
Actinidia04786 Actinidia chinensis HOM05D005717 ORTHO05D007221 5.7e-11 74.3 185 32.4
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.2e-10 72.4 37 86.5
MBI16_g18971_MAGBIO Magnolia biondii HOM05D005717 ORTHO05D007221 3.1e-09 68.6 151 32.5
Hma1.2p1_0733F.1_g210250 Hydrangea macrophylla HOM05D005717 ORTHO05D007221 2.6e-08 65.5 62 61.3


User provided reference genes

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