Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G180100 Glycine max HOM05D006586 ORTHO05D008254 8.4e-26 119.4 53 100.0
Phvul.009G175900 Phaseolus vulgaris HOM05D006586 ORTHO05D008254 7.1e-17 89.7 49 81.6
COL.COLO4_30118 Corchorus olitorius HOM05D006586 ORTHO05D008254 3.5e-16 87.4 49 75.5
Ca_16153_v3 Cicer arietinum L. HOM05D006586 ORTHO05D008254 4.6e-16 87.0 49 77.6
Glyma.04G185900 Glycine max HOM05D006586 ORTHO05D008254 6.0e-16 86.7 49 77.6
arahy.Tifrunner.gnm1.ann1.BDIM58 Arachis hypogaea HOM05D006586 ORTHO05D008254 1.3e-15 85.5 49 75.5
arahy.Tifrunner.gnm1.ann1.Y9SFAP Arachis hypogaea HOM05D006586 ORTHO05D008254 1.3e-15 85.5 49 75.5
arahy.Tifrunner.gnm1.ann1.1D5X8L Arachis hypogaea HOM05D006586 ORTHO05D008254 1.8e-15 85.1 49 75.5
Psat5g115280 Pisum sativum HOM05D006586 ORTHO05D008254 1.8e-15 85.1 49 77.6
Lj1g0001085 Lotus japonicus HOM05D006586 ORTHO05D008254 2.3e-15 84.7 48 77.1
TPR.G28722 Trifolium pratense HOM05D006586 ORTHO05D008254 5.1e-15 83.6 49 75.5
Medtr3g077420 Medicago truncatula HOM05D006586 ORTHO05D008254 6.7e-15 83.2 49 75.5
VMungo1309G1735 Vigna mungo HOM05D006586 ORTHO05D008254 1.5e-14 82.0 47 74.5
Thecc.03G024500 Theobroma cacao HOM05D006586 ORTHO05D008254 1.9e-14 81.6 48 70.8
Duzib205G0761 Durio zibethinus HOM05D006586 ORTHO05D008254 2.5e-14 81.3 49 69.4
Cfa019173 Carpinus fangiana HOM05D006586 ORTHO05D008254 2.1e-13 78.2 49 69.4
CiPaw.11G023000 Carya illinoinensis HOM05D006586 ORTHO05D008254 2.1e-13 78.2 49 69.4
Haze_07550 Corylus avellana HOM05D006586 ORTHO05D008254 2.1e-13 78.2 49 69.4
ClCG06G017160 Citrullus lanatus HOM05D006586 ORTHO05D008254 3.7e-13 77.4 49 65.3
Lalb_Chr11g0070371 Lupinus albus HOM05D006586 ORTHO05D008254 3.7e-13 77.4 49 73.5
Actinidia19342 Actinidia chinensis HOM05D006586 ORTHO05D008254 1.4e-12 75.5 49 65.3
Manes.14G062950 Manihot esculenta HOM05D006586 ORTHO05D008254 1.4e-12 75.5 49 65.3
Potri.015G080400 Populus trichocarpa HOM05D006586 ORTHO05D008254 1.8e-12 75.1 49 67.3
QL10p008791 Quercus lobata HOM05D006586 ORTHO05D008254 1.8e-12 75.1 49 67.3
AUR62028758 Chenopodium quinoa HOM05D006586 ORTHO05D008254 2.4e-12 74.7 48 66.7
CsaV3_1G001320 Cucumis sativus L. HOM05D006586 ORTHO05D008254 2.4e-12 74.7 49 65.3
PGR083G0458 Punica granatum HOM05D006586 ORTHO05D008254 2.4e-12 74.7 49 65.3
Sed0000603 Sechium edule HOM05D006586 ORTHO05D008254 2.4e-12 74.7 49 65.3
Ciclev10019926m.g Citrus clementina HOM05D006586 ORTHO05D008254 3.1e-12 74.3 49 61.2
Gohir.A12G272800 Gossypium hirsutum HOM05D006586 ORTHO05D008254 4.0e-12 73.9 49 65.3
Sabra15G0104600 Salix brachista HOM05D006586 ORTHO05D008254 5.3e-12 73.6 49 67.3
Rhsim08G0174900 Rhododendron simsii HOM05D006586 ORTHO05D008254 6.9e-12 73.2 49 65.3
vmacro19416 Vaccinium macrocarpon HOM05D006586 ORTHO05D008254 6.9e-12 73.2 49 63.3
GSVIVG01007692001 Vitis vinifera HOM05D006586 ORTHO05D008254 6.9e-12 73.2 49 65.3
Gohir.D12G273500 Gossypium hirsutum HOM05D006586 ORTHO05D008254 9.0e-12 72.8 49 63.3
Sc10g0010150 Simmondsia chinensis HOM05D006586 ORTHO05D008254 9.0e-12 72.8 49 63.3
SGA_v2.0_scaffold25G10812 Striga asiatica HOM05D006586 ORTHO05D008254 9.0e-12 72.8 49 63.3
Atru.chr9.2534_Atru.chr9.2535 Acer truncatum HOM05D006586 ORTHO05D008254 1.2e-11 72.4 49 63.3
CSS0037952 Camellia sinensis var. sinensis HOM05D006586 ORTHO05D008254 1.2e-11 72.4 49 63.3
Peaxi162Scf00089g01633 Petunia axillaris HOM05D006586 ORTHO05D008254 1.2e-11 72.4 49 63.3
FvH4_5g05750 Fragaria vesca HOM05D006586 ORTHO05D008254 1.5e-11 72.0 49 61.2
CDE04G2890 Ceratophyllum demersum HOM05D006586 ORTHO05D008254 2.0e-11 71.6 49 65.3
Eucgr.B00243 Eucalyptus grandis HOM05D006586 ORTHO05D008254 2.0e-11 71.6 49 63.3
MD14G1175900 Malus domestica HOM05D006586 ORTHO05D008254 2.0e-11 71.6 49 61.2
RcHm_v2.0_Chr7g0193061 Rosa chinensis HOM05D006586 ORTHO05D008254 2.0e-11 71.6 48 62.5
AT5G63080 Arabidopsis thaliana HOM05D006586 ORTHO05D008254 2.6e-11 71.2 49 61.2
EL10Ac5g10701 Beta vulgaris HOM05D006586 ORTHO05D008254 2.6e-11 71.2 48 64.6
Migut.O00130 Erythranthe guttata HOM05D006586 ORTHO05D008254 2.6e-11 71.2 49 61.2
Nitab4.5_0001284g0040 Nicotiana tabacum HOM05D006586 ORTHO05D008254 3.4e-11 70.9 48 62.5
Thhalv10004134m.g Eutrema salsugineum HOM05D006586 ORTHO05D008254 4.5e-11 70.5 49 61.2
Nitab4.5_0006452g0010 Nicotiana tabacum HOM05D006586 ORTHO05D008254 4.5e-11 70.5 49 61.2
SalBow5G1232 Salvia bowleyana HOM05D006586 ORTHO05D008254 4.5e-11 70.5 49 59.2
Sp2g26210 Schrenkiella parvula HOM05D006586 ORTHO05D008254 4.5e-11 70.5 49 63.3
CAN.G1166.29 Capsicum annuum HOM05D006586 ORTHO05D008254 5.8e-11 70.1 48 62.5
Lsat_1_v5_gn_4_75921 Lactuca sativa HOM05D006586 ORTHO05D008254 5.8e-11 70.1 49 57.1
Prupe.5G169900 Prunus persica HOM05D006586 ORTHO05D008254 5.8e-11 70.1 49 59.2
PGSC0003DMG400018168 Solanum tuberosum HOM05D006586 ORTHO05D008254 5.8e-11 70.1 48 62.5
THA.LOC104821484 Tarenaya hassleriana HOM05D006586 ORTHO05D008254 5.8e-11 70.1 49 59.2
FAN18G2086 Fragaria x ananassa HOM05D006586 ORTHO05D008254 7.6e-11 69.7 49 59.2
Cc04_g12530 Coffea canephora HOM05D006586 ORTHO05D008254 9.9e-11 69.3 49 59.2
Lj9C445T6 Lonicera japonica HOM05D006586 ORTHO05D008254 9.9e-11 69.3 49 61.2
Aqoxy3G02831 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 1.3e-10 68.9 49 59.2
Gorai.008G293900 Gossypium raimondii HOM05D006586 ORTHO05D008254 1.3e-10 68.9 51 62.7
HanXRQChr11g0348321 Helianthus annuus HOM05D006586 ORTHO05D008254 1.3e-10 68.9 49 55.1
Oeu036011.1 Olea europaea HOM05D006586 ORTHO05D008254 1.3e-10 68.9 49 61.2
SalBow5G1744 Salvia bowleyana HOM05D006586 ORTHO05D008254 1.3e-10 68.9 49 57.1
TAR371G0860 Trochodendron aralioides HOM05D006586 ORTHO05D008254 1.3e-10 68.9 49 61.2
Ah.02g110650 Amaranthus hybridus HOM05D006586 ORTHO05D008254 1.7e-10 68.6 48 62.5
Aqoxy1G03747 Aquilegia oxysepala HOM05D006586 ORTHO05D008254 1.7e-10 68.6 49 59.2
MSTRG.23151 Avicennia marina HOM05D006586 ORTHO05D008254 2.2e-10 68.2 49 61.2
BcaB04g19943 Brassica carinata HOM05D006586 ORTHO05D008254 2.2e-10 68.2 49 57.1
BcaC04g23364 Brassica carinata HOM05D006586 ORTHO05D008254 3.8e-10 67.4 49 59.2
A09p08080 Brassica napus HOM05D006586 ORTHO05D008254 3.8e-10 67.4 49 59.2
C09p09140 Brassica napus HOM05D006586 ORTHO05D008254 3.8e-10 67.4 49 59.2
BolC9t53826H Brassica oleracea HOM05D006586 ORTHO05D008254 3.8e-10 67.4 49 59.2
BraA09t36459Z Brassica rapa HOM05D006586 ORTHO05D008254 3.8e-10 67.4 49 59.2
Nn4g22672 Nelumbo nucifera HOM05D006586 ORTHO05D008254 3.8e-10 67.4 49 61.2
Hund09455 Selenicereus undatus HOM05D006586 ORTHO05D008254 3.8e-10 67.4 48 58.3
Zm00001eb342240 Zea mays HOM05D006586 ORTHO05D008254 3.8e-10 67.4 50 64.0
PSO832G2003 Papaver somniferum HOM05D006586 ORTHO05D008254 4.9e-10 67.0 48 60.4
SHI17138 Sapria himalayana HOM05D006586 ORTHO05D008254 4.9e-10 67.0 51 56.9
Solyc03g112600.4 Solanum lycopersicum HOM05D006586 ORTHO05D008254 4.9e-10 67.0 48 58.3
Sopen03g031690 Solanum pennellii HOM05D006586 ORTHO05D008254 4.9e-10 67.0 48 58.3
AL8G40110 Arabidopsis lyrata HOM05D006586 ORTHO05D008254 6.4e-10 66.6 49 57.1
DCAR_016036 Daucus carota HOM05D006586 ORTHO05D008254 6.4e-10 66.6 50 58.0
SEGI_41391 Sequoiadendron giganteum HOM05D006586 ORTHO05D008254 1.1e-09 65.9 50 60.0
ECA232G2495 Erigeron canadensis HOM05D006586 ORTHO05D000001 1.4e-09 65.5 49 55.1
Os01g0546900 Oryza sativa ssp. japonica HOM05D006586 ORTHO05D008254 1.4e-09 65.5 50 62.0
PSO063G4773 Papaver somniferum HOM05D006586 ORTHO05D008254 1.9e-09 65.1 48 58.3
ATR1152G085 Amborella trichopoda HOM05D006586 ORTHO05D008254 9.3e-09 62.8 49 55.1
SMO141G0010 Selaginella moellendorffii HOM05D006586 ORTHO05D008254 9.3e-09 62.8 46 54.3
Mapoly0108s0029 Marchantia polymorpha HOM05D006586 ORTHO05D008254 7.9e-08 59.7 55 49.1
Carub.0008s2381 Capsella rubella HOM05D006586 ORTHO05D008254 5.6e-06 53.5 81 37.0
CBR_g49886 Chara braunii HOM05D006586 ORTHO05D008254 7.4e-06 53.1 39 59.0


User provided reference genes

Program Settings