Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G176300 Glycine max HOM05D003836 ORTHO05D004556 0.0e+00 1159.8 600 100.0
Glyma.04G189300 Glycine max HOM05D003836 ORTHO05D004556 4.1e-312 1074.3 603 94.0
Phvul.009G172600 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 3.2e-291 1004.6 600 86.3
VMungo1309G0617 Vigna mungo HOM05D003836 ORTHO05D004556 8.8e-281 969.9 600 84.3
Ca_16122_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 4.4e-256 887.9 640 74.4
Lj1g0024673 Lotus japonicus HOM05D003836 ORTHO05D004556 9.8e-256 886.7 617 78.0
TPR.G35600 Trifolium pratense HOM05D003836 ORTHO05D004556 5.4e-254 880.9 642 74.6
Medtr3g076570 Medicago truncatula HOM05D003836 ORTHO05D004556 1.5e-240 836.3 627 72.6
Lalb_Chr11g0070001 Lupinus albus HOM05D003836 ORTHO05D004556 3.5e-237 825.1 651 70.8
arahy.Tifrunner.gnm1.ann1.FHB42U Arachis hypogaea HOM05D003836 ORTHO05D004556 5.2e-233 811.2 662 69.3
arahy.Tifrunner.gnm1.ann1.THT645 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.8e-233 810.8 581 74.5
arahy.Tifrunner.gnm1.ann1.HCE13Z Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-227 792.3 642 68.1
Psat5g116920 Pisum sativum HOM05D003836 ORTHO05D004556 1.1e-225 786.9 597 74.2
Cfa015051 Carpinus fangiana HOM05D003836 ORTHO05D004556 9.3e-222 773.9 523 77.6
CiPaw.05G187900 Carya illinoinensis HOM05D003836 ORTHO05D004556 1.1e-219 766.9 654 65.3
GSVIVG01011621001 Vitis vinifera HOM05D003836 ORTHO05D004556 1.8e-212 743.0 555 70.3
FvH4_4g33240 Fragaria vesca HOM05D003836 ORTHO05D004556 6.7e-212 741.1 624 64.6
Ciclev10014689m.g Citrus clementina HOM05D003836 ORTHO05D004556 4.8e-210 734.9 622 65.8
TAR374G0617 Trochodendron aralioides HOM05D003836 ORTHO05D004556 3.1e-209 732.3 640 63.1
Prupe.1G335900 Prunus persica HOM05D003836 ORTHO05D004556 6.4e-207 724.5 623 65.7
FAN22G0514 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.1e-206 723.8 616 63.6
FAN17G2261 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.7e-205 719.2 624 63.0
Gohir.A13G027900 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.7e-205 719.2 485 75.1
Manes.15G136900 Manihot esculenta HOM05D003836 ORTHO05D004556 6.0e-205 718.0 625 62.6
FAN07G2679 Fragaria x ananassa HOM05D003836 ORTHO05D004556 1.8e-204 716.5 618 62.9
Gorai.013G030000 Gossypium raimondii HOM05D003836 ORTHO05D004556 3.0e-204 715.7 485 74.2
RcHm_v2.0_Chr4g0442391 Rosa chinensis HOM05D003836 ORTHO05D004556 5.1e-204 714.9 620 63.5
CANSAT78G2203 Cannabis sativa HOM05D003836 ORTHO05D004556 1.5e-203 713.4 487 74.7
Manes.17G086000 Manihot esculenta HOM05D003836 ORTHO05D004556 1.5e-203 713.4 629 63.9
FAN12G1258 Fragaria x ananassa HOM05D003836 ORTHO05D004556 2.5e-203 712.6 624 62.3
MD16G1015700 Malus domestica HOM05D003836 ORTHO05D004556 7.4e-203 711.1 622 63.7
Atru.chr7.2694 Acer truncatum HOM05D003836 ORTHO05D004556 3.7e-202 708.8 480 75.0
Haze_10840 Corylus avellana HOM05D003836 ORTHO05D004556 3.7e-202 708.8 651 62.4
TWI74G0623 Tripterygium wilfordii HOM05D003836 ORTHO05D004556 4.0e-201 705.3 643 61.9
Gorai.008G170400 Gossypium raimondii HOM05D003836 ORTHO05D004556 6.9e-201 704.5 636 61.3
QL03p038287 Quercus lobata HOM05D003836 ORTHO05D004556 9.0e-201 704.1 703 58.0
TAR622G1236 Trochodendron aralioides HOM05D003836 ORTHO05D004556 2.6e-200 702.6 640 60.9
Potri.010G103400 Populus trichocarpa HOM05D003836 ORTHO05D004556 1.3e-199 700.3 616 63.1
CsaV3_7G022080 Cucumis sativus L. HOM05D003836 ORTHO05D004556 4.2e-198 695.3 483 73.9
Gohir.D13G026700 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.1e-197 693.0 487 73.1
Nn4g24475 Nelumbo nucifera HOM05D003836 ORTHO05D004556 7.9e-197 691.0 554 67.0
Migut.E00502 Erythranthe guttata HOM05D003836 ORTHO05D004556 8.7e-196 687.6 622 60.3
Aqoxy6G01037 Aquilegia oxysepala HOM05D003836 ORTHO05D004556 6.3e-194 681.4 546 66.5
Nn3g18432 Nelumbo nucifera HOM05D003836 ORTHO05D004556 1.1e-193 680.6 641 58.0
PSO063G7099 Papaver somniferum HOM05D003836 ORTHO05D004556 1.8e-193 679.9 624 60.7
Sed0017171 Sechium edule HOM05D003836 ORTHO05D004556 1.8e-193 679.9 519 69.4
PGR142G3191 Punica granatum HOM05D003836 ORTHO05D004556 2.6e-192 676.0 634 61.4
Eucgr.G02079 Eucalyptus grandis HOM05D003836 ORTHO05D004556 5.9e-192 674.9 544 66.7
Dinv32673 Davidia involucrata HOM05D003836 ORTHO05D004556 7.7e-192 674.5 641 59.0
ClCG11G007570 Citrullus lanatus HOM05D003836 ORTHO05D004556 1.0e-191 674.1 483 72.7
Dinv02294 Davidia involucrata HOM05D003836 ORTHO05D004556 1.0e-191 674.1 430 79.1
PSO782G5172 Papaver somniferum HOM05D003836 ORTHO05D004556 2.2e-191 672.9 482 70.5
Glyma.07G191900 Glycine max HOM05D003836 ORTHO05D004556 1.4e-190 670.2 506 71.9
Hma1.2p1_2859F.1_g329510 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.0e-188 664.1 402 81.1
Thecc.02G307000 Theobroma cacao HOM05D003836 ORTHO05D004556 4.8e-186 655.2 636 59.6
arahy.Tifrunner.gnm1.ann1.36Q8NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.4e-185 653.7 642 60.7
Atru.chr11.806 Acer truncatum HOM05D003836 ORTHO05D004556 4.5e-184 648.7 396 80.8
Duzib251G0897 Durio zibethinus HOM05D003836 ORTHO05D004556 2.9e-183 646.0 529 66.0
Sabra10G0076000 Salix brachista HOM05D003836 ORTHO05D004556 1.2e-181 640.6 637 57.9
Lsat_1_v5_gn_3_104360 Lactuca sativa HOM05D003836 ORTHO05D004556 2.1e-181 639.8 637 58.1
Sp5g22940 Schrenkiella parvula HOM05D003836 ORTHO05D004556 3.6e-181 639.0 659 55.7
CARHR060610 Cardamine hirsuta HOM05D003836 ORTHO05D004556 3.9e-180 635.6 655 55.7
MELO3C013236.2 Cucumis melo HOM05D003836 ORTHO05D004556 5.7e-179 631.7 462 71.0
AT1G67960 Arabidopsis thaliana HOM05D003836 ORTHO05D004556 1.3e-178 630.6 501 64.5
Cc11_g06410 Coffea canephora HOM05D003836 ORTHO05D004556 1.7e-178 630.2 657 55.1
AL2G26960 Arabidopsis lyrata HOM05D003836 ORTHO05D004556 2.2e-178 629.8 501 64.5
Carub.0002s1445 Capsella rubella HOM05D003836 ORTHO05D004556 3.7e-178 629.0 644 55.0
Duzib268G0198 Durio zibethinus HOM05D003836 ORTHO05D004556 6.3e-178 628.2 646 57.6
ECA246G1487 Erigeron canadensis HOM05D003836 ORTHO05D004556 1.2e-176 624.0 468 69.7
Glyma.13G184600 Glycine max HOM05D003836 ORTHO05D004556 8.0e-173 611.3 483 70.0
Gohir.A12G154400 Gossypium hirsutum HOM05D003836 ORTHO05D004556 2.3e-172 609.8 573 60.6
Thhalv10018303m.g Eutrema salsugineum HOM05D003836 ORTHO05D004556 2.0e-171 606.7 640 54.7
Gohir.D12G157600 Gossypium hirsutum HOM05D003836 ORTHO05D004556 9.7e-171 604.4 573 59.7
COL.COLO4_27608 Corchorus olitorius HOM05D003836 ORTHO05D004556 7.0e-169 598.2 574 60.5
A07p34480 Brassica napus HOM05D003836 ORTHO05D004556 2.6e-168 596.3 598 56.5
TPR.G32436 Trifolium pratense HOM05D003836 ORTHO05D004556 1.3e-167 594.0 474 65.8
DCAR_023556 Daucus carota HOM05D003836 ORTHO05D004556 8.5e-167 591.3 617 54.5
Ah.02g131240 Amaranthus hybridus HOM05D003836 ORTHO05D004556 2.1e-165 586.6 414 70.8
SalBow2G2298 Salvia bowleyana HOM05D003836 ORTHO05D004556 2.1e-165 586.6 643 54.3
EL10Ac8g19453 Beta vulgaris HOM05D003836 ORTHO05D004556 3.0e-164 582.8 671 52.9
Cpa.g.sc2.157 Carica papaya HOM05D003836 ORTHO05D004556 1.2e-163 580.9 431 71.0
ATR0021G013 Amborella trichopoda HOM05D003836 ORTHO05D004556 1.3e-162 577.4 543 58.0
Aa31sc536G20 Aethionema arabicum HOM05D003836 ORTHO05D004556 1.7e-162 577.0 527 58.4
VMungo0251G2034 Vigna mungo HOM05D003836 ORTHO05D004556 5.0e-159 565.5 489 64.8
Zm00001eb216180 Zea mays HOM05D003836 ORTHO05D004556 6.5e-159 565.1 608 52.5
Psat7g111040 Pisum sativum HOM05D003836 ORTHO05D004556 3.2e-158 562.8 364 77.7
BcaB03g15387 Brassica carinata HOM05D003836 ORTHO05D004556 5.4e-153 545.4 488 58.8
SGA_v2.0_scaffold23G10153 Striga asiatica HOM05D003836 ORTHO05D004556 1.0e-151 541.2 500 61.0
Phvul.002G223900 Phaseolus vulgaris HOM05D003836 ORTHO05D004556 1.5e-150 537.3 487 63.2
arahy.Tifrunner.gnm1.ann1.6NWB5V Arachis hypogaea HOM05D003836 ORTHO05D004556 4.5e-144 515.8 492 59.1
Medtr4g090465 Medicago truncatula HOM05D003836 ORTHO05D004556 1.7e-143 513.8 412 66.7
unitig_8.g4015 Utricularia gibba HOM05D003836 ORTHO05D004556 6.6e-143 511.9 486 58.6
Lalb_Chr23g0273371 Lupinus albus HOM05D003836 ORTHO05D004556 3.6e-141 506.1 481 63.2
Lj6A734G74 Lonicera japonica HOM05D003836 ORTHO05D004556 3.1e-140 503.1 442 62.0
BcaC08g46221 Brassica carinata HOM05D003836 ORTHO05D004556 1.6e-136 490.7 499 53.3
BolC6t39223H Brassica oleracea HOM05D003836 ORTHO05D004556 8.6e-135 485.0 455 56.5
Os03g0715400 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 1.7e-130 470.7 422 60.4
Pp3c12_1050 Physcomitrium patens HOM05D003836 ORTHO05D004556 1.0e-127 461.5 438 54.3
Solyc06g051440.4 Solanum lycopersicum HOM05D003836 ORTHO05D004556 8.1e-125 451.8 285 79.3
Mapoly0019s0007 Marchantia polymorpha HOM05D003836 ORTHO05D004556 6.0e-120 435.6 492 48.4
Nitab4.5_0001516g0010 Nicotiana tabacum HOM05D003836 ORTHO05D004556 8.6e-119 431.8 756 38.9
arahy.Tifrunner.gnm1.ann1.0AB4R7 Arachis hypogaea HOM05D003836 ORTHO05D004556 4.4e-115 419.5 492 53.3
SHI04351 Sapria himalayana HOM05D003836 ORTHO05D004556 1.7e-114 417.5 354 62.7
BcaB03g15147 Brassica carinata HOM05D003836 ORTHO05D004556 3.0e-111 406.8 585 43.4
C06p42030 Brassica napus HOM05D003836 ORTHO05D004556 4.8e-109 399.4 460 48.7
Oeu036124.4 Olea europaea HOM05D003836 ORTHO05D004556 4.4e-107 392.9 291 70.8
AUR62033051 Chenopodium quinoa HOM05D003836 ORTHO05D004556 8.4e-106 388.7 551 48.8
MD13G1017500 Malus domestica HOM05D003836 ORTHO05D004556 1.2e-96 358.2 279 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1822 Anthoceros agrestis HOM05D003836 ORTHO05D004556 3.5e-88 330.1 339 51.0
Sopen06g017410 Solanum pennellii HOM05D003836 ORTHO05D004556 1.0e-87 328.6 413 49.2
HanXRQChr15g0473551 Helianthus annuus HOM05D003836 ORTHO05D004556 1.9e-86 324.3 211 75.4
SMO358G0292 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.4e-84 318.2 521 40.3
Peaxi162Scf00825g00424 Petunia axillaris HOM05D003836 ORTHO05D004556 3.1e-84 317.0 407 49.1
Sc10g0004880 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.5e-83 314.7 192 81.2
MBI11_g36366_MAGBIO Magnolia biondii HOM05D003836 ORTHO05D004556 6.5e-82 309.3 393 47.3
Nitab4.5_0001227g0030 Nicotiana tabacum HOM05D003836 ORTHO05D004556 2.1e-80 304.3 625 36.3
Lalb_Chr23g0273381 Lupinus albus HOM05D003836 ORTHO05D004556 6.1e-80 302.8 171 87.7
Sc10g0004870 Simmondsia chinensis HOM05D003836 ORTHO05D004556 1.0e-79 302.0 266 60.5
CSS0006660 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 2.0e-70 271.2 161 83.2
AUR62042201 Chenopodium quinoa HOM05D003836 ORTHO05D004556 3.7e-69 266.9 563 38.7
Peaxi162Scf00825g00423 Petunia axillaris HOM05D003836 ORTHO05D004556 1.7e-66 258.1 160 78.1
DCAR_030293 Daucus carota HOM05D003836 ORTHO05D004556 4.2e-65 253.4 347 42.9
Hma1.2p1_1450F.1_g284160 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 2.3e-63 247.7 327 49.8
HanXRQChr15g0473541 Helianthus annuus HOM05D003836 ORTHO05D004556 8.8e-63 245.7 161 72.0
BcaC08g46015 Brassica carinata HOM05D003836 ORTHO05D004556 2.0e-62 244.6 188 68.6
C01p04020 Brassica napus HOM05D003836 ORTHO05D004556 9.4e-57 225.7 172 62.8
MD13G1017700 Malus domestica HOM05D003836 ORTHO05D004556 7.4e-54 216.1 124 83.1
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 9.1e-52 209.1 126 78.6
arahy.Tifrunner.gnm1.ann1.I9RBIQ Arachis hypogaea HOM05D003836 ORTHO05D004556 2.3e-47 194.5 178 62.9
Nn8g39028 Nelumbo nucifera HOM05D003836 ORTHO05D004556 8.8e-47 192.6 142 69.7
MCO03G489 Micromonas commoda HOM05D003836 ORTHO05D004556 1.4e-44 185.3 384 33.1
PRCOL_00001721 Prasinoderma coloniale HOM05D003836 ORTHO05D004556 9.1e-44 182.6 415 33.0
Ca_18504_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 1.0e-42 179.1 165 64.2
Hma1.2p1_0658F.1_g197210 Hydrangea macrophylla HOM05D003836 ORTHO05D004556 1.7e-42 178.3 217 53.0
Nn6g35150 Nelumbo nucifera HOM05D003836 ORTHO05D004556 8.5e-42 176.0 119 74.8
Gohir.D13G133800 Gossypium hirsutum HOM05D003836 ORTHO05D004556 1.1e-41 175.6 126 68.3
Nn6g35439 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.6e-40 170.6 130 70.0
HPP92_020596 Vanilla planifolia HOM05D003836 ORTHO05D004556 1.7e-37 161.8 291 39.9
CAN.G2032.2 Capsicum annuum HOM05D003836 ORTHO05D004556 1.4e-36 158.7 148 57.4
arahy.Tifrunner.gnm1.ann1.MA62LX Arachis hypogaea HOM05D003836 ORTHO05D004556 3.8e-34 150.6 87 85.1
arahy.Tifrunner.gnm1.ann1.X5KGN6 Arachis hypogaea HOM05D003836 ORTHO05D004556 2.5e-33 147.9 232 50.4
C06p38100 Brassica napus HOM05D003836 ORTHO05D004556 1.8e-31 141.7 239 37.7
BolC6t38907H Brassica oleracea HOM05D003836 ORTHO05D004556 1.8e-31 141.7 239 37.7
Cre02.g091000 Chlamydomonas reinhardtii HOM05D003836 ORTHO05D004556 6.3e-29 133.3 498 23.9
arahy.Tifrunner.gnm1.ann1.ANFG2H Arachis hypogaea HOM05D003836 ORTHO05D004556 3.2e-28 131.0 92 71.7
Hund15725 Selenicereus undatus HOM05D003836 ORTHO05D004556 1.7e-26 125.2 128 53.9
Cpa.g.sc2.159 Carica papaya HOM05D003836 ORTHO05D004556 1.5e-25 122.1 69 82.6
arahy.Tifrunner.gnm1.ann1.2AK3X2 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-25 121.7 92 67.4
arahy.Tifrunner.gnm1.ann1.62N7D7 Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-25 121.7 92 67.4
arahy.Tifrunner.gnm1.ann1.6IM5NS Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-25 121.7 92 67.4
arahy.Tifrunner.gnm1.ann1.QY8RSF Arachis hypogaea HOM05D003836 ORTHO05D004556 1.9e-25 121.7 92 67.4
arahy.Tifrunner.gnm1.ann1.1LH17Q Arachis hypogaea HOM05D003836 ORTHO05D004556 2.8e-24 117.9 84 71.4
arahy.Tifrunner.gnm1.ann1.XXVP91 Arachis hypogaea HOM05D003836 ORTHO05D004556 6.1e-24 116.7 86 68.6
RcHm_v2.0_Chr2g0114371 Rosa chinensis HOM05D003836 ORTHO05D004556 1.5e-22 112.1 68 83.8
TPR.G24606 Trifolium pratense HOM05D003836 ORTHO05D004556 2.0e-22 111.7 69 72.5
Cfa025144 Carpinus fangiana HOM05D003836 ORTHO05D004556 6.4e-21 106.7 274 33.6
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 2.0e-19 101.7 82 64.6
Oeu043972.2 Olea europaea HOM05D003836 ORTHO05D004556 4.6e-19 100.5 131 49.6
SEGI_35804 Sequoiadendron giganteum HOM05D003836 ORTHO05D004556 4.3e-17 94.0 179 36.9
Gorai.010G152700 Gossypium raimondii HOM05D003836 ORTHO05D004556 1.1e-15 89.4 54 77.8
Ca_18505_v3 Cicer arietinum L. HOM05D003836 ORTHO05D004556 2.0e-14 85.1 70 60.0
SHI04354 Sapria himalayana HOM05D003836 ORTHO05D004556 3.4e-14 84.3 61 65.6
SMO278G0031 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 2.9e-13 81.3 147 39.5
Nn6g35438 Nelumbo nucifera HOM05D003836 ORTHO05D004556 3.2e-12 77.8 51 78.4
arahy.Tifrunner.gnm1.ann1.UYUS3H Arachis hypogaea HOM05D003836 ORTHO05D019773 3.5e-11 74.3 53 75.5
CSS0003774 Camellia sinensis var. sinensis HOM05D003836 ORTHO05D004556 1.3e-10 72.4 207 32.9
SMO200G0209 Selaginella moellendorffii HOM05D003836 ORTHO05D004556 1.7e-10 72.0 81 48.1
arahy.Tifrunner.gnm1.ann1.45U5GW Arachis hypogaea HOM05D003836 ORTHO05D011406 1.1e-09 69.3 52 71.2
Zm00001eb237940 Zea mays HOM05D003836 ORTHO05D004556 2.5e-09 68.2 46 60.9
Zm00001eb410650 Zea mays HOM05D003836 ORTHO05D004556 2.5e-09 68.2 46 60.9
arahy.Tifrunner.gnm1.ann1.35E9MG Arachis hypogaea HOM05D003836 ORTHO05D004556 5.6e-09 67.0 48 68.8
Zm00001eb175210 Zea mays HOM05D003836 ORTHO05D004556 7.3e-09 66.6 46 58.7
RcHm_v2.0_Chr6g0287871 Rosa chinensis HOM05D003836 ORTHO05D004556 9.5e-09 66.2 40 80.0
arahy.Tifrunner.gnm1.ann1.70DEUR Arachis hypogaea HOM05D000602 ORTHO05D004556 6.8e-07 60.1 36 75.0
arahy.Tifrunner.gnm1.ann1.JZ224H Arachis hypogaea HOM05D022818 ORTHO05D000304 6.8e-07 60.1 52 63.5
Os03g0715332 Oryza sativa ssp. japonica HOM05D003836 ORTHO05D004556 8.9e-07 59.7 52 53.8
RcHm_v2.0_Chr4g0390701 Rosa chinensis HOM05D003836 ORTHO05D004556 2.6e-06 58.2 39 71.8


User provided reference genes

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