Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G164400 Glycine max HOM05D007048 ORTHO05D008811 9.2e-63 243.4 127 100.0
Glyma.04G201000 Glycine max HOM05D007048 ORTHO05D008811 3.4e-57 224.9 127 92.1
Phvul.009G161500 Phaseolus vulgaris HOM05D007048 ORTHO05D008811 3.1e-50 201.8 123 84.6
VMungo1309G1627 Vigna mungo HOM05D007048 ORTHO05D008811 9.0e-50 200.3 123 83.7
Medtr3g098660 Medicago truncatula HOM05D007048 ORTHO05D008811 5.3e-42 174.5 121 73.6
TPR.G21584 Trifolium pratense HOM05D007048 ORTHO05D008811 2.6e-41 172.2 120 75.0
Lj1g0016164 Lotus japonicus HOM05D007048 ORTHO05D008811 4.5e-41 171.4 120 72.5
arahy.Tifrunner.gnm1.ann1.QNIR3T Arachis hypogaea HOM05D007048 ORTHO05D008811 4.9e-40 167.9 115 73.9
Lalb_Chr08g0237541 Lupinus albus HOM05D007048 ORTHO05D008811 2.1e-38 162.5 126 68.3
Psat5g055240 Pisum sativum HOM05D007048 ORTHO05D008811 2.1e-38 162.5 113 73.5
arahy.Tifrunner.gnm1.ann1.8FCI62 Arachis hypogaea HOM05D007048 ORTHO05D008811 4.6e-38 161.4 114 71.9
arahy.Tifrunner.gnm1.ann1.CS080T Arachis hypogaea HOM05D007048 ORTHO05D008811 2.5e-36 155.6 113 70.8
Haze_07101 Corylus avellana HOM05D007048 ORTHO05D008811 7.4e-36 154.1 123 65.0
Cfa018710 Carpinus fangiana HOM05D007048 ORTHO05D008811 2.1e-35 152.5 114 68.4
arahy.Tifrunner.gnm1.ann1.DD5QTF Arachis hypogaea HOM05D007048 ORTHO05D008811 4.8e-35 151.4 113 68.1
Actinidia18303 Actinidia chinensis HOM05D007048 ORTHO05D008811 1.4e-34 149.8 116 65.5
Manes.14G045100 Manihot esculenta HOM05D007048 ORTHO05D008811 3.1e-34 148.7 121 63.6
Prupe.5G142300 Prunus persica HOM05D007048 ORTHO05D008811 4.0e-34 148.3 115 65.2
Duzib068G0404 Durio zibethinus HOM05D007048 ORTHO05D008811 6.9e-34 147.5 132 60.6
Migut.D01184 Erythranthe guttata HOM05D007048 ORTHO05D008811 6.9e-34 147.5 124 60.5
Thecc.03G140000 Theobroma cacao HOM05D007048 ORTHO05D008811 1.2e-33 146.7 117 65.0
CANSAT56G3502 Cannabis sativa HOM05D007048 ORTHO05D008811 2.6e-33 145.6 113 67.3
CANSAT56G3230 Cannabis sativa HOM05D007048 ORTHO05D008811 3.4e-33 145.2 113 67.3
TWI39G0039 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 4.5e-33 144.8 119 61.3
Dinv23221 Davidia involucrata HOM05D007048 ORTHO05D008811 5.8e-33 144.4 123 61.0
RcHm_v2.0_Chr7g0188741 Rosa chinensis HOM05D007048 ORTHO05D008811 7.6e-33 144.1 113 61.9
Atru.chr6.1912 Acer truncatum HOM05D007048 ORTHO05D008811 1.3e-32 143.3 121 60.3
SalBow1G8421 Salvia bowleyana HOM05D007048 ORTHO05D008811 1.3e-32 143.3 123 58.5
Cc04_g05890 Coffea canephora HOM05D007048 ORTHO05D008811 1.7e-32 142.9 125 58.4
Rhsim08G0196900 Rhododendron simsii HOM05D007048 ORTHO05D008811 3.8e-32 141.7 115 63.5
Sabra15G0126100 Salix brachista HOM05D007048 ORTHO05D008811 4.9e-32 141.4 115 60.0
CARHR257290 Cardamine hirsuta HOM05D007048 ORTHO05D008811 6.4e-32 141.0 117 61.5
Potri.015G105900 Populus trichocarpa HOM05D007048 ORTHO05D008811 8.4e-32 140.6 127 57.5
CiPaw.11G000300 Carya illinoinensis HOM05D007048 ORTHO05D008811 1.1e-31 140.2 127 59.8
Cpa.g.sc13.165 Carica papaya HOM05D007048 ORTHO05D008811 1.9e-31 139.4 118 60.2
CsaV3_1G009910 Cucumis sativus L. HOM05D007048 ORTHO05D008811 1.9e-31 139.4 113 61.9
Gohir.D07G051200 Gossypium hirsutum HOM05D007048 ORTHO05D008811 1.9e-31 139.4 120 60.8
Gorai.001G054300 Gossypium raimondii HOM05D007048 ORTHO05D008811 1.9e-31 139.4 120 60.8
EL10Ac5g11295 Beta vulgaris HOM05D007048 ORTHO05D008811 2.4e-31 139.0 111 64.9
MELO3C035737.2 Cucumis melo HOM05D007048 ORTHO05D008811 2.4e-31 139.0 113 61.9
MD06G1131300 Malus domestica HOM05D007048 ORTHO05D008811 2.4e-31 139.0 115 61.7
TWI14G0368 Tripterygium wilfordii HOM05D007048 ORTHO05D008811 2.4e-31 139.0 112 60.7
A03p16450 Brassica napus HOM05D007048 ORTHO05D008811 3.2e-31 138.7 118 62.7
BraA03t10934Z Brassica rapa HOM05D007048 ORTHO05D008811 3.2e-31 138.7 118 62.7
Gohir.A07G046900 Gossypium hirsutum HOM05D007048 ORTHO05D008811 4.2e-31 138.3 120 60.0
Ah.02g114610 Amaranthus hybridus HOM05D007048 ORTHO05D008811 9.3e-31 137.1 121 58.7
Aqoxy3G01543 Aquilegia oxysepala HOM05D007048 ORTHO05D008811 9.3e-31 137.1 109 64.2
Aa31LG3G7430 Aethionema arabicum HOM05D007048 ORTHO05D008811 1.2e-30 136.7 123 56.9
Hund10045 Selenicereus undatus HOM05D007048 ORTHO05D008811 1.2e-30 136.7 121 58.7
vmacro19180 Vaccinium macrocarpon HOM05D007048 ORTHO05D008811 1.2e-30 136.7 115 63.5
BcaNung07188 Brassica carinata HOM05D007048 ORTHO05D008811 1.6e-30 136.3 118 61.9
C03p19340 Brassica napus HOM05D007048 ORTHO05D008811 1.6e-30 136.3 118 61.9
BolC3t14320H Brassica oleracea HOM05D007048 ORTHO05D008811 1.6e-30 136.3 118 61.9
Ciclev10033023m.g Citrus clementina HOM05D007048 ORTHO05D008811 1.6e-30 136.3 113 61.9
FAN08G0367 Fragaria x ananassa HOM05D006891 ORTHO05D008671 1.6e-30 136.3 107 62.6
FAN18G3224 Fragaria x ananassa HOM05D007048 ORTHO05D008811 1.6e-30 136.3 113 60.2
MBI07_g41901_MAGBIO Magnolia biondii HOM05D007048 ORTHO05D008811 2.7e-30 135.6 120 58.3
Hma1.2p1_0664F.1_g199000 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 3.5e-30 135.2 112 60.7
Peaxi162Scf01168g00014 Petunia axillaris HOM05D007048 ORTHO05D008811 3.5e-30 135.2 113 61.1
Sc22g0003410 Simmondsia chinensis HOM05D007048 ORTHO05D008811 3.5e-30 135.2 109 65.1
TAR475G0007 Trochodendron aralioides HOM05D007048 ORTHO05D008811 3.5e-30 135.2 113 60.2
TAR629G1913 Trochodendron aralioides HOM05D007048 ORTHO05D008811 3.5e-30 135.2 113 60.2
GSVIVG01008645001 Vitis vinifera HOM05D007048 ORTHO05D008811 3.5e-30 135.2 127 59.1
AL8G25120 Arabidopsis lyrata HOM05D007048 ORTHO05D008811 6.0e-30 134.4 118 60.2
Carub.0008s1094 Capsella rubella HOM05D007048 ORTHO05D008811 6.0e-30 134.4 118 61.0
CAN.G521.6 Capsicum annuum HOM05D007048 ORTHO05D008811 6.0e-30 134.4 128 57.8
QL10p000556 Quercus lobata HOM05D007048 ORTHO05D008811 7.9e-30 134.0 108 63.0
PSO339G2722 Papaver somniferum HOM05D007048 ORTHO05D008811 1.8e-29 132.9 122 54.9
Sp6g13100 Schrenkiella parvula HOM05D007048 ORTHO05D008811 1.8e-29 132.9 118 59.3
SGA_v2.0_scaffold40G15679 Striga asiatica HOM05D007048 ORTHO05D008811 1.8e-29 132.9 147 51.0
Sopen07g028330 Solanum pennellii HOM05D007048 ORTHO05D008820 2.3e-29 132.5 128 57.0
AT5G50930 Arabidopsis thaliana HOM05D007048 ORTHO05D008811 3.0e-29 132.1 118 60.2
Thhalv10014960m.g Eutrema salsugineum HOM05D007048 ORTHO05D008811 3.0e-29 132.1 113 61.1
HanXRQChr10g0316061 Helianthus annuus HOM05D007048 ORTHO05D008811 3.9e-29 131.7 121 55.4
ClCG03G004020 Citrullus lanatus HOM05D007048 ORTHO05D008811 8.7e-29 130.6 122 57.4
FAN04G3007 Fragaria x ananassa HOM05D007048 ORTHO05D008811 8.7e-29 130.6 108 62.0
Solyc07g054400.3 Solanum lycopersicum HOM05D007048 ORTHO05D008811 2.5e-28 129.0 128 56.2
PGSC0003DMG400018389 Solanum tuberosum HOM05D007048 ORTHO05D008811 2.5e-28 129.0 128 55.5
PSO384G0987 Papaver somniferum HOM05D007048 ORTHO05D008811 3.3e-28 128.6 120 54.2
Nitab4.5_0003119g0030 Nicotiana tabacum HOM05D007048 ORTHO05D008811 4.3e-28 128.3 120 56.7
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 9.6e-28 127.1 122 54.9
Nitab4.5_0002584g0070 Nicotiana tabacum HOM05D007048 ORTHO05D008811 2.1e-27 125.9 129 53.5
unitig_747.g21321 Utricularia gibba HOM05D007048 ORTHO05D008811 3.7e-27 125.2 157 44.6
Lsat_1_v5_gn_5_10141 Lactuca sativa HOM05D007048 ORTHO05D008811 6.2e-27 124.4 113 58.4
Sed0017197 Sechium edule HOM05D007048 ORTHO05D008811 2.4e-26 122.5 113 56.6
Os04g0397700 Oryza sativa ssp. japonica HOM05D007048 ORTHO05D008811 6.9e-26 120.9 110 57.3
PGR031G3072 Punica granatum HOM05D007048 ORTHO05D008811 2.6e-25 119.0 126 49.2
PGR031G2395 Punica granatum HOM05D007048 ORTHO05D008811 5.8e-25 117.9 126 49.2
PGR031G3844 Punica granatum HOM05D007048 ORTHO05D008811 5.8e-25 117.9 126 50.0
HPP92_008245 Vanilla planifolia HOM05D007048 ORTHO05D008811 7.1e-23 110.9 138 45.7
MD14G1147700 Malus domestica HOM05D007048 ORTHO05D008811 1.6e-22 109.8 86 62.8
FvH4_5g09450 Fragaria vesca HOM05D007048 ORTHO05D008811 6.0e-22 107.8 84 61.9
PGR044G0448 Punica granatum HOM05D007048 ORTHO05D008811 1.3e-21 106.7 106 52.8
Hma1.2p1_0664F.1_g198980 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 3.0e-21 105.5 90 57.8
Hma1.2p1_0664F.1_g198990 Hydrangea macrophylla HOM05D007048 ORTHO05D008811 3.9e-21 105.1 83 61.4
Eucgr.K02194 Eucalyptus grandis HOM05D007048 ORTHO05D008811 1.9e-20 102.8 143 42.7
SEGI_10153 Sequoiadendron giganteum HOM05D007048 ORTHO05D008811 4.3e-20 101.7 106 51.9
AUR62009534 Chenopodium quinoa HOM05D007048 ORTHO05D008811 1.6e-19 99.8 86 59.3
AUR62041697 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.8e-19 99.0 86 59.3
AUR62044083 Chenopodium quinoa HOM05D007048 ORTHO05D008811 2.8e-19 99.0 86 59.3
Nn3g16280 Nelumbo nucifera HOM05D007048 ORTHO05D008811 8.2e-19 97.4 85 58.8
CSS0012628 Camellia sinensis var. sinensis HOM05D007048 ORTHO05D008811 1.1e-18 97.1 113 52.2
ATR0582G167 Amborella trichopoda HOM05D007048 ORTHO05D008811 6.9e-18 94.4 123 41.5
BcaB01g01606 Brassica carinata HOM05D007048 ORTHO05D008811 3.8e-16 88.6 90 54.4
FAN13G1437 Fragaria x ananassa HOM05D007048 ORTHO05D008811 5.0e-16 88.2 80 57.5
Nn1g04900 Nelumbo nucifera HOM05D007048 ORTHO05D008811 5.0e-16 88.2 71 62.0
CDE05G0753 Ceratophyllum demersum HOM05D000512 ORTHO05D000861 6.1e-14 81.3 128 39.8
Zm00001eb084850 Zea mays HOM05D007048 ORTHO05D008811 6.1e-14 81.3 66 63.6
AagrBONN_evm.TU.Sc2ySwM_362.2725 Anthoceros agrestis HOM05D007048 ORTHO05D008811 2.5e-12 75.9 118 37.3
BcaB05g23641 Brassica carinata HOM05D007048 ORTHO05D008811 1.1e-10 70.5 67 55.2
Pp3c2_1780 Physcomitrium patens HOM05D007048 ORTHO05D008811 1.1e-10 70.5 99 40.4
Mapoly0109s0028 Marchantia polymorpha HOM05D007048 ORTHO05D008811 3.4e-09 65.5 104 38.5
Oeu009260.1 Olea europaea HOM05D007048 ORTHO05D008811 9.4e-07 57.4 40 65.0


User provided reference genes

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