Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G131300 Glycine max HOM05D005832 ORTHO05D007117 9.8e-98 360.5 240 100.0
Glyma.04G233500 Glycine max HOM05D005832 ORTHO05D007117 4.6e-87 325.1 241 92.1
Phvul.009G050400 Phaseolus vulgaris HOM05D005832 ORTHO05D007117 3.3e-85 318.9 240 90.8
VMungo1309G1177 Vigna mungo HOM05D005832 ORTHO05D007117 7.0e-80 301.2 240 89.2
Lj1g0002080 Lotus japonicus HOM05D005832 ORTHO05D007117 1.0e-78 297.4 238 88.7
Lalb_Chr08g0240071 Lupinus albus HOM05D005832 ORTHO05D007117 9.2e-72 274.2 240 85.4
Ca_16726_v3 Cicer arietinum L. HOM05D005832 ORTHO05D007117 2.7e-71 272.7 242 82.6
Medtr3g491890 Medicago truncatula HOM05D005832 ORTHO05D007117 5.6e-69 265.0 242 82.2
Psat5g075600 Pisum sativum HOM05D005832 ORTHO05D007117 9.5e-69 264.2 243 82.3
arahy.Tifrunner.gnm1.ann1.082NQD Arachis hypogaea HOM05D005832 ORTHO05D007117 2.6e-66 256.1 239 82.0
arahy.Tifrunner.gnm1.ann1.26JPZN Arachis hypogaea HOM05D005832 ORTHO05D007117 3.8e-65 252.3 239 81.2
Cfa016207 Carpinus fangiana HOM05D005832 ORTHO05D007117 2.2e-57 226.5 242 77.7
Haze_00239 Corylus avellana HOM05D005832 ORTHO05D007117 3.8e-57 225.7 243 77.4
Haze_00242 Corylus avellana HOM05D005832 ORTHO05D007117 6.4e-57 224.9 242 76.9
TPR.G33655 Trifolium pratense HOM05D005832 ORTHO05D007117 5.4e-56 221.9 198 86.9
CiPaw.06G044600 Carya illinoinensis HOM05D005832 ORTHO05D007117 6.6e-54 214.9 242 74.8
Dinv29254 Davidia involucrata HOM05D005832 ORTHO05D007117 1.1e-53 214.2 242 74.4
Oeu010700.1 Olea europaea HOM05D005832 ORTHO05D007117 4.3e-53 212.2 242 74.0
QL09p007826 Quercus lobata HOM05D005832 ORTHO05D007117 9.6e-53 211.1 241 73.9
Ciclev10021983m.g Citrus clementina HOM05D005832 ORTHO05D007117 2.1e-52 209.9 243 73.3
Gohir.A09G185500 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.6e-52 209.1 243 73.3
MELO3C019377.2 Cucumis melo HOM05D005832 ORTHO05D007117 6.2e-52 208.4 242 73.6
Sopen03g022710 Solanum pennellii HOM05D005832 ORTHO05D007117 6.2e-52 208.4 242 71.9
PGSC0003DMG400018522 Solanum tuberosum HOM05D005832 ORTHO05D007117 8.1e-52 208.0 242 71.9
Potri.012G018100 Populus trichocarpa HOM05D005832 ORTHO05D007117 1.1e-51 207.6 242 74.8
Prupe.2G314300 Prunus persica HOM05D005832 ORTHO05D007117 1.1e-51 207.6 238 74.4
MSTRG.8527 Avicennia marina HOM05D005832 ORTHO05D007117 1.4e-51 207.2 244 72.1
Solyc03g082890.3 Solanum lycopersicum HOM05D005832 ORTHO05D007117 1.8e-51 206.8 242 71.5
Atru.chr12.2262 Acer truncatum HOM05D005832 ORTHO05D007117 3.1e-51 206.1 242 74.4
CAN.G481.39 Capsicum annuum HOM05D005832 ORTHO05D007117 3.1e-51 206.1 242 72.7
Thecc.03G202400 Theobroma cacao HOM05D005832 ORTHO05D007117 3.1e-51 206.1 242 71.9
COL.COLO4_16805 Corchorus olitorius HOM05D005832 ORTHO05D007117 5.3e-51 205.3 186 88.2
TWI39G1154 Tripterygium wilfordii HOM05D005832 ORTHO05D007117 5.3e-51 205.3 240 73.8
TAR375G0053 Trochodendron aralioides HOM05D005832 ORTHO05D007117 5.3e-51 205.3 255 71.0
Nitab4.5_0007100g0060 Nicotiana tabacum HOM05D005832 ORTHO05D007117 6.9e-51 204.9 240 71.7
SalBow2G0471 Salvia bowleyana HOM05D005832 ORTHO05D007117 6.9e-51 204.9 247 72.1
ClCG05G009090 Citrullus lanatus HOM05D005832 ORTHO05D007117 9.0e-51 204.5 242 72.3
GSVIVG01038586001 Vitis vinifera HOM05D005832 ORTHO05D007117 9.0e-51 204.5 242 74.0
MBI18_g01156_MAGBIO Magnolia biondii HOM05D005832 ORTHO05D007117 3.4e-50 202.6 242 72.7
CsaV3_3G019700 Cucumis sativus L. HOM05D005832 ORTHO05D007117 4.5e-50 202.2 242 72.3
MD07G1294700 Malus domestica HOM05D005832 ORTHO05D007117 4.5e-50 202.2 236 74.2
Nn3g18931 Nelumbo nucifera HOM05D005832 ORTHO05D007117 7.6e-50 201.4 242 71.5
Peaxi162Scf00740g00233 Petunia axillaris HOM05D005832 ORTHO05D007117 1.3e-49 200.7 242 71.5
Gorai.006G202400 Gossypium raimondii HOM05D005832 ORTHO05D007117 1.7e-49 200.3 243 71.6
AUR62035562 Chenopodium quinoa HOM05D005832 ORTHO05D007117 2.2e-49 199.9 232 74.6
Sabra12G0014400 Salix brachista HOM05D005832 ORTHO05D007117 2.2e-49 199.9 242 73.6
CDE09G0779 Ceratophyllum demersum HOM05D005832 ORTHO05D007117 4.9e-49 198.7 240 69.6
Manes.01G039700 Manihot esculenta HOM05D005832 ORTHO05D007117 4.9e-49 198.7 248 71.0
Os10g0502000 Oryza sativa ssp. japonica HOM05D005832 ORTHO05D007117 4.9e-49 198.7 217 76.0
MD01G1223900 Malus domestica HOM05D005832 ORTHO05D007117 8.4e-49 198.0 232 74.6
Cc02_g01260 Coffea canephora HOM05D005832 ORTHO05D007117 3.2e-48 196.1 211 77.7
Gohir.D12G019400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.2e-48 196.1 188 85.1
Sc25g0000950 Simmondsia chinensis HOM05D005832 ORTHO05D007117 4.2e-48 195.7 240 71.7
EL10Ac3g05248 Beta vulgaris HOM05D005832 ORTHO05D007117 5.4e-48 195.3 242 60.7
Zm00001eb220820 Zea mays HOM05D005832 ORTHO05D007117 5.4e-48 195.3 223 75.3
Actinidia06134 Actinidia chinensis HOM05D005832 ORTHO05D007117 9.3e-48 194.5 240 70.4
AUR62006065 Chenopodium quinoa HOM05D005832 ORTHO05D007117 9.3e-48 194.5 197 80.7
Gorai.013G219100 Gossypium raimondii HOM05D005832 ORTHO05D007117 9.3e-48 194.5 259 46.7
PGR142G2159 Punica granatum HOM05D005832 ORTHO05D007117 9.3e-48 194.5 244 70.1
SGA_v2.0_scaffold125G33711 Striga asiatica HOM05D005832 ORTHO05D007117 2.1e-47 193.4 183 85.2
Hma1.2p1_0591F.1_g185170 Hydrangea macrophylla HOM05D005832 ORTHO05D007117 2.7e-47 193.0 242 71.5
Oeu055193.1 Olea europaea HOM05D005832 ORTHO05D007117 2.7e-47 193.0 264 55.3
Gorai.007G219400 Gossypium raimondii HOM05D005832 ORTHO05D007117 3.5e-47 192.6 240 69.6
Gorai.008G019700 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.6e-47 192.2 186 84.9
CANSAT21G0464 Cannabis sativa HOM05D005832 ORTHO05D007117 7.9e-47 191.4 242 71.9
Duzib084G1042 Durio zibethinus HOM05D005832 ORTHO05D007117 7.9e-47 191.4 242 71.1
Gorai.008G174000 Gossypium raimondii HOM05D005832 ORTHO05D007117 7.9e-47 191.4 240 70.4
Sp6g15630 Schrenkiella parvula HOM05D005832 ORTHO05D007117 7.9e-47 191.4 243 68.3
HanXRQChr08g0225151 Helianthus annuus HOM05D005832 ORTHO05D007117 1.0e-46 191.0 243 68.3
CARHR266630 Cardamine hirsuta HOM05D005832 ORTHO05D007117 1.8e-46 190.3 242 68.6
ATR0680G157 Amborella trichopoda HOM05D005832 ORTHO05D007117 2.3e-46 189.9 182 84.1
Thhalv10014535m.g Eutrema salsugineum HOM05D005832 ORTHO05D007117 2.3e-46 189.9 242 67.8
RcHm_v2.0_Chr1g0381721 Rosa chinensis HOM05D005832 ORTHO05D007117 2.3e-46 189.9 211 78.2
Sed0026931 Sechium edule HOM05D005832 ORTHO05D007117 8.7e-46 188.0 239 70.3
Aa31LG3G9660 Aethionema arabicum HOM05D005832 ORTHO05D007117 1.1e-45 187.6 242 68.2
PSO063G3297 Papaver somniferum HOM05D005832 ORTHO05D007117 2.5e-45 186.4 243 69.5
Eucgr.K00402 Eucalyptus grandis HOM05D005832 ORTHO05D007117 3.3e-45 186.0 222 62.2
FvH4_7g32120 Fragaria vesca HOM05D005832 ORTHO05D007117 3.3e-45 186.0 212 77.8
FAN06G2446 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.3e-45 186.0 212 77.8
Gorai.004G199200 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.3e-45 185.7 186 66.7
PSO170G4678 Papaver somniferum HOM05D005832 ORTHO05D007117 4.3e-45 185.7 214 76.6
unitig_578.g16672 Utricularia gibba HOM05D005832 ORTHO05D007117 7.4e-45 184.9 185 82.2
HPP92_013004 Vanilla planifolia HOM05D005832 ORTHO05D007117 7.4e-45 184.9 199 76.9
Lsat_1_v5_gn_9_63281 Lactuca sativa HOM05D005832 ORTHO05D007117 9.6e-45 184.5 195 77.9
FAN10G0265 Fragaria x ananassa HOM05D005832 ORTHO05D007117 1.3e-44 184.1 212 77.8
Carub.0008s1366 Capsella rubella HOM05D005832 ORTHO05D007117 1.6e-44 183.7 240 67.9
AT5G53490 Arabidopsis thaliana HOM05D005832 ORTHO05D007117 1.4e-43 180.6 240 66.7
vmacro10134 Vaccinium macrocarpon HOM05D005832 ORTHO05D007117 1.4e-43 180.6 241 70.1
SEGI_24850 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 4.0e-43 179.1 199 77.4
FAN10G0314 Fragaria x ananassa HOM05D005832 ORTHO05D007117 5.3e-43 178.7 215 76.7
Gohir.D07G112932 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.3e-43 178.7 265 44.2
ECA233G1427 Erigeron canadensis HOM05D005832 ORTHO05D007117 6.9e-43 178.3 185 81.6
BcaB08g35713 Brassica carinata HOM05D005832 ORTHO05D007117 9.0e-43 177.9 241 66.4
Migut.F01014 Erythranthe guttata HOM05D005832 ORTHO05D007117 4.5e-42 175.6 159 61.6
BcaC04g20449 Brassica carinata HOM05D005832 ORTHO05D007117 1.3e-41 174.1 245 66.9
C09p43330 Brassica napus HOM05D005832 ORTHO05D007117 1.3e-41 174.1 243 67.1
BolC9t57215H Brassica oleracea HOM05D005832 ORTHO05D007117 1.3e-41 174.1 245 66.9
A10p10930 Brassica napus HOM05D005832 ORTHO05D007117 1.7e-41 173.7 243 67.1
DCAR_020339 Daucus carota HOM05D005832 ORTHO05D007117 1.7e-41 173.7 184 81.0
Lj3A899T66 Lonicera japonica HOM05D005832 ORTHO05D007117 2.9e-41 172.9 159 61.6
Aqoxy6G02259 Aquilegia oxysepala HOM05D005832 ORTHO05D007117 3.2e-40 169.5 245 64.9
THA.LOC104799961 Tarenaya hassleriana HOM05D005832 ORTHO05D007117 3.2e-40 169.5 246 66.7
Rhsim09G0206900 Rhododendron simsii HOM05D005832 ORTHO05D007117 4.2e-40 169.1 184 82.1
Gohir.D09G180400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 4.6e-39 165.6 243 65.8
BraA10t43184Z Brassica rapa HOM05D005832 ORTHO05D007117 6.0e-39 165.2 180 81.7
Gohir.A05G409400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.0e-39 165.2 141 63.8
Gohir.A10G001400 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.0e-39 165.2 141 63.8
Gohir.D01G203700 Gossypium hirsutum HOM05D005832 ORTHO05D007117 6.0e-39 165.2 141 63.8
Pp3c23_22190 Physcomitrium patens HOM05D005832 ORTHO05D007117 6.0e-39 165.2 218 66.1
Gohir.D02G154600 Gossypium hirsutum HOM05D005832 ORTHO05D007117 3.9e-38 162.5 140 62.9
Gohir.A11G163501 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.1e-38 162.2 243 47.3
Gohir.A13G227280 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.1e-37 161.0 141 62.4
Gohir.D03G118200 Gossypium hirsutum HOM05D005832 ORTHO05D007117 1.5e-37 160.6 141 62.4
AL8G28210 Arabidopsis lyrata HOM05D005832 ORTHO05D007117 2.5e-37 159.8 166 84.9
Gohir.D11G247000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 2.5e-37 159.8 102 77.5
FAN03G0720 Fragaria x ananassa HOM05D005832 ORTHO05D007117 3.3e-37 159.5 166 82.5
Ah.13g070460 Amaranthus hybridus HOM05D005832 ORTHO05D007117 4.3e-37 159.1 111 73.9
FAN01G1435 Fragaria x ananassa HOM05D005832 ORTHO05D007117 4.3e-37 159.1 157 87.9
Gohir.D12G161000 Gossypium hirsutum HOM05D005832 ORTHO05D007117 5.3e-35 152.1 240 46.7
CSS0000669 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.5e-34 150.6 210 46.2
CSS0046458 Camellia sinensis var. sinensis HOM05D005832 ORTHO05D007117 1.5e-34 150.6 210 46.2
CBR_g40818 Chara braunii HOM05D005832 ORTHO05D007117 1.7e-33 147.1 128 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2510 Anthoceros agrestis HOM05D005832 ORTHO05D007117 6.5e-33 145.2 136 57.4
SMO111G0094 Selaginella moellendorffii HOM05D005832 ORTHO05D007117 9.3e-32 141.4 156 81.4
Gorai.004G257600 Gossypium raimondii HOM05D005832 ORTHO05D007117 4.6e-31 139.0 75 89.3
Duzib205G0233 Durio zibethinus HOM05D005832 ORTHO05D007117 1.3e-30 137.5 242 62.4
Mapoly0014s0126 Marchantia polymorpha HOM05D005832 ORTHO05D007117 3.9e-30 136.0 210 61.0
SEGI_05976 Sequoiadendron giganteum HOM05D005832 ORTHO05D007117 5.3e-19 99.0 62 72.6
Actinidia18663 Actinidia chinensis HOM05D005832 ORTHO05D007117 1.2e-10 71.2 110 80.0
Cre09.g404000 Chlamydomonas reinhardtii HOM05D005832 ORTHO05D007117 4.5e-10 69.3 180 39.4


User provided reference genes

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