Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 7.1e-303 1043.1 517 100.0
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 1.1e-298 1029.2 517 99.0
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 8.6e-293 1009.6 517 96.7
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.8e-291 1004.6 517 95.9
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 4.9e-288 993.8 517 94.8
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.1e-284 982.6 512 93.9
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.1e-284 982.6 512 93.9
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 2.8e-283 978.0 517 94.2
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 2.9e-280 968.0 504 93.7
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 6.4e-280 966.8 524 90.6
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 2.4e-279 964.9 499 94.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.2e-278 962.6 502 93.2
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 6.0e-278 960.3 508 92.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 6.6e-277 956.8 521 90.0
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 5.6e-276 953.7 528 88.6
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 7.4e-276 953.4 517 90.5
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 7.4e-276 953.4 518 90.2
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 9.6e-276 953.0 504 92.5
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.3e-275 952.6 514 89.9
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 1.3e-275 952.6 516 89.7
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 1.6e-275 952.2 502 91.4
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 4.8e-275 950.7 516 90.5
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.1e-274 949.5 518 90.3
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 1.4e-274 949.1 501 92.0
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 1.8e-274 948.7 517 90.7
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 2.4e-274 948.3 504 90.7
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.1e-274 948.0 519 90.0
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.1e-274 948.0 519 90.0
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.0e-274 947.6 516 90.5
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.0e-274 946.4 516 90.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.5e-273 945.7 511 90.0
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.5e-273 945.7 518 89.2
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 3.4e-273 944.5 516 89.3
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.4e-273 944.5 506 90.3
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 1.3e-272 942.6 517 89.6
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.3e-272 942.6 519 89.6
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 1.7e-272 942.2 514 89.7
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 2.2e-272 941.8 521 89.1
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 2.2e-272 941.8 518 89.4
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.9e-272 941.4 506 90.3
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.8e-272 941.0 516 90.1
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.9e-271 938.7 510 89.2
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 3.2e-271 937.9 519 88.8
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 3.2e-271 937.9 499 90.6
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 4.2e-271 937.6 515 88.7
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 5.5e-271 937.2 512 89.1
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 1.2e-270 936.0 518 89.0
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 2.1e-270 935.3 556 84.4
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 3.5e-270 934.5 503 89.9
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 3.5e-270 934.5 506 89.3
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.0e-269 932.9 516 88.8
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 1.3e-269 932.6 500 89.2
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 1.8e-269 932.2 519 88.1
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 1.8e-269 932.2 553 84.1
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.5e-268 929.1 507 89.3
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.5e-268 929.1 522 87.4
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 1.9e-268 928.7 515 89.1
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 3.3e-268 927.9 516 87.4
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.3e-268 927.9 524 87.8
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.3e-268 927.9 524 86.1
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 4.3e-268 927.5 519 87.7
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 4.3e-268 927.5 529 86.0
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 5.6e-268 927.2 513 88.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 2.1e-267 925.2 516 87.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 3.7e-267 924.5 516 86.8
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 8.1e-267 923.3 499 89.6
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.1e-266 922.9 516 86.6
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.1e-266 922.9 516 86.6
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 1.4e-266 922.5 507 88.6
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 1.4e-266 922.5 507 88.6
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 2.4e-266 921.8 503 88.1
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.1e-266 921.4 524 87.2
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 3.1e-266 921.4 526 87.3
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 5.3e-266 920.6 507 88.6
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 6.9e-266 920.2 524 87.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 6.9e-266 920.2 512 86.5
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 6.9e-266 920.2 505 89.3
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 9.0e-266 919.8 501 88.2
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.2e-265 919.5 502 88.4
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.5e-265 919.1 499 88.4
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 2.6e-265 918.3 519 86.7
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 3.4e-265 917.9 519 85.9
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 4.5e-265 917.5 507 88.2
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 4.5e-265 917.5 507 88.2
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 5.8e-265 917.1 524 87.0
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 1.3e-264 916.0 501 87.4
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 2.2e-264 915.2 497 88.1
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 8.4e-264 913.3 501 89.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.4e-263 912.5 501 87.4
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 9.3e-263 909.8 517 86.7
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.2e-262 909.4 502 87.5
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.3e-261 906.0 502 87.5
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.3e-261 905.2 523 84.3
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 6.7e-261 903.7 510 85.9
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.5e-260 901.7 501 86.2
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.6e-259 899.0 507 85.4
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.1e-259 898.7 502 86.3
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 3.1e-258 894.8 499 87.2
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.2e-257 892.9 520 83.5
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 6.5e-256 887.1 505 82.6
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 8.5e-256 886.7 511 84.7
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 8.5e-256 886.7 511 84.7
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.4e-255 885.9 492 85.2
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.3e-251 872.8 515 80.0
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 7.7e-249 863.6 500 84.6
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 7.9e-246 853.6 501 79.6
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.0e-244 849.0 500 82.0
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 5.0e-240 834.3 538 77.1
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.6e-238 829.3 501 78.0
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 3.1e-234 815.1 499 77.4
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.2e-230 803.1 520 75.0
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 3.0e-229 798.5 506 73.9
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 5.2e-229 797.7 473 84.8
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.7e-227 792.7 501 75.0
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 4.5e-225 784.6 514 72.2
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.2e-223 778.5 521 70.2
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 5.5e-223 777.7 514 71.2
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.2e-217 760.0 514 69.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.6e-217 759.6 521 76.0
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 3.2e-215 751.9 506 71.1
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.2e-214 750.0 516 74.8
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.8e-213 746.1 412 87.4
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 4.1e-210 734.9 397 91.4
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.9e-203 712.2 491 67.8
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 7.0e-202 707.6 499 73.3
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 4.7e-198 694.9 379 90.5
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 6.4e-187 657.9 523 60.6
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 1.2e-185 653.7 504 63.7
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.6e-182 643.3 419 79.2
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 2.8e-182 642.5 346 92.2
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 5.4e-178 628.2 344 90.1
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 2.4e-162 576.2 516 59.7
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 1.7e-155 553.5 355 78.6
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 7.1e-154 548.1 491 54.2
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 3.9e-152 542.3 288 89.9
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 1.5e-148 530.4 285 88.8
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 1.5e-140 503.8 275 91.3
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.7e-139 500.4 356 73.3
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 3.3e-135 486.1 510 50.0
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.4e-125 454.1 502 47.8
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 2.5e-122 443.4 285 79.3
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 3.6e-97 359.8 189 89.9
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 3.3e-82 310.1 422 40.3
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 6.8e-64 249.2 325 46.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 3.4e-63 246.9 413 41.2
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 4.2e-45 186.8 105 81.9
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 1.8e-40 171.4 93 87.1
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 5.8e-31 139.8 79 83.5
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 2.7e-28 131.0 78 76.9
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 9.0e-24 115.9 68 77.9
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 3.9e-19 100.5 57 80.7
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 2.4e-16 91.3 71 66.2
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 3.4e-15 87.4 125 44.8
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 7.9e-12 76.3 48 68.8
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 1.1e-08 65.9 35 82.9


User provided reference genes

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