Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G076600 Glycine max HOM05D000187 ORTHO05D000230 6.9e-221 770.4 404 100.0
Glyma.04G075400 Glycine max HOM05D000187 ORTHO05D000230 2.0e-188 662.5 396 88.6
Phvul.009G101200 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 2.8e-174 615.5 397 81.9
VMungo1309G0084 Vigna mungo HOM05D000187 ORTHO05D000230 1.5e-170 603.2 397 80.9
Medtr3g108808 Medicago truncatula HOM05D000187 ORTHO05D000230 4.0e-144 515.4 397 69.8
Ca_15667_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 3.5e-140 502.3 397 68.3
TPR.G12498 Trifolium pratense HOM05D000187 ORTHO05D000230 1.1e-136 490.7 397 66.8
arahy.Tifrunner.gnm1.ann1.AIUA8N Arachis hypogaea HOM05D000187 ORTHO05D000230 1.2e-135 487.3 400 65.8
Lj1g0013526 Lotus japonicus HOM05D000187 ORTHO05D000230 3.4e-135 485.7 397 68.8
arahy.Tifrunner.gnm1.ann1.9C1SB4 Arachis hypogaea HOM05D000187 ORTHO05D000230 4.4e-135 485.3 400 65.5
Lalb_Chr08g0243551 Lupinus albus HOM05D000187 ORTHO05D000230 6.4e-134 481.5 399 66.2
Lalb_Chr23g0269111 Lupinus albus HOM05D000187 ORTHO05D000230 1.9e-130 469.9 392 66.6
Lalb_Chr11g0064141 Lupinus albus HOM05D000187 ORTHO05D000230 2.4e-125 453.0 380 65.5
Glyma.14G134600 Glycine max HOM05D000187 ORTHO05D000230 2.3e-115 419.9 398 61.3
Cfa013268 Carpinus fangiana HOM05D000187 ORTHO05D000230 9.3e-109 397.9 393 57.3
Haze_21736 Corylus avellana HOM05D000187 ORTHO05D000230 1.5e-106 390.6 403 55.1
Glyma.17G198300 Glycine max HOM05D000187 ORTHO05D000230 8.2e-105 384.8 398 58.3
Phvul.001G059300 Phaseolus vulgaris HOM05D000187 ORTHO05D000230 1.0e-99 367.9 398 55.5
Psat5g025000 Pisum sativum HOM05D000187 ORTHO05D000230 3.9e-99 365.9 393 56.0
COL.COLO4_19034 Corchorus olitorius HOM05D000187 ORTHO05D000230 2.2e-94 350.1 410 51.5
QL12p025137 Quercus lobata HOM05D000187 ORTHO05D000230 3.6e-92 342.8 410 51.5
CiPaw.08G019700 Carya illinoinensis HOM05D000187 ORTHO05D000230 7.9e-92 341.7 409 50.9
Thecc.09G007100 Theobroma cacao HOM05D000187 ORTHO05D000230 7.9e-92 341.7 408 51.7
VMungo0647G0982 Vigna mungo HOM05D000187 ORTHO05D000230 6.7e-91 338.6 398 54.5
Lj5g0021013 Lotus japonicus HOM05D000187 ORTHO05D000230 2.8e-89 333.2 398 54.5
CiPaw.07G212600 Carya illinoinensis HOM05D000187 ORTHO05D000230 3.7e-89 332.8 409 50.6
Ca_12856_v3 Cicer arietinum L. HOM05D000187 ORTHO05D000230 6.3e-89 332.0 386 53.4
Gohir.D07G002200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 5.0e-86 322.4 408 49.5
Gorai.001G002000 Gossypium raimondii HOM05D000187 ORTHO05D000230 2.5e-85 320.1 408 49.0
Prupe.1G460200 Prunus persica HOM05D000187 ORTHO05D000230 6.1e-84 315.5 411 49.4
Atru.chr7.2640 Acer truncatum HOM05D000187 ORTHO05D000230 1.4e-83 314.3 415 49.9
TWI32G1364 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 3.9e-83 312.8 410 47.6
TWI34G1594 Tripterygium wilfordii HOM05D000187 ORTHO05D000230 2.2e-81 307.0 405 48.1
Dinv03436 Davidia involucrata HOM05D000187 ORTHO05D000230 3.4e-79 299.7 416 47.8
Duzib187G1641 Durio zibethinus HOM05D000187 ORTHO05D000230 1.0e-78 298.1 408 48.0
RcHm_v2.0_Chr6g0304981 Rosa chinensis HOM05D000187 ORTHO05D000230 1.7e-78 297.4 416 47.4
Duzib150G0762 Durio zibethinus HOM05D000187 ORTHO05D000230 1.2e-76 291.2 408 47.1
Ciclev10007897m.g Citrus clementina HOM05D000187 ORTHO05D000230 6.7e-75 285.4 414 46.1
Gorai.010G122800 Gossypium raimondii HOM05D000187 ORTHO05D000230 1.1e-74 284.6 408 45.8
Gohir.D06G108000 Gossypium hirsutum HOM05D000187 ORTHO05D000230 5.7e-74 282.3 408 45.3
FAN15G2261 Fragaria x ananassa HOM05D000187 ORTHO05D000230 1.3e-73 281.2 410 45.1
Potri.006G274700 Populus trichocarpa HOM05D000187 ORTHO05D000230 3.7e-73 279.6 421 46.3
Sabra06G0212700 Salix brachista HOM05D000187 ORTHO05D000230 2.4e-72 276.9 408 47.5
FvH4_2g36760 Fragaria vesca HOM05D000187 ORTHO05D000230 5.3e-72 275.8 416 44.7
FAN27G0017 Fragaria x ananassa HOM05D000187 ORTHO05D000230 4.5e-71 272.7 416 44.2
TPR.G12123 Trifolium pratense HOM05D000187 ORTHO05D000230 4.5e-71 272.7 401 45.6
Gohir.A06G105800 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.3e-70 271.2 403 44.2
Manes.03G003900 Manihot esculenta HOM05D000187 ORTHO05D000230 1.7e-70 270.8 406 45.8
Gohir.A05G064400 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.5e-69 267.7 400 46.5
FAN20G1520 Fragaria x ananassa HOM05D000187 ORTHO05D000230 4.2e-69 266.2 416 44.5
Sabra18G0013700 Salix brachista HOM05D000187 ORTHO05D000230 1.2e-68 264.6 398 47.7
Potri.018G005600 Populus trichocarpa HOM05D000187 ORTHO05D000230 3.6e-68 263.1 412 46.4
Gorai.009G067800 Gossypium raimondii HOM05D000187 ORTHO05D000230 8.0e-68 261.9 403 46.4
Gohir.A07G001860 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.0e-67 261.5 387 44.2
Gohir.D05G067000 Gossypium hirsutum HOM05D000187 ORTHO05D000230 3.0e-67 260.0 403 46.2
MD08G1128400 Malus domestica HOM05D000187 ORTHO05D000230 3.3e-66 256.5 409 43.0
Cpa.g.sc23.15 Carica papaya HOM05D000187 ORTHO05D000230 7.5e-66 255.4 323 50.8
CANSAT25G2724 Cannabis sativa HOM05D000187 ORTHO05D000230 1.1e-64 251.5 408 42.4
MD15G1107900 Malus domestica HOM05D000187 ORTHO05D000230 1.6e-60 237.7 410 41.5
Medtr1g009680 Medicago truncatula HOM05D000187 ORTHO05D000230 6.1e-60 235.7 397 45.1
Psat6g032960 Pisum sativum HOM05D000187 ORTHO05D000230 1.4e-59 234.6 396 44.4
Manes.16G135700 Manihot esculenta HOM05D000187 ORTHO05D000230 3.0e-59 233.4 411 41.8
ClCG08G012680 Citrullus lanatus HOM05D000187 ORTHO05D000230 8.3e-57 225.3 413 41.4
Actinidia06419 Actinidia chinensis HOM05D000187 ORTHO05D000230 2.7e-55 220.3 407 41.5
MELO3C011189.2 Cucumis melo HOM05D000187 ORTHO05D000230 1.1e-53 214.9 413 39.0
Gorai.013G212300 Gossypium raimondii HOM05D000187 ORTHO05D000230 1.5e-53 214.5 401 41.1
Sc09g0010160 Simmondsia chinensis HOM05D000187 ORTHO05D000230 1.9e-53 214.2 410 40.5
Duzib168G0567 Durio zibethinus HOM05D000187 ORTHO05D000230 1.4e-51 208.0 398 39.9
Gohir.D13G186300 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.8e-51 207.6 401 40.4
TAR129G0001 Trochodendron aralioides HOM05D000187 ORTHO05D000230 2.3e-51 207.2 437 37.3
CSS0044806 Camellia sinensis var. sinensis HOM05D000187 ORTHO05D000230 6.3e-49 199.1 411 39.2
Rhsim08G0136500 Rhododendron simsii HOM05D000187 ORTHO05D000230 1.1e-48 198.4 408 40.0
Gohir.A07G001740 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.4e-48 198.0 261 46.7
Sed0025754 Sechium edule HOM05D000187 ORTHO05D000230 9.2e-48 195.3 420 37.6
Gohir.A13G178200 Gossypium hirsutum HOM05D000187 ORTHO05D000230 2.9e-46 190.3 402 38.8
Lj7C750G13 Lonicera japonica HOM05D000187 ORTHO05D000230 9.5e-45 185.3 406 38.7
vmacro17671 Vaccinium macrocarpon HOM05D000187 ORTHO05D000230 9.5e-45 185.3 412 39.1
Hma1.2p1_0716F.1_g208100 Hydrangea macrophylla HOM05D000187 ORTHO05D000230 8.0e-44 182.2 410 38.0
Nitab4.5_0005481g0020 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.8e-43 181.0 414 37.7
Eucgr.C02025 Eucalyptus grandis HOM05D000187 ORTHO05D000230 4.0e-43 179.9 416 36.3
CsaV3_2G031390 Cucumis sativus L. HOM05D000187 ORTHO05D000230 6.8e-43 179.1 403 38.2
Nitab4.5_0001159g0200 Nicotiana tabacum HOM05D000187 ORTHO05D000230 2.6e-42 177.2 418 36.8
Solyc12g096420.2 Solanum lycopersicum HOM05D000187 ORTHO05D000230 5.8e-42 176.0 423 37.1
AUR62009069 Chenopodium quinoa HOM05D000187 ORTHO05D000230 1.3e-41 174.9 417 37.6
Sed0012007 Sechium edule HOM05D000187 ORTHO05D000230 1.7e-41 174.5 405 37.3
Hund19408 Selenicereus undatus HOM05D000187 ORTHO05D000230 1.7e-41 174.5 418 36.4
Sp6g32800 Schrenkiella parvula HOM05D000187 ORTHO05D000230 6.4e-41 172.6 412 36.2
MBI16_g27294_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000230 1.2e-39 168.3 436 37.6
Peaxi162Scf00045g00175 Petunia axillaris HOM05D000187 ORTHO05D000230 3.5e-39 166.8 400 37.2
Sopen12g032260 Solanum pennellii HOM05D000187 ORTHO05D000230 3.5e-39 166.8 424 36.1
EL10Ac2g03756 Beta vulgaris HOM05D000187 ORTHO05D000230 7.8e-39 165.6 408 35.8
Solyc08g006460.3 Solanum lycopersicum HOM05D000187 ORTHO05D000230 5.0e-38 162.9 405 38.3
AUR62020599 Chenopodium quinoa HOM05D000187 ORTHO05D000230 1.1e-37 161.8 418 36.1
Gohir.A06G069000 Gossypium hirsutum HOM05D000187 ORTHO05D000230 1.9e-37 161.0 258 41.1
Aa31LG3G16470 Aethionema arabicum HOM05D000187 ORTHO05D000230 2.5e-37 160.6 407 35.6
PGSC0003DMG400029544 Solanum tuberosum HOM05D000187 ORTHO05D000230 3.3e-37 160.2 406 36.5
Oeu014128.3 Olea europaea HOM05D000187 ORTHO05D000230 5.6e-37 159.5 411 35.3
AT5G24870 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 7.3e-37 159.1 406 36.9
Peaxi162Scf00288g00818 Petunia axillaris HOM05D000187 ORTHO05D000230 9.5e-37 158.7 409 34.0
CsaV3_3G047110 Cucumis sativus L. HOM05D000187 ORTHO05D000230 1.2e-36 158.3 416 36.8
Carub.0006s2272 Capsella rubella HOM05D000187 ORTHO05D000230 1.6e-36 157.9 408 35.5
Sopen08g002410 Solanum pennellii HOM05D000187 ORTHO05D000230 1.6e-36 157.9 405 37.5
Gohir.1Z049347 Gossypium hirsutum HOM05D000187 ORTHO05D000230 2.8e-36 157.1 204 45.6
Cc00_g05370 Coffea canephora HOM05D000187 ORTHO05D000230 3.6e-36 156.8 421 32.8
Hund03291 Selenicereus undatus HOM05D000187 ORTHO05D000230 4.7e-36 156.4 420 36.0
GSVIVG01035519001 Vitis vinifera HOM05D000187 ORTHO05D000230 4.7e-36 156.4 353 38.8
Peaxi162Scf00459g00839 Petunia axillaris HOM05D000187 ORTHO05D000230 6.2e-36 156.0 414 34.5
Oeu019280.2 Olea europaea HOM05D000187 ORTHO05D000230 1.4e-35 154.8 412 36.9
AL6G36540 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 6.8e-35 152.5 389 36.5
Nn8g40562 Nelumbo nucifera HOM05D000187 ORTHO05D000230 6.8e-35 152.5 439 33.3
THA.LOC104814968 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 6.8e-35 152.5 362 39.0
THA.LOC104799007 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 8.9e-35 152.1 407 36.9
Thhalv10004038m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 4.4e-34 149.8 402 35.8
Sed0021317 Sechium edule HOM05D000187 ORTHO05D000230 2.9e-33 147.1 416 34.6
DCAR_001822 Daucus carota HOM05D000187 ORTHO05D000230 8.3e-33 145.6 413 34.9
PSO063G1761 Papaver somniferum HOM05D000187 ORTHO05D000230 1.4e-32 144.8 432 32.2
PGSC0003DMG402026315 Solanum tuberosum HOM05D000187 ORTHO05D000230 1.9e-32 144.4 288 40.6
Nitab4.5_0004131g0020 Nicotiana tabacum HOM05D000187 ORTHO05D000230 3.2e-32 143.7 402 35.1
PSO170G0496 Papaver somniferum HOM05D000187 ORTHO05D000230 5.4e-32 142.9 434 32.9
Nitab4.5_0000555g0250 Nicotiana tabacum HOM05D000187 ORTHO05D000230 1.2e-31 141.7 406 35.5
Thhalv10013256m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 2.1e-31 141.0 414 33.6
BraA10t44745Z Brassica rapa HOM05D000187 ORTHO05D000230 2.7e-31 140.6 416 35.6
Sp2g22580 Schrenkiella parvula HOM05D000187 ORTHO05D000230 2.7e-31 140.6 401 33.9
MELO3C003626.2 Cucumis melo HOM05D000187 ORTHO05D000230 3.5e-31 140.2 416 35.6
MSTRG.11811 Avicennia marina HOM05D000187 ORTHO05D000230 1.3e-30 138.3 416 33.4
PGR044G2093 Punica granatum HOM05D000187 ORTHO05D000230 1.7e-30 137.9 405 32.8
AL6G21180 Arabidopsis lyrata HOM05D000187 ORTHO05D000230 2.3e-30 137.5 417 31.4
Ah.10g033860 Amaranthus hybridus HOM05D000187 ORTHO05D000230 3.0e-30 137.1 392 34.9
A10p26940 Brassica napus HOM05D000187 ORTHO05D000230 3.0e-30 137.1 416 35.3
MSTRG.13943 Avicennia marina HOM05D000187 ORTHO05D000230 8.6e-30 135.6 418 34.9
BcaB01g06269 Brassica carinata HOM05D000187 ORTHO05D000230 8.6e-30 135.6 412 33.3
AT5G10650 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 5.6e-29 132.9 414 32.9
Oeu008776.2 Olea europaea HOM05D000187 ORTHO05D000230 7.3e-29 132.5 410 32.7
DCAR_029257 Daucus carota HOM05D000187 ORTHO05D000230 9.5e-29 132.1 402 32.6
MSTRG.25777 Avicennia marina HOM05D000187 ORTHO05D000230 2.8e-28 130.6 320 39.7
BcaB08g37099 Brassica carinata HOM05D000187 ORTHO05D000230 4.4e-26 123.2 408 31.1
Aa31LG11G4070 Aethionema arabicum HOM05D000187 ORTHO05D000230 1.3e-25 121.7 416 32.0
CARHR202660 Cardamine hirsuta HOM05D000187 ORTHO05D000230 2.9e-25 120.6 402 32.1
BolC9t59434H Brassica oleracea HOM05D000187 ORTHO05D000230 4.1e-24 116.7 418 32.8
Gohir.D07G054800 Gossypium hirsutum HOM05D000187 ORTHO05D000230 4.1e-24 116.7 175 41.7
C09p66140 Brassica napus HOM05D000187 ORTHO05D000230 5.4e-24 116.3 418 32.8
Aqoxy7G02993 Aquilegia oxysepala HOM05D000187 ORTHO05D000230 7.1e-24 115.9 447 30.0
SalBow4G1160 Salvia bowleyana HOM05D003678 ORTHO05D004340 9.2e-24 115.5 313 34.5
A03p04680 Brassica napus HOM05D000187 ORTHO05D000230 6.6e-22 109.4 401 32.4
MBI14_g19441_MAGBIO Magnolia biondii HOM05D000187 ORTHO05D000230 1.5e-21 108.2 442 30.3
BcaNung05896 Brassica carinata HOM05D000187 ORTHO05D000230 4.3e-21 106.7 396 30.3
Carub.0006s0913 Capsella rubella HOM05D000187 ORTHO05D000230 5.6e-21 106.3 441 30.4
BraA03t09808Z Brassica rapa HOM05D000187 ORTHO05D000230 7.3e-21 105.9 401 31.7
THA.LOC104803874 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 1.2e-18 98.6 400 31.5
Cc09_g09120 Coffea canephora HOM05D000187 ORTHO05D000230 1.5e-18 98.2 218 36.2
TAR626G0312 Trochodendron aralioides HOM05D000187 ORTHO05D000230 2.0e-18 97.8 284 32.7
ATR0580G371 Amborella trichopoda HOM05D000187 ORTHO05D000230 2.6e-18 97.4 420 31.0
C03p05390 Brassica napus HOM05D000187 ORTHO05D000230 2.6e-18 97.4 404 31.4
A06p35650 Brassica napus HOM05D000187 ORTHO05D000230 7.6e-18 95.9 398 31.2
BraA06t26490Z Brassica rapa HOM05D000187 ORTHO05D000230 1.3e-17 95.1 396 30.6
Thhalv10025002m.g Eutrema salsugineum HOM05D000187 ORTHO05D000230 3.8e-17 93.6 397 31.0
C09p66470 Brassica napus HOM05D000187 ORTHO05D000230 4.9e-17 93.2 372 29.8
TAR626G0184 Trochodendron aralioides HOM05D000187 ORTHO05D000230 4.9e-17 93.2 128 46.1
BcaB05g21494 Brassica carinata HOM05D000187 ORTHO05D000230 7.1e-16 89.4 410 31.2
CARHR239340 Cardamine hirsuta HOM05D000187 ORTHO05D000230 7.1e-16 89.4 398 31.7
Sp7g29310 Schrenkiella parvula HOM05D000187 ORTHO05D000230 1.6e-15 88.2 399 31.8
THA.LOC104803600 Tarenaya hassleriana HOM05D000187 ORTHO05D000230 4.6e-15 86.7 294 36.1
Carub.0007s0911 Capsella rubella HOM05D000187 ORTHO05D000230 2.3e-14 84.3 405 29.9
CARHR188580 Cardamine hirsuta HOM05D000187 ORTHO05D000230 4.3e-13 80.1 409 29.6
Aqoxy7G02346 Aquilegia oxysepala HOM05D000187 ORTHO05D000230 5.6e-13 79.7 429 26.6
AT4G31450 Arabidopsis thaliana HOM05D000187 ORTHO05D000230 7.3e-13 79.3 400 30.8
BcaB01g06267 Brassica carinata HOM05D000187 ORTHO05D000230 1.6e-12 78.2 397 28.5
Lsat_1_v5_gn_5_51261 Lactuca sativa HOM05D000187 ORTHO05D000230 2.9e-09 67.4 320 28.4
BcaB01g05510 Brassica carinata HOM05D000187 ORTHO05D000230 3.8e-09 67.0 303 29.7
C07p58640 Brassica napus HOM05D000187 ORTHO05D000230 8.4e-09 65.9 399 29.6
HanXRQChr00c0981g0578061 Helianthus annuus HOM05D000187 ORTHO05D000230 1.1e-08 65.5 211 31.3
HanXRQChr03g0079821 Helianthus annuus HOM05D000187 ORTHO05D000230 1.1e-08 65.5 211 31.3
BcaNung04580 Brassica carinata HOM05D000187 ORTHO05D000230 1.9e-08 64.7 403 29.3
C09p66550 Brassica napus HOM05D000187 ORTHO05D000230 1.9e-08 64.7 209 31.1
C09p66640 Brassica napus HOM05D000187 ORTHO05D000230 1.9e-08 64.7 209 31.1
BcaNung04577 Brassica carinata HOM05D000187 ORTHO05D000230 4.2e-08 63.5 399 28.8
C07p42900 Brassica napus HOM05D000187 ORTHO05D000230 4.2e-08 63.5 396 27.3
BolC7t44818H Brassica oleracea HOM05D000187 ORTHO05D000230 4.2e-08 63.5 396 27.3
Migut.A00438 Erythranthe guttata HOM05D000187 ORTHO05D000230 9.3e-08 62.4 288 28.8
BolC7t46314H Brassica oleracea HOM05D000187 ORTHO05D000230 1.2e-07 62.0 402 28.6
BraA03t15113Z Brassica rapa HOM05D000187 ORTHO05D000230 1.6e-07 61.6 400 29.2
A03p60760 Brassica napus HOM05D000187 ORTHO05D000230 2.1e-07 61.2 400 29.2


User provided reference genes

Program Settings