Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 3.2e-263 911.8 664 100.0
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 2.6e-249 865.5 671 96.7
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 6.6e-245 850.9 673 94.2
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.2e-241 840.1 672 93.5
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 4.2e-231 805.1 669 90.6
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.6e-230 803.1 670 90.3
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.3e-229 799.3 671 90.0
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 7.3e-228 794.3 668 89.4
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 3.6e-227 792.0 670 89.9
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 6.9e-226 787.7 669 89.2
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 2.9e-224 782.3 668 89.1
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 4.8e-219 765.0 456 85.7
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 2.5e-199 699.5 667 82.5
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.6e-198 696.8 677 82.1
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 3.5e-198 695.7 673 81.3
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 2.5e-196 689.5 672 81.7
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 2.4e-194 682.9 670 81.5
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 3.1e-194 682.6 669 81.9
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 4.1e-194 682.2 678 81.0
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 2.0e-193 679.9 670 81.6
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 3.4e-193 679.1 670 80.6
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 1.7e-192 676.8 668 81.4
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 2.5e-191 672.9 670 79.9
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 5.5e-191 671.8 670 80.4
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 7.2e-191 671.4 682 79.5
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.2e-190 670.6 683 79.5
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 1.8e-189 666.8 463 74.3
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.9e-189 665.6 674 78.9
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 8.8e-189 664.5 674 79.7
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 3.3e-188 662.5 673 80.1
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.8e-186 656.8 666 80.2
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 5.3e-186 655.2 456 74.1
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 3.4e-185 652.5 664 80.1
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 2.2e-184 649.8 670 78.7
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 6.5e-184 648.3 677 78.9
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 1.4e-183 647.1 668 79.3
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 2.5e-183 646.4 668 79.2
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 2.5e-183 646.4 667 79.6
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 5.5e-183 645.2 668 79.5
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 9.4e-183 644.4 678 77.6
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 9.4e-183 644.4 675 77.3
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 2.1e-182 643.3 677 76.1
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 3.6e-182 642.5 666 79.3
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 3.0e-181 639.4 672 78.1
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 3.3e-180 636.0 673 77.9
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 4.4e-180 635.6 670 78.8
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 9.7e-180 634.4 668 78.4
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.7e-179 633.6 458 70.1
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 6.3e-179 631.7 674 77.0
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 1.4e-178 630.6 672 78.0
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 1.5e-175 620.5 657 78.2
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 7.2e-175 618.2 457 70.7
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 3.6e-174 615.9 679 75.3
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 6.1e-174 615.1 672 77.4
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 8.0e-174 614.8 670 76.9
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 5.2e-173 612.1 456 70.6
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 6.7e-173 611.7 460 69.6
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.5e-172 610.5 669 75.3
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 2.0e-172 610.1 677 74.9
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.3e-172 609.4 660 78.3
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.7e-171 607.1 667 75.6
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 2.2e-171 606.7 474 67.9
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 2.2e-171 606.7 667 75.6
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.8e-171 606.3 666 75.1
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 7.0e-170 601.7 689 74.6
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.5e-169 599.4 678 74.9
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 5.9e-169 598.6 670 75.5
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 1.0e-168 597.8 666 74.8
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 1.7e-168 597.0 673 75.0
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 1.7e-168 597.0 663 76.9
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 5.0e-168 595.5 666 74.6
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 6.5e-168 595.1 693 70.3
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 1.9e-167 593.6 665 74.4
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.2e-167 592.8 664 76.4
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.6e-166 590.5 666 74.8
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.1e-166 590.1 664 76.2
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 8.3e-163 578.2 665 73.5
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 2.7e-161 573.2 669 74.0
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 5.9e-161 572.0 570 85.3
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 2.9e-160 569.7 666 73.1
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.9e-160 569.7 668 75.1
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 1.9e-159 567.0 458 66.6
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 3.2e-159 566.2 666 73.4
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 7.2e-159 565.1 708 71.0
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 9.4e-159 564.7 613 78.6
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 2.7e-158 563.1 665 72.6
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 5.2e-157 558.9 665 72.6
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 5.2e-157 558.9 666 74.2
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 6.8e-157 558.5 450 65.8
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 4.4e-156 555.8 668 72.6
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.3e-155 554.3 610 74.4
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 8.3e-155 551.6 669 70.1
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 2.0e-153 547.0 466 61.6
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 2.3e-152 543.5 460 60.7
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.3e-152 543.5 667 60.9
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 2.9e-152 543.1 359 77.7
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 6.6e-152 542.0 578 55.2
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 8.6e-152 541.6 670 71.8
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.2e-150 537.7 722 64.5
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 5.4e-146 522.3 457 59.5
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 1.2e-142 511.1 566 82.0
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 3.1e-141 506.5 668 70.7
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 9.8e-140 501.5 391 66.5
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 2.0e-137 493.8 571 78.8
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 2.3e-133 480.3 665 68.0
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 6.4e-123 445.7 683 64.0
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 1.7e-120 437.6 680 64.6
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 3.0e-120 436.8 351 67.8
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.4e-117 427.2 630 58.7
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 4.0e-117 426.4 318 70.1
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 9.9e-116 421.8 704 62.6
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.8e-109 401.0 293 74.4
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 1.9e-106 391.0 391 53.2
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 5.8e-100 369.4 279 68.8
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.1e-87 328.6 661 59.8
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 1.6e-65 255.0 233 63.9
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 6.7e-64 249.6 194 69.1
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 3.5e-60 237.3 466 35.0
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 4.0e-56 223.8 146 82.9
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 1.3e-54 218.8 572 48.3
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 6.3e-54 216.5 143 78.3
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.5e-52 210.7 164 61.6
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 3.2e-50 204.1 489 31.1
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 3.6e-49 200.7 274 49.3
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 3.0e-48 197.6 193 48.2
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 9.8e-47 192.6 293 46.1
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.2e-46 191.4 143 68.5
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 3.5e-44 184.1 533 28.3
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.1e-42 179.1 157 61.8
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.8e-38 164.5 130 60.0
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 4.1e-37 160.6 290 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 2.3e-35 154.8 147 52.4
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 8.6e-35 152.9 143 60.1
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 3.0e-32 144.4 116 64.7
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 2.3e-27 128.3 294 88.4
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 8.9e-24 116.3 108 56.5
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.1e-21 107.5 66 78.8
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 4.1e-21 107.5 286 36.7
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.9e-18 98.6 75 64.0
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 6.2e-17 93.6 64 65.6
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.5e-15 89.0 82 52.4
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 3.7e-14 84.3 459 23.1
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 9.2e-13 79.7 497 23.5
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.7e-11 75.5 51 76.5
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 2.3e-11 75.1 53 73.6
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.3e-10 71.2 52 71.2
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 7.3e-10 70.1 178 30.3
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 9.5e-10 69.7 51 72.5
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.8e-07 60.5 135 35.6


User provided reference genes

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