Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G045600 Glycine max HOM05D001879 ORTHO05D007957 0.0e+00 1565.1 850 100.0
Glyma.04G045100 Glycine max HOM05D001879 ORTHO05D007957 0.0e+00 1414.8 852 90.6
VMungo1309G0716 Vigna mungo HOM05D001879 ORTHO05D007957 0.0e+00 1343.2 859 84.4
Phvul.009G071000 Phaseolus vulgaris HOM05D001879 ORTHO05D007957 0.0e+00 1335.5 857 84.2
Ca_15906_v3 Cicer arietinum L. HOM05D001879 ORTHO05D007957 0.0e+00 1152.1 860 74.0
Lj1g0023876 Lotus japonicus HOM05D001879 ORTHO05D007957 0.0e+00 1149.0 859 75.0
arahy.Tifrunner.gnm1.ann1.0Z12M9 Arachis hypogaea HOM05D001879 ORTHO05D007957 0.0e+00 1132.9 864 74.3
arahy.Tifrunner.gnm1.ann1.D4I9HU Arachis hypogaea HOM05D001879 ORTHO05D007957 0.0e+00 1129.8 861 74.0
Lalb_Chr11g0062861 Lupinus albus HOM05D001879 ORTHO05D007957 0.0e+00 1112.4 878 72.6
Psat0s3943g0040 Pisum sativum HOM05D001879 ORTHO05D007957 0.0e+00 1110.9 862 72.2
Medtr3g103040 Medicago truncatula HOM05D001879 ORTHO05D007957 5.8e-312 1073.9 865 70.1
TPR.G33684 Trifolium pratense HOM05D001879 ORTHO05D007957 9.5e-297 1023.5 909 65.6
Cfa013682 Carpinus fangiana HOM05D001879 ORTHO05D007957 3.5e-275 951.8 898 61.0
CANSAT11G0135 Cannabis sativa HOM05D001879 ORTHO05D007957 1.6e-267 926.4 902 58.8
Dinv44961 Davidia involucrata HOM05D001879 ORTHO05D007957 3.5e-267 925.2 796 63.6
QL12p037915 Quercus lobata HOM05D001879 ORTHO05D007957 6.6e-266 921.0 877 61.0
Gorai.002G135500 Gossypium raimondii HOM05D001879 ORTHO05D007957 1.1e-265 920.2 900 60.6
Gohir.A01G122900 Gossypium hirsutum HOM05D001879 ORTHO05D007957 4.0e-263 911.8 909 59.5
Eucgr.F02257 Eucalyptus grandis HOM05D001879 ORTHO05D007957 5.3e-263 911.4 801 63.0
Potri.014G016900 Populus trichocarpa HOM05D001879 ORTHO05D007957 1.2e-262 910.2 901 57.7
MD15G1071100 Malus domestica HOM05D001879 ORTHO05D007957 1.5e-262 909.8 806 63.5
Gohir.D01G110700 Gossypium hirsutum HOM05D001879 ORTHO05D007957 4.5e-262 908.3 912 59.6
MD08G1085900 Malus domestica HOM05D001879 ORTHO05D007957 5.8e-262 907.9 842 61.4
GSVIVG01009355001 Vitis vinifera HOM05D001879 ORTHO05D007957 9.9e-262 907.1 820 60.4
FvH4_2g33210 Fragaria vesca HOM05D001879 ORTHO05D007957 2.5e-257 892.5 916 56.4
Actinidia38101 Actinidia chinensis HOM05D001879 ORTHO05D007957 2.4e-255 885.9 863 56.7
FAN27G1994 Fragaria x ananassa HOM05D001879 ORTHO05D007957 4.0e-255 885.2 912 56.5
TWI56G1363 Tripterygium wilfordii HOM05D001879 ORTHO05D007957 4.5e-254 881.7 932 53.5
FAN20G0243 Fragaria x ananassa HOM05D001879 ORTHO05D007957 1.7e-253 879.8 916 55.8
CiPaw.07G175800 Carya illinoinensis HOM05D001879 ORTHO05D007957 6.5e-253 877.9 900 57.2
FAN15G2911 Fragaria x ananassa HOM05D001879 ORTHO05D007957 4.2e-252 875.2 917 54.5
RcHm_v2.0_Chr6g0309461 Rosa chinensis HOM05D001879 ORTHO05D007957 9.3e-252 874.0 806 60.4
COL.COLO4_28516 Corchorus olitorius HOM05D001879 ORTHO05D007957 3.5e-251 872.1 810 61.2
Hma1.2p1_0210F.1_g089520 Hydrangea macrophylla HOM05D001879 ORTHO05D007957 6.0e-251 871.3 810 59.6
Sabra14G0010700 Salix brachista HOM05D001879 ORTHO05D007957 1.3e-250 870.2 909 54.8
Manes.05G181300 Manihot esculenta HOM05D001879 ORTHO05D007957 3.0e-250 869.0 809 60.0
Actinidia08249 Actinidia chinensis HOM05D001879 ORTHO05D007957 8.7e-250 867.5 776 60.6
Lj4A759G42 Lonicera japonica HOM05D001879 ORTHO05D007957 9.6e-249 864.0 866 56.8
MELO3C016811.2 Cucumis melo HOM05D001879 ORTHO05D007648 2.4e-247 859.4 874 55.6
Prupe.1G423800 Prunus persica HOM05D001879 ORTHO05D007957 2.0e-246 856.3 887 56.8
CsaV3_4G035000 Cucumis sativus L. HOM05D001879 ORTHO05D007957 1.7e-245 853.2 872 55.4
ClCG05G020560 Citrullus lanatus HOM05D001879 ORTHO05D007957 2.7e-243 845.9 907 53.8
FAN24G3463 Fragaria x ananassa HOM05D001879 ORTHO05D007957 7.9e-243 844.3 962 53.6
Cpa.g.sc142.17 Carica papaya HOM05D001879 ORTHO05D007957 2.2e-240 836.3 884 56.0
Nitab4.5_0003803g0010 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.8e-240 835.9 804 57.0
PGR031G1956 Punica granatum HOM05D001879 ORTHO05D007957 3.7e-240 835.5 894 55.5
CAN.G724.12 Capsicum annuum HOM05D001879 ORTHO05D007957 9.0e-239 830.9 731 60.7
EL10Ac1g02390 Beta vulgaris HOM05D001879 ORTHO05D007957 5.0e-237 825.1 878 53.5
Solyc04g077930.4 Solanum lycopersicum HOM05D001879 ORTHO05D007957 2.5e-236 822.8 736 60.2
Nitab4.5_0000164g0140 Nicotiana tabacum HOM05D001879 ORTHO05D007957 2.1e-235 819.7 807 57.1
Cc10_g05700 Coffea canephora HOM05D001879 ORTHO05D007957 3.6e-235 818.9 893 52.3
Sopen04g031530 Solanum pennellii HOM05D001879 ORTHO05D007957 7.9e-235 817.8 736 59.9
Aqoxy6G02668 Aquilegia oxysepala HOM05D001879 ORTHO05D007957 1.7e-232 810.1 814 55.4
Hund05306 Selenicereus undatus HOM05D001879 ORTHO05D007957 2.8e-232 809.3 839 54.4
THA.LOC104820515 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 1.4e-231 807.0 802 57.2
THA.LOC104812592 Tarenaya hassleriana HOM05D001879 ORTHO05D007957 5.0e-229 798.5 812 54.6
vmacro22058 Vaccinium macrocarpon HOM05D001879 ORTHO05D007957 7.2e-228 794.7 931 51.9
Ciclev10003334m.g Citrus clementina HOM05D001879 ORTHO05D007648 4.7e-227 792.0 790 55.2
Migut.N02775 Erythranthe guttata HOM05D001879 ORTHO05D007957 1.5e-225 786.9 814 53.9
HanXRQChr01g0027941 Helianthus annuus HOM05D001879 ORTHO05D007957 2.6e-225 786.2 880 52.7
AUR62038791 Chenopodium quinoa HOM05D001879 ORTHO05D007957 1.1e-223 780.8 890 50.6
PSO675G4263 Papaver somniferum HOM05D001879 ORTHO05D007957 1.4e-223 780.4 778 56.9
AUR62037429 Chenopodium quinoa HOM05D001879 ORTHO05D007957 5.3e-223 778.5 810 53.3
Nn1g04585 Nelumbo nucifera HOM05D001879 ORTHO05D007957 6.5e-221 771.5 894 51.7
AL1G41290 Arabidopsis lyrata HOM05D001879 ORTHO05D007957 7.2e-220 768.1 807 53.2
PSO541G1802 Papaver somniferum HOM05D001879 ORTHO05D007957 1.6e-219 766.9 778 55.5
SalBow6G3417 Salvia bowleyana HOM05D001879 ORTHO05D007957 1.6e-219 766.9 877 52.2
Ah.05g167110 Amaranthus hybridus HOM05D001879 ORTHO05D007957 6.1e-219 765.0 884 50.7
AT1G27752 Arabidopsis thaliana HOM05D001879 ORTHO05D007957 1.4e-218 763.8 897 52.6
Sp1g23990 Schrenkiella parvula HOM05D001879 ORTHO05D007957 1.4e-218 763.8 738 56.8
Aa31sc113G40 Aethionema arabicum HOM05D001879 ORTHO05D007957 3.0e-218 762.7 725 55.9
Oeu057374.1 Olea europaea HOM05D001879 ORTHO05D007957 6.7e-218 761.5 800 54.0
Thhalv10006764m.g Eutrema salsugineum HOM05D001879 ORTHO05D007957 8.8e-218 761.1 725 56.3
BolC3t19706H Brassica oleracea HOM05D001879 ORTHO05D007957 2.0e-217 760.0 725 55.6
Sc26g0004180 Simmondsia chinensis HOM05D001879 ORTHO05D007957 4.4e-217 758.8 868 50.8
Carub.0001s2627 Capsella rubella HOM05D001879 ORTHO05D007957 9.7e-217 757.7 805 53.7
A08p26070 Brassica napus HOM05D001879 ORTHO05D007957 2.2e-216 756.5 793 53.6
BraA08t34557Z Brassica rapa HOM05D001879 ORTHO05D007957 2.2e-216 756.5 793 54.2
C03p74580 Brassica napus HOM05D001879 ORTHO05D007957 6.3e-216 755.0 741 54.9
SGA_v2.0_scaffold152G36803 Striga asiatica HOM05D001879 ORTHO05D007957 6.5e-213 745.0 799 53.2
CDE02G0795 Ceratophyllum demersum HOM05D001879 ORTHO05D007957 6.8e-210 734.9 788 52.9
BcaC01g01572 Brassica carinata HOM05D001879 ORTHO05D007957 4.7e-203 712.2 800 51.5
ATR0208G030 Amborella trichopoda HOM05D001879 ORTHO05D007957 2.6e-201 706.4 841 48.9
ECA246G2822 Erigeron canadensis HOM05D001879 ORTHO05D007957 2.6e-201 706.4 736 52.4
Thecc.08G089900 Theobroma cacao HOM05D001879 ORTHO05D007957 2.2e-200 703.4 677 60.4
SalBow8G5177 Salvia bowleyana HOM05D001879 ORTHO05D007957 2.9e-197 693.0 874 49.0
PGSC0003DMG400021524 Solanum tuberosum HOM05D001879 ORTHO05D007957 1.6e-187 660.6 633 58.0
Sed0020869 Sechium edule HOM05D001879 ORTHO05D007957 3.4e-185 652.9 699 53.9
Zm00001eb007600 Zea mays HOM05D001879 ORTHO05D007957 1.9e-180 637.1 809 46.5
Os03g0205000 Oryza sativa ssp. japonica HOM05D001879 ORTHO05D007957 9.5e-180 634.8 755 48.5
unitig_578.g16146 Utricularia gibba HOM05D001879 ORTHO05D007957 3.2e-175 619.8 794 45.7
HPP92_009537 Vanilla planifolia HOM05D001879 ORTHO05D007957 1.8e-170 604.0 740 47.6
Atru.chr13.820 Acer truncatum HOM05D001879 ORTHO05D007648 6.9e-162 575.5 412 68.7
Lsat_1_v5_gn_6_112340 Lactuca sativa HOM05D001879 ORTHO05D007957 7.6e-161 572.0 862 44.0
CARHR027270 Cardamine hirsuta HOM05D001879 ORTHO05D007957 4.6e-158 562.8 586 53.2
Haze_22326 Corylus avellana HOM05D001879 ORTHO05D007957 6.6e-157 558.9 489 61.6
TAR381G0637 Trochodendron aralioides HOM05D001879 ORTHO05D007957 1.3e-149 534.6 481 61.5
CSS0023334 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 6.7e-149 532.3 408 66.9
DCAR_009884 Daucus carota HOM05D001879 ORTHO05D007957 9.9e-145 518.5 872 40.9
Peaxi162Scf00081g00176 Petunia axillaris HOM05D001879 ORTHO05D007957 2.6e-137 493.8 578 50.7
MD03G1160700 Malus domestica HOM05D001879 ORTHO05D007957 4.3e-132 476.5 400 63.0
Mapoly0067s0042 Marchantia polymorpha HOM05D001879 ORTHO05D007957 9.4e-103 379.0 699 36.3
TAR381G1515 Trochodendron aralioides HOM05D001879 ORTHO05D007957 5.4e-90 336.7 373 54.2
SHI08396 Sapria himalayana HOM05D001879 ORTHO05D007957 1.9e-87 328.2 475 43.4
CANSAT25G3038 Cannabis sativa HOM05D001879 ORTHO05D007957 6.1e-86 323.2 222 73.0
SMO347G0602 Selaginella moellendorffii HOM05D001879 ORTHO05D007957 9.8e-84 315.8 792 32.1
AagrBONN_evm.TU.Sc2ySwM_362.2893 Anthoceros agrestis HOM05D001879 ORTHO05D007957 1.4e-82 312.0 711 32.6
Pp3c2_23190 Physcomitrium patens HOM05D001879 ORTHO05D007957 3.5e-81 307.4 982 28.9
CBR_g57086 Chara braunii HOM05D001879 ORTHO05D007957 5.7e-76 290.0 1083 28.3
Haze_22325 Corylus avellana HOM05D001879 ORTHO05D007957 3.0e-56 224.6 225 59.6
SEGI_28261 Sequoiadendron giganteum HOM05D001879 ORTHO05D007957 1.5e-55 222.2 212 55.2
BraA09t40950Z Brassica rapa HOM05D001879 ORTHO05D007957 1.3e-48 199.1 128 74.2
Atru.chr13.821 Acer truncatum HOM05D001879 ORTHO05D007957 5.1e-48 197.2 249 52.6
CSS0041216 Camellia sinensis var. sinensis HOM05D001879 ORTHO05D007957 7.3e-39 166.8 197 50.8
SHI08398 Sapria himalayana HOM05D001879 ORTHO05D007957 4.5e-36 157.5 219 42.9
HanXRQChr05g0145561 Helianthus annuus HOM05D001879 ORTHO05D007957 5.3e-21 107.5 63 73.0
MCO02G333 Micromonas commoda HOM05D001879 ORTHO05D007957 4.3e-15 87.8 713 24.7
SHI08400 Sapria himalayana HOM05D001879 ORTHO05D007957 9.0e-13 80.1 55 67.3
Cfa000625 Carpinus fangiana HOM05D001879 ORTHO05D007957 2.6e-12 78.6 158 39.2
Cfa010565 Carpinus fangiana HOM05D001879 ORTHO05D007957 3.8e-11 74.7 53 69.8
HPP92_009536 Vanilla planifolia HOM05D001879 ORTHO05D007957 6.5e-11 73.9 64 54.7
C05p26450 Brassica napus HOM05D001879 ORTHO05D007957 1.9e-10 72.4 45 75.6
BolC5t31366H Brassica oleracea HOM05D001879 ORTHO05D007957 1.9e-10 72.4 45 75.6
Cre13.g568750 Chlamydomonas reinhardtii HOM05D001879 ORTHO05D007957 4.2e-10 71.2 74 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1487 Anthoceros agrestis HOM05D001879 ORTHO05D007957 7.9e-09 67.0 95 42.1


User provided reference genes

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