Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1567.0 803 100.0
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 0.0e+00 1483.4 801 94.1
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 0.0e+00 1365.9 804 87.3
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 0.0e+00 1354.3 804 86.7
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 0.0e+00 1253.4 807 80.4
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 0.0e+00 1251.1 806 80.9
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 0.0e+00 1226.5 812 78.9
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 0.0e+00 1224.2 808 79.2
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 0.0e+00 1213.7 810 78.3
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1180.6 813 76.3
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 0.0e+00 1174.5 781 78.5
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 0.0e+00 1173.7 813 76.1
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 7.8e-309 1063.5 821 68.7
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 4.3e-307 1057.7 816 69.2
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 8.1e-306 1053.5 820 67.7
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 1.3e-303 1046.2 782 69.2
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 3.0e-300 1035.0 821 67.4
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 1.9e-299 1032.3 821 67.4
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 2.8e-298 1028.5 818 66.9
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 4.8e-298 1027.7 818 66.1
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 2.4e-297 1025.4 828 66.5
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 6.9e-297 1023.8 825 66.5
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 6.4e-295 1017.3 818 67.1
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 1.2e-293 1013.1 827 66.3
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 2.3e-292 1008.8 810 65.4
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.0e-292 1008.4 819 66.3
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.9e-291 1005.7 819 66.1
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 1.3e-290 1003.0 823 65.1
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 2.1e-290 1002.3 821 65.9
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.8e-290 1001.9 819 66.1
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 8.1e-290 1000.3 822 64.7
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.4e-289 999.6 819 66.1
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 5.3e-289 997.7 822 65.3
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.2e-286 988.0 811 64.9
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.2e-286 988.0 809 64.8
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.1e-285 985.7 868 62.4
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 6.7e-284 980.7 820 64.4
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.3e-283 978.4 817 64.4
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 4.3e-283 978.0 820 64.4
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 1.3e-282 976.5 827 62.9
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.6e-282 976.1 823 63.5
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 3.4e-280 968.4 823 63.7
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 1.4e-278 963.0 819 62.8
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.4e-278 963.0 815 63.6
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 4.6e-277 958.0 784 64.4
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 6.7e-276 954.1 807 62.7
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 6.7e-276 954.1 807 62.7
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 2.8e-274 948.7 821 62.4
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 1.4e-273 946.4 806 61.9
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 2.4e-273 945.7 814 62.5
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 3.1e-273 945.3 824 61.4
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 2.9e-271 938.7 806 62.5
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.9e-270 936.0 826 61.5
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 7.9e-269 930.6 824 60.4
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 2.3e-268 929.1 828 62.3
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 3.0e-268 928.7 819 60.2
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 9.7e-267 923.7 825 60.4
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 9.4e-262 907.1 839 60.7
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 1.2e-261 906.7 802 59.7
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 1.6e-261 906.4 797 60.5
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.1e-261 904.4 823 59.7
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 1.0e-260 903.7 732 66.4
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.4e-260 903.3 797 60.6
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.3e-258 896.7 821 59.8
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 1.7e-258 896.3 821 59.8
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 2.8e-258 895.6 804 60.4
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 3.7e-258 895.2 804 60.6
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 2.6e-256 889.0 797 60.0
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 3.0e-252 875.5 810 59.6
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 3.3e-251 872.1 808 58.5
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 3.3e-251 872.1 815 58.0
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.7e-250 869.8 827 58.0
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.4e-249 865.9 827 57.7
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 3.1e-249 865.5 829 57.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 5.3e-249 864.8 807 57.2
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 9.1e-249 864.0 794 59.2
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 9.1e-249 864.0 826 57.9
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 2.0e-248 862.8 830 57.3
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 2.9e-247 859.0 801 57.4
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.5e-247 857.8 824 57.4
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.5e-246 856.7 809 57.5
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 2.5e-246 855.9 822 57.7
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 7.2e-246 854.4 828 57.2
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 6.1e-245 851.3 826 57.0
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 6.3e-242 841.3 823 57.4
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 8.3e-242 840.9 793 58.0
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 2.0e-240 836.3 819 57.0
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 3.5e-240 835.5 823 57.0
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 4.5e-240 835.1 830 57.1
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 4.5e-240 835.1 830 57.1
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 4.5e-240 835.1 830 57.1
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 4.4e-235 818.5 797 56.3
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 6.6e-231 804.7 827 55.7
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.6e-229 800.0 814 55.8
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 6.2e-221 771.5 622 67.2
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 1.2e-213 747.3 797 52.8
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 4.6e-192 675.6 493 73.6
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.5e-190 669.8 641 57.4
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.2e-185 652.9 653 55.4
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 7.1e-185 651.7 653 55.4
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.7e-184 649.8 486 69.3
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 7.9e-184 648.3 503 68.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 1.3e-183 647.5 499 69.5
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.6e-181 640.6 499 68.3
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 1.9e-177 627.1 480 69.4
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.2e-176 624.4 500 66.8
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.5e-171 607.4 492 66.1
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.5e-171 607.4 492 66.1
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 5.7e-166 589.0 851 43.2
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 7.2e-161 572.0 493 63.7
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 1.1e-156 558.1 455 63.3
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 9.1e-156 555.1 559 53.1
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.5e-155 554.3 473 61.7
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 7.2e-153 545.4 467 62.5
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 2.6e-150 537.0 740 44.5
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 6.3e-149 532.3 457 63.5
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 4.1e-148 529.6 457 61.5
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 8.5e-146 521.9 458 61.4
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.4e-143 514.6 462 60.4
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 1.8e-143 514.2 458 60.3
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 1.4e-140 504.6 474 57.4
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.4e-140 503.8 524 52.7
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 5.0e-138 496.1 454 60.4
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.1e-137 495.0 412 62.6
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 4.7e-136 489.6 456 57.9
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 6.7e-135 485.7 462 57.6
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 7.5e-134 482.3 693 42.4
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.6e-131 474.6 471 56.3
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 7.2e-129 465.7 694 41.2
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.2e-128 464.9 739 41.0
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.0e-127 461.8 451 55.7
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 5.2e-127 459.5 453 55.8
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 6.8e-127 459.1 453 55.8
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.2e-123 448.4 761 39.0
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 2.5e-121 440.7 468 52.8
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 6.8e-119 432.6 343 65.9
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 3.1e-116 423.7 460 53.0
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 3.0e-98 364.0 312 59.9
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.1e-95 355.5 639 40.2
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.0e-90 337.4 273 67.0
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.9e-89 334.7 463 43.4
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.5e-89 334.3 231 78.4
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 1.6e-80 305.1 197 79.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.5e-65 255.4 358 41.6
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 2.8e-56 224.6 784 28.2
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.1e-55 222.6 147 70.7
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.0e-54 218.4 160 70.0
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 2.0e-54 218.4 160 70.0
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 1.6e-48 198.7 450 32.0
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 1.2e-46 192.6 396 35.9
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 4.5e-46 190.7 138 68.1
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.2e-43 182.6 142 61.3
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 8.8e-26 123.2 91 62.6
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.1e-19 100.5 87 64.4
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.0e-17 95.5 154 42.2
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.0e-17 95.5 154 41.6
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 2.8e-16 91.7 69 58.0
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 4.1e-15 87.8 97 48.5
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 1.4e-10 72.8 54 61.1


User provided reference genes

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