Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 2.9e-199 698.4 353 100.0
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.6e-176 622.9 355 89.3
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 5.9e-160 567.8 332 87.3
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.7e-154 549.7 358 81.3
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 4.1e-153 545.0 355 80.3
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 8.1e-141 504.2 332 79.5
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.1e-140 503.8 320 80.6
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 5.8e-131 471.5 355 71.3
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 7.6e-131 471.1 362 69.6
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.4e-129 466.8 358 67.3
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 3.5e-128 462.2 358 67.0
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 4.6e-128 461.8 359 67.4
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 7.8e-128 461.1 361 66.8
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 5.1e-127 458.4 357 67.8
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 1.1e-126 457.2 362 66.9
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 3.3e-126 455.7 362 68.0
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 7.3e-126 454.5 500 55.4
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 2.1e-125 453.0 363 65.6
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 2.8e-125 452.6 364 65.1
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 1.1e-124 450.7 363 64.2
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 1.1e-124 450.7 366 65.6
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 4.0e-124 448.7 359 66.6
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 6.9e-124 448.0 370 65.7
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 1.2e-123 447.2 363 63.9
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 2.0e-123 446.4 365 66.0
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 4.4e-123 445.3 359 65.7
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 7.6e-123 444.5 286 76.2
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 9.9e-123 444.1 363 63.4
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 2.2e-122 443.0 359 65.5
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 3.8e-122 442.2 339 67.6
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.8e-122 442.2 323 68.7
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 4.9e-122 441.8 289 74.7
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 6.4e-122 441.4 289 76.5
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.4e-121 440.3 312 71.2
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 1.9e-121 439.9 318 69.5
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 2.4e-121 439.5 355 64.2
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 4.2e-121 438.7 525 51.6
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 7.1e-121 438.0 347 64.8
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 9.3e-121 437.6 303 73.9
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.6e-120 436.8 303 73.6
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.1e-120 436.4 353 64.6
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.1e-120 436.4 353 64.6
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 2.7e-120 436.0 311 70.7
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 2.7e-120 436.0 311 70.7
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 2.7e-120 436.0 338 65.7
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 3.5e-120 435.6 312 70.2
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 4.6e-120 435.3 294 72.8
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 7.8e-120 434.5 337 66.5
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 1.3e-119 433.7 350 64.0
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.3e-119 433.7 303 72.9
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 3.0e-119 432.6 288 76.4
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 3.0e-119 432.6 335 65.4
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 3.9e-119 432.2 310 71.6
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 5.1e-119 431.8 379 62.3
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 6.6e-119 431.4 296 72.6
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 6.6e-119 431.4 315 68.6
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 8.7e-119 431.0 361 64.8
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 8.7e-119 431.0 322 68.0
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 8.7e-119 431.0 350 63.4
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 8.7e-119 431.0 315 68.6
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.5e-118 430.3 357 63.9
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 2.5e-118 429.5 348 64.9
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 4.3e-118 428.7 351 65.2
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 7.3e-118 427.9 392 59.7
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 2.8e-117 426.0 296 71.6
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.8e-116 423.3 356 62.9
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 6.9e-116 421.4 287 72.5
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 1.2e-115 420.6 281 74.0
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 1.5e-115 420.2 391 59.1
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 2.0e-115 419.9 362 61.3
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 5.8e-115 418.3 289 72.7
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 9.9e-115 417.5 288 72.2
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.3e-114 417.2 334 64.7
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 3.8e-114 415.6 341 61.3
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 1.1e-113 414.1 310 67.1
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 1.9e-113 413.3 344 64.2
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 1.8e-111 406.8 236 87.7
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.3e-111 406.4 348 62.1
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.0e-111 406.0 268 76.9
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 1.9e-110 403.3 300 67.0
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.1e-108 397.5 299 68.9
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 1.2e-107 394.0 343 60.9
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 7.6e-107 391.3 280 71.1
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 6.4e-106 388.3 279 69.5
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 4.2e-105 385.6 287 71.4
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 6.7e-103 378.3 360 58.6
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 4.8e-101 372.1 361 56.0
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 5.3e-100 368.6 265 66.8
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 1.2e-99 367.5 422 53.6
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 1.8e-95 353.6 356 56.7
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 1.1e-92 344.4 583 40.1
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 7.6e-91 338.2 219 75.3
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 1.4e-89 334.0 275 60.7
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 2.5e-89 333.2 228 71.9
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 2.1e-88 330.1 253 68.4
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 2.7e-88 329.7 286 58.0
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 3.9e-87 325.9 195 80.5
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 4.8e-85 318.9 301 54.5
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 8.2e-85 318.2 195 79.0
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 4.6e-80 302.4 281 54.8
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 4.4e-78 295.8 393 48.1
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 9.7e-78 294.7 200 77.5
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 6.9e-76 288.5 181 77.9
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 5.7e-70 268.9 161 86.3
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.4e-68 264.2 170 79.4
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 2.2e-61 240.4 202 68.3
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 7.0e-60 235.3 316 43.0
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.5e-54 217.6 182 59.9
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 2.8e-53 213.4 234 53.8
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 1.4e-52 211.1 194 59.8
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 7.7e-51 205.3 204 50.5
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 8.6e-50 201.8 322 38.2
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.0e-43 180.6 216 51.4
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 1.3e-37 161.4 209 47.8
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.7e-35 153.7 120 68.3
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 2.6e-30 137.1 107 61.7
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 7.0e-28 129.0 101 65.3
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 1.1e-25 121.7 107 60.7
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 2.5e-25 120.6 105 61.0
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 6.8e-23 112.5 92 58.7
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 4.3e-17 93.2 54 85.2
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 2.8e-16 90.5 74 66.2
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 8.1e-16 89.0 77 54.5
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.3e-13 81.6 153 32.7
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.1e-12 78.6 108 43.5
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.4e-12 76.3 58 65.5
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 9.2e-12 75.5 70 58.6
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 9.2e-12 75.5 70 58.6
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 9.2e-12 75.5 70 58.6
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 9.2e-12 75.5 70 58.6
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 1.2e-11 75.1 70 58.6
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.5e-11 73.6 70 57.1
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 6.0e-11 72.8 70 57.1
Psat2g069600 Pisum sativum HOM05D000263 ORTHO05D009363 1.1e-09 68.6 44 81.8
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 1.2e-06 58.5 38 68.4


User provided reference genes

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