Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.06G020400 Glycine max HOM05D004247 ORTHO05D004994 4.8e-83 311.2 168 100.0
Glyma.04G020300 Glycine max HOM05D004247 ORTHO05D004994 2.6e-73 278.9 168 92.9
Phvul.009G020300 Phaseolus vulgaris HOM05D004247 ORTHO05D004994 4.1e-66 255.0 169 85.2
VMungo1309G1934 Vigna mungo HOM05D004247 ORTHO05D004994 5.3e-66 254.6 168 83.9
Lj1g0015317 Lotus japonicus HOM05D004247 ORTHO05D004994 2.6e-65 252.3 168 80.4
MD15G1006300 Malus domestica HOM05D004247 ORTHO05D004994 2.6e-65 252.3 168 81.0
Ca_15453_v3 Cicer arietinum L. HOM05D004247 ORTHO05D004994 5.9e-65 251.1 169 82.8
CiPaw.08G069600 Carya illinoinensis HOM05D004247 ORTHO05D004994 1.0e-64 250.4 169 84.6
Prupe.1G358900 Prunus persica HOM05D004247 ORTHO05D004994 3.8e-64 248.4 169 79.9
Cfa014015 Carpinus fangiana HOM05D004247 ORTHO05D004994 1.9e-63 246.1 169 82.8
TWI56G0334 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 1.9e-63 246.1 168 82.7
QL02p013016 Quercus lobata HOM05D004247 ORTHO05D004994 4.2e-63 245.0 168 81.5
MD08G1007200 Malus domestica HOM05D004247 ORTHO05D004994 5.5e-63 244.6 169 80.5
Haze_22717 Corylus avellana HOM05D004247 ORTHO05D004994 1.2e-62 243.4 169 81.7
arahy.Tifrunner.gnm1.ann1.X4SEKR Arachis hypogaea HOM05D004247 ORTHO05D004994 1.6e-62 243.0 172 81.4
arahy.Tifrunner.gnm1.ann1.X5CP5W Arachis hypogaea HOM05D004247 ORTHO05D004994 4.6e-62 241.5 172 81.4
RcHm_v2.0_Chr6g0303721 Rosa chinensis HOM05D004247 ORTHO05D004994 6.1e-62 241.1 169 79.9
COL.COLO4_26078 Corchorus olitorius HOM05D004247 ORTHO05D004994 7.9e-62 240.7 170 80.6
CiPaw.07G143100 Carya illinoinensis HOM05D004247 ORTHO05D004994 2.3e-61 239.2 169 79.3
FAN15G0804 Fragaria x ananassa HOM05D004247 ORTHO05D004994 3.0e-61 238.8 169 78.7
Gorai.009G190800 Gossypium raimondii HOM05D004247 ORTHO05D004994 3.9e-61 238.4 170 80.0
PSO541G1800 Papaver somniferum HOM05D004247 ORTHO05D004994 3.9e-61 238.4 168 76.8
FAN27G2657 Fragaria x ananassa HOM05D004247 ORTHO05D004994 5.1e-61 238.0 169 78.7
FvH4_2g37890 Fragaria vesca HOM05D004247 ORTHO05D004994 6.7e-61 237.7 169 78.7
Gohir.D05G185400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 8.7e-61 237.3 170 79.4
Potri.005G246100 Populus trichocarpa HOM05D004247 ORTHO05D004994 8.7e-61 237.3 171 78.9
FAN20G0823 Fragaria x ananassa HOM05D004247 ORTHO05D004994 1.1e-60 236.9 169 77.5
Nitab4.5_0007524g0020 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.5e-60 236.5 169 77.5
ClCG05G015390 Citrullus lanatus HOM05D004247 ORTHO05D004994 1.9e-60 236.1 170 79.4
PSO675G9160 Papaver somniferum HOM05D004247 ORTHO05D004994 2.5e-60 235.7 168 75.6
Gohir.A05G182400 Gossypium hirsutum HOM05D004247 ORTHO05D004994 4.3e-60 235.0 170 79.4
CsaV3_3G046150 Cucumis sativus L. HOM05D004247 ORTHO05D004994 7.4e-60 234.2 168 74.4
Peaxi162Scf00174g00103 Petunia axillaris HOM05D004247 ORTHO05D004994 7.4e-60 234.2 169 76.9
Medtr3g114850 Medicago truncatula HOM05D004247 ORTHO05D004994 9.7e-60 233.8 169 76.3
MELO3C003725.2 Cucumis melo HOM05D004247 ORTHO05D004994 1.3e-59 233.4 168 74.4
TPR.G38114 Trifolium pratense HOM05D004247 ORTHO05D004994 1.3e-59 233.4 169 75.1
TAR381G1019 Trochodendron aralioides HOM05D004247 ORTHO05D004994 1.3e-59 233.4 168 77.4
Ciclev10002698m.g Citrus clementina HOM05D004247 ORTHO05D004994 1.6e-59 233.0 170 76.5
Nitab4.5_0001936g0030 Nicotiana tabacum HOM05D004247 ORTHO05D004994 2.8e-59 232.3 169 74.6
TAR625G1162 Trochodendron aralioides HOM05D004247 ORTHO05D004994 3.7e-59 231.9 168 73.8
Lalb_Chr03g0033581 Lupinus albus HOM05D004247 ORTHO05D004994 4.8e-59 231.5 169 75.7
Cpa.g.sc26.256 Carica papaya HOM05D004247 ORTHO05D004994 6.3e-59 231.1 169 75.7
Thecc.08G052400 Theobroma cacao HOM05D004247 ORTHO05D004994 6.3e-59 231.1 168 75.0
Sabra05G0190200 Salix brachista HOM05D004247 ORTHO05D004994 1.1e-58 230.3 171 76.6
Sabra02G0012900 Salix brachista HOM05D004247 ORTHO05D004994 1.4e-58 229.9 168 74.4
Lj4C16T12 Lonicera japonica HOM05D004247 ORTHO05D004994 1.8e-58 229.6 170 73.5
Cc10_g01080 Coffea canephora HOM05D004247 ORTHO05D004994 2.4e-58 229.2 168 75.0
Sc26g0004480 Simmondsia chinensis HOM05D004247 ORTHO05D004994 2.4e-58 229.2 170 74.1
CANSAT25G3567 Cannabis sativa HOM05D004247 ORTHO05D004994 3.1e-58 228.8 172 71.5
Duzib116G0390 Durio zibethinus HOM05D004247 ORTHO05D004994 3.1e-58 228.8 168 75.0
MBI08_g05719_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 4.1e-58 228.4 164 75.6
Nitab4.5_0003030g0010 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.1e-58 228.4 170 73.5
GSVIVG01008733001 Vitis vinifera HOM05D004247 ORTHO05D004994 4.1e-58 228.4 170 75.9
Aqoxy6G01936 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 5.3e-58 228.0 168 73.8
Manes.05G142000 Manihot esculenta HOM05D004247 ORTHO05D004994 1.2e-57 226.9 171 73.7
Potri.002G016000 Populus trichocarpa HOM05D004247 ORTHO05D004994 1.5e-57 226.5 171 76.0
MBI05_g34744_MAGBIO Magnolia biondii HOM05D004247 ORTHO05D004994 2.0e-57 226.1 169 74.6
THA.LOC104813771 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 2.0e-57 226.1 171 76.0
Actinidia37957 Actinidia chinensis HOM05D004247 ORTHO05D004994 2.6e-57 225.7 168 76.2
Lalb_Chr01g0008481 Lupinus albus HOM05D004247 ORTHO05D004994 2.6e-57 225.7 170 72.4
Psat5g011080 Pisum sativum HOM05D004247 ORTHO05D004994 2.6e-57 225.7 170 74.1
CAN.G311.79 Capsicum annuum HOM05D004247 ORTHO05D004994 4.5e-57 224.9 171 74.9
Lalb_Chr19g0131621 Lupinus albus HOM05D004247 ORTHO05D004994 4.5e-57 224.9 169 73.4
Dinv31897 Davidia involucrata HOM05D004247 ORTHO05D004994 7.7e-57 224.2 162 75.9
Ah.04g150590 Amaranthus hybridus HOM05D004247 ORTHO05D004994 1.0e-56 223.8 169 72.2
SGA_v2.0_scaffold19G08591 Striga asiatica HOM05D004247 ORTHO05D004994 1.0e-56 223.8 165 73.9
Lj4P802T100 Lonicera japonica HOM05D004247 ORTHO05D004994 1.7e-56 223.0 170 71.8
Rhsim07G0251400 Rhododendron simsii HOM05D004247 ORTHO05D004994 1.7e-56 223.0 170 73.5
CARHR020810 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.9e-56 222.2 173 74.0
Sed0002819 Sechium edule HOM05D004247 ORTHO05D004994 2.9e-56 222.2 168 70.8
Aqoxy6G01937 Aquilegia oxysepala HOM05D004247 ORTHO05D004994 3.8e-56 221.9 169 71.6
Sed0013890 Sechium edule HOM05D004247 ORTHO05D004994 5.0e-56 221.5 168 73.2
BcaB03g12872 Brassica carinata HOM05D004247 ORTHO05D004994 6.5e-56 221.1 168 71.4
CSS0046333 Camellia sinensis var. sinensis HOM05D004247 ORTHO05D004994 1.1e-55 220.3 171 73.7
SalBow6G1848 Salvia bowleyana HOM05D004247 ORTHO05D004994 1.1e-55 220.3 169 70.4
A08p29430 Brassica napus HOM05D004247 ORTHO05D004994 1.4e-55 219.9 169 72.8
BraA08t34878Z Brassica rapa HOM05D004247 ORTHO05D004994 1.4e-55 219.9 169 72.8
C08p20070 Brassica napus HOM05D004247 ORTHO05D004994 1.9e-55 219.5 169 72.2
A06p16430 Brassica napus HOM05D004247 ORTHO05D004994 2.5e-55 219.2 168 70.8
BraA06t24747Z Brassica rapa HOM05D004247 ORTHO05D004994 2.5e-55 219.2 168 70.8
Carub.0001s1985 Capsella rubella HOM05D004247 ORTHO05D004994 2.5e-55 219.2 168 73.2
BcaC07g39030 Brassica carinata HOM05D004247 ORTHO05D004994 3.2e-55 218.8 169 72.2
Thhalv10008749m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 4.2e-55 218.4 168 70.8
AT1G20340 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 7.2e-55 217.6 168 72.0
Hma1.2p1_0023F.1_g015810 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 7.2e-55 217.6 174 71.3
AL1G33170 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 9.4e-55 217.2 168 72.6
BcaB07g32038 Brassica carinata HOM05D004247 ORTHO05D004994 9.4e-55 217.2 169 71.0
Lsat_1_v5_gn_0_680 Lactuca sativa HOM05D004247 ORTHO05D004994 2.1e-54 216.1 168 67.3
CARHR069640 Cardamine hirsuta HOM05D004247 ORTHO05D004994 2.7e-54 215.7 172 69.8
A07p15730 Brassica napus HOM05D004247 ORTHO05D004994 3.6e-54 215.3 168 68.5
A07p15830 Brassica napus HOM05D004247 ORTHO05D004994 3.6e-54 215.3 168 68.5
BraA07t29309Z Brassica rapa HOM05D004247 ORTHO05D004994 3.6e-54 215.3 168 68.5
Migut.N03188 Erythranthe guttata HOM05D004247 ORTHO05D004994 3.6e-54 215.3 170 69.4
THA.LOC104809663 Tarenaya hassleriana HOM05D004247 ORTHO05D004994 3.6e-54 215.3 171 69.0
BolC8t49642H Brassica oleracea HOM05D004247 ORTHO05D004994 6.1e-54 214.5 166 71.7
Lsat_1_v5_gn_8_28601 Lactuca sativa HOM05D004247 ORTHO05D004994 6.1e-54 214.5 169 69.8
Sp1g18060 Schrenkiella parvula HOM05D004247 ORTHO05D004994 6.1e-54 214.5 172 69.2
BcaC05g25945 Brassica carinata HOM05D004247 ORTHO05D004994 7.9e-54 214.2 169 69.2
C05p18970 Brassica napus HOM05D004247 ORTHO05D004994 7.9e-54 214.2 169 69.2
BolC5t30597H Brassica oleracea HOM05D004247 ORTHO05D004994 7.9e-54 214.2 169 69.2
ECA232G0296 Erigeron canadensis HOM05D004247 ORTHO05D004994 7.9e-54 214.2 169 71.6
Hma1.2p1_2322F.1_g319850 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 1.0e-53 213.8 170 68.8
AL2G36140 Arabidopsis lyrata HOM05D004247 ORTHO05D004994 1.8e-53 213.0 172 68.0
Aa31LG4G6220 Aethionema arabicum HOM05D004247 ORTHO05D004994 2.3e-53 212.6 165 69.1
ATR0661G060 Amborella trichopoda HOM05D004247 ORTHO05D004994 2.3e-53 212.6 168 69.0
Hma1.2p1_3012F.1_g331630 Hydrangea macrophylla HOM05D004247 ORTHO05D004994 3.0e-53 212.2 170 68.2
TWI12G1003 Tripterygium wilfordii HOM05D004247 ORTHO05D004994 3.0e-53 212.2 154 77.3
BolC7t42849H Brassica oleracea HOM05D004247 ORTHO05D004994 3.9e-53 211.8 168 67.9
BcaNung03373 Brassica carinata HOM05D004247 ORTHO05D004994 6.7e-53 211.1 168 67.3
C07p23120 Brassica napus HOM05D004247 ORTHO05D004994 6.7e-53 211.1 168 67.3
Rhsim06G0011800 Rhododendron simsii HOM05D004247 ORTHO05D004994 8.8e-53 210.7 168 68.5
AT1G76100 Arabidopsis thaliana HOM05D004247 ORTHO05D004994 4.3e-52 208.4 172 67.4
BcaC08g47292 Brassica carinata HOM05D004247 ORTHO05D004994 4.3e-52 208.4 172 67.4
A07p41660 Brassica napus HOM05D004247 ORTHO05D004994 4.3e-52 208.4 172 68.6
BolC6t40043H Brassica oleracea HOM05D004247 ORTHO05D004994 4.3e-52 208.4 172 67.4
PGR031G2466 Punica granatum HOM05D004247 ORTHO05D004994 4.3e-52 208.4 171 70.2
BraA07t31695Z Brassica rapa HOM05D004247 ORTHO05D004994 5.7e-52 208.0 172 68.0
C06p50040 Brassica napus HOM05D004247 ORTHO05D004994 7.4e-52 207.6 172 68.0
CDE02G3101 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 7.4e-52 207.6 167 68.3
Oeu021483.1 Olea europaea HOM05D004247 ORTHO05D004994 7.4e-52 207.6 170 69.4
CDE04G1887 Ceratophyllum demersum HOM05D004247 ORTHO05D004994 1.7e-51 206.5 160 72.5
DCAR_013894 Daucus carota HOM05D004247 ORTHO05D004994 4.8e-51 204.9 171 69.0
HanXRQChr05g0146621 Helianthus annuus HOM05D004247 ORTHO05D004994 4.8e-51 204.9 168 67.9
Aa31LG7G4700 Aethionema arabicum HOM05D004247 ORTHO05D004994 8.2e-51 204.1 168 66.1
Solyc04g082010.1 Solanum lycopersicum HOM05D004247 ORTHO05D004994 8.2e-51 204.1 171 68.4
Sopen04g035660 Solanum pennellii HOM05D004247 ORTHO05D004994 8.2e-51 204.1 171 68.4
Oeu051143.1 Olea europaea HOM05D004247 ORTHO05D004994 1.1e-50 203.8 169 67.5
Sp5g31220 Schrenkiella parvula HOM05D004247 ORTHO05D004994 1.1e-50 203.8 171 66.1
Thhalv10019237m.g Eutrema salsugineum HOM05D004247 ORTHO05D004994 1.4e-50 203.4 173 68.2
Oeu027609.1 Olea europaea HOM05D004247 ORTHO05D004994 3.1e-50 202.2 169 66.9
BcaC08g47103 Brassica carinata HOM05D004247 ORTHO05D004994 4.1e-50 201.8 170 65.9
unitig_899.g15551 Utricularia gibba HOM05D004247 ORTHO05D004994 6.9e-50 201.1 171 67.3
ECA232G3771 Erigeron canadensis HOM05D004247 ORTHO05D004994 7.7e-49 197.6 169 66.3
PGSC0003DMG400041620 Solanum tuberosum HOM05D004247 ORTHO05D004994 1.3e-48 196.8 171 66.1
EL10Ac1g02063 Beta vulgaris HOM05D004247 ORTHO05D004994 1.9e-47 193.0 161 66.5
Nn6g31900 Nelumbo nucifera HOM05D004247 ORTHO05D004994 3.2e-47 192.2 145 77.2
ECA233G0125 Erigeron canadensis HOM05D004247 ORTHO05D004994 4.2e-47 191.8 163 63.8
Migut.C00904 Erythranthe guttata HOM05D004247 ORTHO05D004994 2.1e-46 189.5 170 65.3
AUR62013862 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.2e-43 179.5 102 85.3
AUR62036731 Chenopodium quinoa HOM05D004247 ORTHO05D004994 2.8e-43 179.1 102 85.3
Zm00001eb268360 Zea mays HOM05D004247 ORTHO05D004994 2.0e-41 172.9 169 60.9
Dinv39560 Davidia involucrata HOM05D004247 ORTHO05D004994 5.9e-41 171.4 100 82.0
TPR.G8442 Trifolium pratense HOM05D004247 ORTHO05D004994 1.0e-40 170.6 100 81.0
Zm00001eb379570 Zea mays HOM05D004247 ORTHO05D004994 1.1e-39 167.2 170 58.8
Os06g0101600 Oryza sativa ssp. japonica HOM05D004247 ORTHO05D004994 1.6e-38 163.3 169 58.0
SEGI_02730 Sequoiadendron giganteum HOM05D004247 ORTHO05D004994 1.4e-37 160.2 174 54.0
Sc02g0008920 Simmondsia chinensis HOM05D004247 ORTHO05D004994 6.3e-35 151.4 111 72.1
Pp3c21_4230 Physcomitrium patens HOM05D004247 ORTHO05D004994 1.2e-33 147.1 168 50.6
HPP92_015000 Vanilla planifolia HOM05D004247 ORTHO05D004994 1.0e-32 144.1 217 44.7
AagrBONN_evm.TU.Sc2ySwM_228.703 Anthoceros agrestis HOM05D004247 ORTHO05D004994 1.7e-32 143.3 174 47.1
Pp3c19_21160 Physcomitrium patens HOM05D004247 ORTHO05D004994 2.9e-32 142.5 172 49.4
Pp3c18_13090 Physcomitrium patens HOM05D004247 ORTHO05D004994 9.4e-31 137.5 173 45.7
SMO351G0102 Selaginella moellendorffii HOM05D004247 ORTHO05D004994 4.7e-30 135.2 176 45.5
PRCOL_00002380 Prasinoderma coloniale HOM05D004247 ORTHO05D004994 8.8e-29 131.0 122 54.1
CBR_g18572 Chara braunii HOM05D004247 ORTHO05D004994 2.0e-28 129.8 175 49.1
Nitab4.5_0006806g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 5.4e-26 121.7 70 81.4
Cre03.g182551 Chlamydomonas reinhardtii HOM05D004247 ORTHO05D004994 1.2e-25 120.6 152 50.7
Nitab4.5_0001476g0060 Nicotiana tabacum HOM05D004247 ORTHO05D004994 4.5e-25 118.6 70 78.6
Atru.chr13.210 Acer truncatum HOM05D004247 ORTHO05D004994 2.2e-24 116.3 173 48.6
Mapoly0080s0027 Marchantia polymorpha HOM05D004247 ORTHO05D004994 3.2e-23 112.5 169 43.8
MCO15G475 Micromonas commoda HOM05D004247 ORTHO05D004994 5.5e-23 111.7 159 44.7
Nitab4.5_0002353g0080 Nicotiana tabacum HOM05D004247 ORTHO05D004994 1.8e-18 96.7 67 70.1
Nitab4.5_0000498g0120 Nicotiana tabacum HOM05D004247 ORTHO05D004994 3.3e-15 85.9 81 55.6
Cc01_g01320 Coffea canephora HOM05D004247 ORTHO05D004994 6.1e-14 81.6 44 86.4
Cc01_g01310 Coffea canephora HOM05D004247 ORTHO05D004994 3.5e-09 65.9 68 64.7


User provided reference genes

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