Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.05G205700 Glycine max HOM05D005566 ORTHO05D007534 5.7e-295 1016.9 548 100.0
Glyma.08G012600 Glycine max HOM05D005566 ORTHO05D007534 4.5e-247 857.8 558 83.5
VMungo0251G1600 Vigna mungo HOM05D005566 ORTHO05D007534 3.4e-223 778.5 554 76.0
Phvul.002G287600 Phaseolus vulgaris HOM05D005566 ORTHO05D007534 6.3e-209 731.1 555 75.1
Lalb_Chr09g0333291 Lupinus albus HOM05D005566 ORTHO05D007534 3.8e-182 642.1 579 62.3
Lj4g0021136 Lotus japonicus HOM05D005566 ORTHO05D007534 2.1e-180 636.3 590 64.7
Ca_17550_v3 Cicer arietinum L. HOM05D005566 ORTHO05D007534 2.5e-149 533.1 564 56.4
arahy.Tifrunner.gnm1.ann1.H32RIC Arachis hypogaea HOM05D005566 ORTHO05D007534 9.3e-144 514.6 539 56.8
arahy.Tifrunner.gnm1.ann1.8RU08H Arachis hypogaea HOM05D005566 ORTHO05D007534 3.5e-143 512.7 539 56.6
Medtr8g097290 Medicago truncatula HOM05D005566 ORTHO05D007534 6.6e-134 481.9 723 46.9
QL12p018066 Quercus lobata HOM05D005566 ORTHO05D007534 3.3e-125 453.0 607 48.1
TPR.G12738 Trifolium pratense HOM05D005566 ORTHO05D007534 7.4e-125 451.8 666 47.0
Haze_08893 Corylus avellana HOM05D005566 ORTHO05D007534 8.1e-124 448.4 603 47.9
Gohir.D12G229000 Gossypium hirsutum HOM05D005566 ORTHO05D007534 2.6e-122 443.4 554 51.6
Psat7g035520 Pisum sativum HOM05D005566 ORTHO05D007534 3.4e-122 443.0 799 41.9
Gorai.008G245200 Gossypium raimondii HOM05D005566 ORTHO05D007534 1.0e-121 441.4 554 51.8
Cfa012142 Carpinus fangiana HOM05D005566 ORTHO05D007534 1.7e-121 440.7 603 47.9
Dinv38972 Davidia involucrata HOM05D005566 ORTHO05D007534 8.4e-121 438.3 584 46.6
Gohir.A12G226600 Gossypium hirsutum HOM05D005566 ORTHO05D007534 5.5e-120 435.6 554 51.8
PGR031G0987 Punica granatum HOM05D005566 ORTHO05D007534 9.3e-120 434.9 560 48.4
Prupe.5G095700 Prunus persica HOM05D005566 ORTHO05D007534 2.1e-119 433.7 616 48.4
Thecc.03G275300 Theobroma cacao HOM05D005566 ORTHO05D007534 1.8e-118 430.6 529 50.7
Manes.02G024200 Manihot esculenta HOM05D005566 ORTHO05D007534 5.1e-118 429.1 548 47.8
MD06G1077900 Malus domestica HOM05D005566 ORTHO05D007534 9.6e-117 424.9 616 45.1
Duzib084G0536 Durio zibethinus HOM05D005566 ORTHO05D007534 1.6e-116 424.1 532 51.5
GSVIVG01019806001 Vitis vinifera HOM05D005566 ORTHO05D007534 4.8e-116 422.5 537 49.0
Potri.003G124200 Populus trichocarpa HOM05D005566 ORTHO05D007534 2.4e-115 420.2 519 53.4
Ciclev10024399m.g Citrus clementina HOM05D005566 ORTHO05D007534 6.9e-115 418.7 558 50.4
COL.COLO4_34426 Corchorus olitorius HOM05D005566 ORTHO05D007534 1.5e-114 417.5 574 50.2
TWI81G0928 Tripterygium wilfordii HOM05D005566 ORTHO05D007534 5.0e-113 412.5 544 49.4
Sabra03G0087800 Salix brachista HOM05D005566 ORTHO05D007534 5.5e-112 409.1 558 46.2
Nn6g33532 Nelumbo nucifera HOM05D005566 ORTHO05D007534 1.6e-111 407.5 542 46.7
CANSAT21G2631 Cannabis sativa HOM05D005566 ORTHO05D007534 3.5e-111 406.4 591 46.4
CSS0044378 Camellia sinensis var. sinensis HOM05D005566 ORTHO05D007534 1.0e-110 404.8 564 45.2
CiPaw.12G095300 Carya illinoinensis HOM05D005566 ORTHO05D007534 1.5e-109 401.0 508 48.2
ClCG01G002940 Citrullus lanatus HOM05D005566 ORTHO05D007534 1.3e-108 397.9 607 43.7
Duzib205G0430 Durio zibethinus HOM05D005566 ORTHO05D007534 1.3e-108 397.9 547 49.2
CsaV3_5G003020 Cucumis sativus L. HOM05D005566 ORTHO05D007534 2.8e-108 396.7 601 44.1
Eucgr.D01874 Eucalyptus grandis HOM05D005566 ORTHO05D007534 3.1e-107 393.3 548 46.9
RcHm_v2.0_Chr7g0198431 Rosa chinensis HOM05D005566 ORTHO05D007534 5.3e-107 392.5 658 43.2
Atru.chr9.204 Acer truncatum HOM05D005566 ORTHO05D007534 5.9e-106 389.0 546 44.3
FvH4_5g01950 Fragaria vesca HOM05D005566 ORTHO05D007534 1.0e-105 388.3 660 43.2
Hma1.2p1_1943F.1_g308460 Hydrangea macrophylla HOM05D005566 ORTHO05D007534 1.0e-105 388.3 517 47.0
FAN18G1004 Fragaria x ananassa HOM05D005566 ORTHO05D007534 8.5e-105 385.2 660 43.0
THA.LOC104809401 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 1.4e-104 384.4 521 45.1
TAR629G1018 Trochodendron aralioides HOM05D005566 ORTHO05D007534 1.2e-103 381.3 596 40.6
Ah.12g057290 Amaranthus hybridus HOM05D005566 ORTHO05D007534 2.1e-103 380.6 556 42.4
Sed0016580 Sechium edule HOM05D005566 ORTHO05D007534 4.6e-103 379.4 599 42.2
Aa31LG1G1950 Aethionema arabicum HOM05D005566 ORTHO05D007534 2.3e-102 377.1 538 45.0
EL10Ac5g12770 Beta vulgaris HOM05D005566 ORTHO05D007534 3.0e-102 376.7 593 41.8
Cpa.g.sc76.21 Carica papaya HOM05D005566 ORTHO05D007534 3.0e-102 376.7 556 44.8
Sc22g0000210 Simmondsia chinensis HOM05D005566 ORTHO05D007534 3.9e-102 376.3 598 41.5
FAN04G1912 Fragaria x ananassa HOM05D005566 ORTHO05D007534 1.5e-101 374.4 660 42.3
FAN13G1151 Fragaria x ananassa HOM05D005566 ORTHO05D007534 7.4e-101 372.1 651 41.2
Actinidia02022 Actinidia chinensis HOM05D005566 ORTHO05D007534 6.3e-100 369.0 661 38.7
CARHR013110 Cardamine hirsuta HOM05D005566 ORTHO05D007534 3.1e-99 366.7 572 42.0
Carub.0001s1252 Capsella rubella HOM05D005566 ORTHO05D007534 9.1e-99 365.2 568 44.4
CAN.G792.89 Capsicum annuum HOM05D005566 ORTHO05D007534 9.1e-99 365.2 559 43.6
MELO3C005651.2 Cucumis melo HOM05D005566 ORTHO05D007534 2.0e-98 364.0 604 42.4
Cc08_g14350 Coffea canephora HOM05D005566 ORTHO05D007534 3.4e-98 363.2 543 44.0
Oeu049553.1 Olea europaea HOM05D005566 ORTHO05D007534 1.7e-97 360.9 578 41.0
BcaC05g25155 Brassica carinata HOM05D005566 ORTHO05D007534 2.2e-97 360.5 555 43.2
Solyc08g007950.3 Solanum lycopersicum HOM05D005566 ORTHO05D007534 5.0e-97 359.4 582 42.4
Sp1g11360 Schrenkiella parvula HOM05D005566 ORTHO05D007534 6.5e-97 359.0 540 43.3
Thhalv10006889m.g Eutrema salsugineum HOM05D005566 ORTHO05D007534 2.5e-96 357.1 543 43.3
Lj2A187T86 Lonicera japonica HOM05D005566 ORTHO05D007534 2.5e-96 357.1 509 44.4
A06p08880 Brassica napus HOM05D005566 ORTHO05D007534 4.2e-96 356.3 549 43.2
MSTRG.11999 Avicennia marina HOM05D005566 ORTHO05D007534 7.2e-96 355.5 564 41.0
PSO063G1293 Papaver somniferum HOM05D005566 ORTHO05D007534 7.2e-96 355.5 578 44.1
Peaxi162Scf00102g01550 Petunia axillaris HOM05D005566 ORTHO05D007534 2.3e-94 350.5 610 38.2
SalBow6G1897 Salvia bowleyana HOM05D005566 ORTHO05D007534 3.0e-94 350.1 589 42.6
PSO782G1537 Papaver somniferum HOM05D005566 ORTHO05D007534 8.8e-94 348.6 593 42.5
AUR62010607 Chenopodium quinoa HOM05D005566 ORTHO05D007534 3.3e-93 346.7 621 39.5
SalBow5G3774 Salvia bowleyana HOM05D005566 ORTHO05D007534 3.3e-93 346.7 602 41.0
AT1G12800 Arabidopsis thaliana HOM05D005566 ORTHO05D007534 7.4e-93 345.5 563 41.0
AL1G24430 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 9.7e-93 345.1 585 41.5
Actinidia14546 Actinidia chinensis HOM05D005566 ORTHO05D007534 4.8e-92 342.8 508 43.3
Nitab4.5_0001200g0190 Nicotiana tabacum HOM05D005566 ORTHO05D007534 4.8e-92 342.8 582 39.5
AUR62017248 Chenopodium quinoa HOM05D005566 ORTHO05D007534 7.0e-91 339.0 643 38.1
Sopen08g003840 Solanum pennellii HOM05D005566 ORTHO05D007534 5.9e-90 335.9 641 36.2
C05p10500 Brassica napus HOM05D005566 ORTHO05D007534 2.9e-89 333.6 553 41.0
BolC5t29796H Brassica oleracea HOM05D005566 ORTHO05D007534 2.9e-89 333.6 553 41.0
Migut.A00792 Erythranthe guttata HOM05D005566 ORTHO05D007534 1.2e-87 328.2 606 38.0
FAN08G2943 Fragaria x ananassa HOM05D005566 ORTHO05D007534 8.0e-87 325.5 660 39.8
BraA06t24082Z Brassica rapa HOM05D005566 ORTHO05D007534 1.0e-86 325.1 559 39.9
BcaC05g25112 Brassica carinata HOM05D005566 ORTHO05D007534 2.3e-86 323.9 520 41.3
SGA_v2.0_scaffold253G45116 Striga asiatica HOM05D005566 ORTHO05D007534 1.8e-83 314.3 601 37.1
HanXRQChr02g0048911 Helianthus annuus HOM05D005566 ORTHO05D007534 2.7e-82 310.5 592 39.9
unitig_744.g24358 Utricularia gibba HOM05D005566 ORTHO05D007534 3.5e-82 310.1 574 39.7
Nitab4.5_0004032g0020 Nicotiana tabacum HOM05D005566 ORTHO05D007534 2.9e-81 307.0 606 38.8
Lsat_1_v5_gn_6_5820 Lactuca sativa HOM05D005566 ORTHO05D007534 3.8e-81 306.6 595 40.2
MBI17_g08175_MAGBIO Magnolia biondii HOM05D005566 ORTHO05D004184 2.5e-80 303.9 507 40.2
Glyma.06G293800 Glycine max HOM05D005566 ORTHO05D007534 1.6e-79 301.2 156 96.8
ECA233G6007 Erigeron canadensis HOM05D005566 ORTHO05D007534 3.0e-78 297.0 655 35.0
CDE08G0014 Ceratophyllum demersum HOM05D005566 ORTHO05D007534 4.0e-78 296.6 554 39.4
DCAR_008409 Daucus carota HOM05D005566 ORTHO05D007534 4.0e-78 296.6 557 37.3
CDE05G3632 Ceratophyllum demersum HOM05D005566 ORTHO05D007534 3.4e-77 293.5 549 39.3
Hund11490 Selenicereus undatus HOM05D005566 ORTHO05D007534 2.2e-76 290.8 558 37.5
Aqoxy5G04022 Aquilegia oxysepala HOM05D005566 ORTHO05D007534 6.5e-73 279.3 549 34.8
ATR0680G084 Amborella trichopoda HOM05D005566 ORTHO05D007534 2.5e-72 277.3 568 35.7
Lsat_1_v5_gn_3_7621 Lactuca sativa HOM05D005566 ORTHO05D007534 2.1e-71 274.2 554 36.8
vmacro11305 Vaccinium macrocarpon HOM05D005566 ORTHO05D007534 2.6e-69 267.3 571 34.7
Zm00001eb229900 Zea mays HOM05D005566 ORTHO05D007534 3.1e-67 260.4 625 31.4
DCAR_004649 Daucus carota HOM05D005566 ORTHO05D007534 2.9e-65 253.8 545 34.5
Os02g0115600 Oryza sativa ssp. japonica HOM05D005566 ORTHO05D007534 1.1e-64 251.9 617 31.3
Rhsim02G0223600 Rhododendron simsii HOM05D005566 ORTHO05D007534 7.3e-64 249.2 760 29.3
Actinidia27393 Actinidia chinensis HOM05D005566 ORTHO05D007534 3.4e-61 240.4 236 54.7
CSS0022681 Camellia sinensis var. sinensis HOM05D005566 ORTHO05D007534 3.4e-61 240.4 241 55.2
ECA246G0114 Erigeron canadensis HOM05D005566 ORTHO05D007534 5.7e-61 239.6 524 34.0
AL1G24290 Arabidopsis lyrata HOM05D005566 ORTHO05D007534 4.9e-60 236.5 256 52.3
arahy.Tifrunner.gnm1.ann1.SR6UK4 Arachis hypogaea HOM05D005566 ORTHO05D007534 2.5e-56 224.2 283 49.1
THA.LOC104809657 Tarenaya hassleriana HOM05D005566 ORTHO05D007534 4.3e-56 223.4 252 49.2
HanXRQChr06g0165791 Helianthus annuus HOM05D005566 ORTHO05D007534 9.5e-56 222.2 535 34.4
HPP92_014800 Vanilla planifolia HOM05D005566 ORTHO05D007534 4.0e-54 216.9 541 33.1
MD14G1098600 Malus domestica HOM05D005566 ORTHO05D007534 2.6e-45 187.6 149 65.8
MD14G1098700 Malus domestica HOM05D005566 ORTHO05D007534 5.8e-37 159.8 242 42.6
SEGI_27473 Sequoiadendron giganteum HOM05D005566 ORTHO05D007534 1.0e-25 122.5 188 39.9
C08p15640 Brassica napus HOM05D005566 ORTHO05D007534 1.8e-22 111.7 123 53.7
BolC8t49191H Brassica oleracea HOM05D005566 ORTHO05D007534 1.8e-22 111.7 123 53.7
HPP92_014799 Vanilla planifolia HOM05D005566 ORTHO05D007534 1.7e-20 105.1 180 37.2
ECA233G5767 Erigeron canadensis HOM05D005566 ORTHO05D007534 3.0e-17 94.4 148 43.9
Mapoly0023s0130 Marchantia polymorpha HOM05D005566 ORTHO05D007534 6.2e-15 86.7 187 32.6
Glyma.12G133450 Glycine max HOM05D005566 ORTHO05D007534 1.3e-12 79.0 38 97.4
Pp3c15_23440 Physcomitrium patens HOM05D005566 ORTHO05D007534 1.7e-12 78.6 182 30.8
Pp3c9_24810 Physcomitrium patens HOM05D005566 ORTHO05D007534 2.2e-12 78.2 182 31.9
AagrBONN_evm.TU.Sc2ySwM_117.842 Anthoceros agrestis HOM05D005566 ORTHO05D007534 3.8e-12 77.4 180 27.8


User provided reference genes

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