Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.1e-299 1031.6 510 100.0
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.2e-286 989.2 510 96.3
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 1.7e-269 932.2 490 94.3
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.3e-269 931.8 511 90.4
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 5.0e-269 930.6 512 90.2
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.6e-267 924.5 504 90.9
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.2e-264 915.2 489 92.8
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 6.6e-261 903.7 504 89.3
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.2e-254 882.9 526 84.4
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.8e-242 842.4 516 82.2
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.4e-242 842.0 503 84.3
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.4e-241 838.2 505 83.0
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.2e-240 835.5 505 83.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.8e-240 834.7 513 81.1
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.4e-240 833.9 505 83.0
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.4e-240 833.9 505 83.2
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-239 833.2 505 83.2
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.6e-238 829.3 501 82.8
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.0e-237 825.1 502 81.7
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.0e-237 825.1 519 79.6
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.5e-236 822.8 505 81.2
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 7.3e-236 820.5 511 81.6
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.3e-235 819.7 513 80.1
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 8.1e-235 817.0 504 81.5
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 2.0e-233 812.4 515 78.6
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 1.1e-231 806.6 512 79.1
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.2e-230 803.1 518 78.2
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.3e-229 798.9 521 77.7
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 5.1e-229 797.7 505 78.8
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.5e-228 795.4 505 79.4
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 2.5e-228 795.4 514 77.6
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.6e-228 794.3 521 77.4
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.8e-227 791.2 521 77.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 6.9e-226 787.3 501 79.4
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 3.4e-225 785.0 521 76.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.7e-224 782.7 511 77.5
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.4e-224 780.8 521 76.8
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.4e-223 779.6 511 75.1
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.9e-223 779.2 509 77.6
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.2e-222 776.5 508 77.0
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.0e-222 774.2 505 78.0
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 7.9e-222 773.9 510 77.5
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.8e-221 772.7 500 78.2
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 8.7e-221 770.4 538 73.6
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 8.7e-221 770.4 511 77.3
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-220 770.0 511 75.1
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.1e-220 770.0 512 75.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.5e-220 769.6 520 75.4
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.5e-220 768.8 510 76.5
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.6e-219 766.1 511 76.9
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 8.2e-219 763.8 508 75.2
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.8e-218 762.7 513 76.0
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.8e-218 762.7 519 73.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.4e-218 762.3 514 74.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 4.0e-218 761.5 508 76.6
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 6.9e-218 760.8 458 83.2
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 4.5e-217 758.1 500 77.4
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.2e-216 755.7 520 74.6
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 3.8e-216 755.0 512 74.0
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 5.5e-215 751.1 528 73.5
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 7.1e-215 750.7 550 70.9
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 9.3e-215 750.4 509 74.9
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.7e-214 748.8 517 73.5
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.7e-214 748.8 517 73.5
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 2.7e-214 748.8 461 82.6
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.6e-214 748.0 522 74.7
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.8e-213 746.1 509 73.1
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.7e-213 744.2 496 75.6
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.7e-213 744.2 510 75.1
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 6.7e-213 744.2 511 74.4
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 3.7e-211 738.4 495 75.8
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.7e-211 738.4 516 73.4
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 8.2e-211 737.3 519 74.8
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 8.2e-211 737.3 495 75.4
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.4e-210 736.5 532 71.6
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 5.9e-209 731.1 497 75.3
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.7e-208 729.6 517 72.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.9e-208 728.8 511 73.0
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 6.5e-208 727.6 516 71.5
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 6.1e-206 721.1 510 72.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 7.9e-206 720.7 510 71.0
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.3e-205 719.9 507 71.0
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.8e-205 719.5 540 69.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.3e-204 714.9 475 74.9
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 2.8e-203 712.2 588 65.6
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.2e-200 702.6 525 68.6
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.4e-199 699.9 498 73.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 5.5e-199 698.0 465 75.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 9.4e-199 697.2 465 75.7
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.9e-198 694.1 516 70.3
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.0e-197 692.2 426 81.7
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 5.1e-197 691.4 515 68.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 9.1e-194 680.6 512 70.1
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 5.0e-192 674.9 376 89.6
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 9.4e-191 670.6 502 69.5
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.8e-186 656.4 413 81.1
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 4.7e-182 641.7 437 73.5
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.3e-181 639.4 534 63.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 1.2e-180 637.1 530 64.2
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 4.8e-179 631.7 471 70.7
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.0e-169 599.7 559 55.6
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.5e-169 598.6 515 60.6
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.5e-167 593.6 481 63.0
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 4.9e-163 578.6 487 62.0
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.1e-162 575.9 480 61.7
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 4.5e-161 572.0 450 66.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 2.5e-159 566.2 340 82.4
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 5.4e-154 548.5 504 56.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.0e-152 544.3 476 61.1
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.1e-149 534.3 370 76.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 5.2e-149 531.9 478 57.9
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.0e-148 530.0 294 86.7
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 7.5e-148 528.1 370 75.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.2e-147 526.6 368 74.2
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 1.4e-146 523.9 353 77.3
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.4e-146 523.9 488 56.4
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.7e-145 519.6 392 68.6
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 6.0e-145 518.5 524 53.4
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 2.9e-139 499.6 487 55.2
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 8.1e-134 481.5 515 50.5
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.7e-131 473.8 359 70.8
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.1e-130 471.1 316 77.5
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 3.6e-126 456.1 337 72.7
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.4e-124 449.5 407 61.4
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.2e-113 414.5 410 51.7
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-108 397.5 469 52.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.6e-105 387.5 363 61.7
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.3e-88 330.5 232 73.7
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.8e-86 322.8 316 58.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 4.5e-84 316.2 162 89.5
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.8e-80 304.3 249 63.5
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.0e-79 300.8 295 56.6
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.2e-78 297.4 217 66.4
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.8e-78 296.2 146 95.2
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 7.4e-71 272.3 397 40.1
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.8e-69 267.7 145 86.9
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.8e-64 251.1 145 80.7
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.3e-59 235.0 304 42.8
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.5e-58 230.7 214 62.6
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 7.7e-52 209.1 330 40.0
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 3.4e-47 193.7 165 59.4
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.8e-41 174.1 129 68.2
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.2e-36 158.7 104 71.2
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.0e-35 154.1 117 74.4
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.5e-34 151.8 198 47.0
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.9e-30 137.5 368 29.6
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-29 134.8 68 91.2
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.6e-20 105.1 62 75.8
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 3.1e-16 90.9 65 69.2
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 2.0e-15 88.2 60 73.3
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.1e-13 82.4 45 86.7
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 9.2e-13 79.3 38 94.7
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 1.9e-10 71.6 64 60.9
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.2e-09 66.6 50 60.0
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.0e-08 62.8 46 56.5
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.8e-07 60.1 81 43.2


User provided reference genes

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